BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484103
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01860.1 | Symbols: EMB975 | Tetratricopeptide repeat (TPR)-... 2095 0.0
AT2G01870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 457 2e-127
> AT2G01860.1 | Symbols: EMB975 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:388055-389918 FORWARD LENGTH=1864
Length=1864
Score = 2095 bits (1134), Expect = 0.0
Identities = 1355/1461 (93%), Gaps = 18/1461 (1%)
Strand=Plus/Plus
Query 97 TGTCCTGTCTCTTCGTCACTTAGCTTCCACTTGAATCCTCAAACCAGGAGTCTCGGTAAC 156
||||||||||||| |||||||||||| |||||||||| || |||||| || |||| |||
Sbjct 241 TGTCCTGTCTCTTTGTCACTTAGCTTTCACTTGAATCTTCGAACCAGTAGAATCGGAAAC 300
Query 157 ATAGGAGTAACAAGAGTCAACGCGAGTCAAAGGAACCACTTTAAGAAACTCACTAAGAAT 216
||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 301 ATAGGAGTAACAAGAGTCAACGCTAGTCAAAGGAATCACTCTAAGAAACTCACTAAGAAT 360
Query 217 CTGCGTAATCCACGCC-TAACCAAGCTTCCTCCTGATTTTGGTGTTAATTTGTTTCTGAG 275
|| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 CTCCGTAATCCACGCCGT-ACCAAGCTTCCTCCTGATTTTGGTGTTAATTTGTTTCTTAG 419
Query 276 GAAACCCAAAACTGAACCAGTTGTGGA-TGATTATGATGCTGA-TAATGATGTGCAAG-A 332
||||||||||| ||||||| | || || |||| |||||| ||| || | | | |||| |
Sbjct 420 GAAACCCAAAATTGAACCACTAGT-GATTGATGATGATGATGAGCAA-G-T-T-CAAGAA 474
Query 333 TCA-AGAATCTG-TGGATGATGATGCTGTTGTGTGGGAACCAGAAGAAATCGAGGCGATT 390
||| ||| || | ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 475 TCAGTGAA--TGAT-GATGATGATGCTGTTGTATGGGAACCAGAAGAAATCGAGGCTATT 531
Query 391 TCTTCGCTTTTTCAGAAAAGGATTCCTCAAAAACCCGGTAAACCGATTCGAGTTAGGCCT 450
|| ||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||
Sbjct 532 TCATCGCTGTTTCAGAAAAGGATACCTCAAAAACCCGATAAACCGAGTCGAGTTAGGCCT 591
Query 451 TTACCACTTCCTCAACCCCACAAGTTACGACCTTTAGGTCTTCCAACTCCAAAGAAGAAC 510
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TTACCACTTCCTCAACCTCACAAGTTACGACCTTTAGGTCTTCCAACTCCAAAGAAGAAC 651
Query 511 A-T-T-AGATCAGCTGCATTGTCTTCTGTATCGAAGCAAGTGTATAAAGATCCAAGTTTT 567
| | | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 652 ATTATCAGATCACCTGCATTGTCTTCTGTATCGAAGCAAGTGTATAAAGATCCAAGCTTT 711
Query 568 CTTATCGGTTTAGCTAGAGAGATTAAGAGCTTGCCTTCTTCTGATGCTGATGTCTCTCTT 627
|| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 712 CTCATTGGTTTAGCTAGAGAGATCAAGAGCTTGCCTTCTTCTGATGCAGATGTCTCTCTT 771
Query 628 GTTCTCAATAAATGGGTTAGCTTCTTGCGTAAAGGGTCACTTTCTATGACGATTCGAGAA 687
|||||||||||||||||||| |||||||||||||||||||| |||| ||| |||||||||
Sbjct 772 GTTCTCAATAAATGGGTTAGTTTCTTGCGTAAAGGGTCACTCTCTACGACTATTCGAGAA 831
Query 688 TTGGGTCATATGGGTTTGCCCGAGAGAGCTTTACAGACATATCATTGGGCTGAGAAGCAT 747
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 832 TTGGGTCATATGGGTTTGCCTGAGAGAGCTTTACAGACGTATCATTGGGCTGAAAAGCAT 891
Query 748 TCTCATTTAGTACCAGATAATCGGATTCTCGCATCCACTATTCAGGTTTTGGCCAAGCAC 807
||||||||||| || ||||| |||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 892 TCTCATTTAGTCCCTGATAACCGGATTCTTGCATCGACTATCCAGGTTTTGGCGAAGCAC 951
Query 808 CACGAGCTGAAATTGCTTAAGTTTGACAATAGTTTGGCTAGCAAGAACGTAATCGAAGCA 867
|| ||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 952 CATGAGCTGAAACTGCTTAAATTCGACAATAGTTTGGCTAGCAAGAATGTAATTGAAGCT 1011
Query 868 ATGATCAAGGGATGTATTGAAGGTGGATGGTTGAATCTAGCCCGGAAGCTTATACTGATC 927
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1012 ATGATCAAGGGATGCATTGAAGGTGGATGGTTGAATCTAGCTCGGAAGCTTATACTGATC 1071
Query 928 TCGAAGAGTAACAATCGAATACTCGACTCGAGTATTTACGTAAAGATGATTCTGGAGATA 987
||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||
Sbjct 1072 TCGAAGAGTAACAATCGAATACTTGACTCGAGTGTTTACGTGAAGATGATTCTGGAAATA 1131
Query 988 GCTAAAAACCCTGACAAGTACCATCTTGTTGTTACTCTTCTCGAGGAACTGAAAGAAAGA 1047
||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct 1132 GCTAAAAACCCTGACAAGTACCATCTTGTTGTTGCTCTTCTTGAGGAACTGAAAAAAAGA 1191
Query 1048 GAAGATTTGAAATTGAGCCAACAGGATTGCACAGGTATTATGAAGATCTGTGTGAAACTA 1107
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1192 GAAGATTTGAAATTGAGCCAGCAGGATTGCACAAGTATTATGAAGATCTGTGTGAAACTG 1251
Query 1108 GGAGAATTTGAGCTCGTTGAATCTCTCTTTGACTGGTTTAAAGAATCAAACAGAGAACCA 1167
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1252 GGAGAATTTGAGCTTGTTGAATCTCTCTTTGACTGGTTTAAAGCATCAAACAGAGAACCA 1311
Query 1168 AGCGTTGTAATGTACACTACGATGATCCATAGCAGGTATTCGGAACAGAAATACCGGGAG 1227
|||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||
Sbjct 1312 AGCGTTGTAATGTACACTACGATGATACATAGCCGGTATTCGGAACAAAAATACCGGGAG 1371
Query 1228 GCGATGAATGTGGTTTGGGAGATGGAGGAATCAAACTGTCTCCTTGATCTTCCAGCTTAT 1287
|| |||| |||||| ||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1372 GCAATGAGTGTGGTATGGGAGATGGAAGAATCAAATTGTCTTCTTGATCTTCCAGCTTAT 1431
Query 1288 AGAGTAGTCATTAAACTATTCGTAGCATTGGATGATTTGGGAAGAGCAATGAGGTATTAC 1347
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1432 AGAGTAGTCATTAAACTATTTGTAGCATTGGATGATTTGGGAAGAGCAATGAGGTATTAC 1491
Query 1348 TCTAAACTCAAGGAAGCTGGATTCTCGCCAACTTATGATATTTATCGCGATATGATTAAC 1407
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1492 TCTAAACTCAAGGAAGCTGGATTCTCGCCAACGTATGATATTTATCGCGATATGATTAGC 1551
Query 1408 GTTTATACCGCTTCTGGGCGATTGACAAAGTGTAAAGAGATATGTAAGGAAGTTGAAGAT 1467
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1552 GTTTATACCGCTTCAGGGCGATTGACAAAGTGTAAAGAGATATGTAAGGAGGTTGAAGAT 1611
Query 1468 GCTGGATTGAGGTTAGATAAAGATACTTCATTTATGTTGTTGCAGCTCGAAAAGCAAACA 1527
|||||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 1612 GCTGGATTGAGGTTGGATAAAGATACTTCATTTAGGTTACTGCAGCTCGAGAAGCAAACA 1671
Query 1528 ATGTCTCTTTTGCACTGAAGA 1548
|||||||||||||||||||||
Sbjct 1672 ATGTCTCTTTTGCACTGAAGA 1692
Score = 137 bits (74), Expect = 3e-31
Identities = 79/81 (98%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 1540 CACTGAAGATTTCTACTGTTTGAAAGTGTTTTCAGGCAAAGATGAAAGTGGAAACTTGAC 1599
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1781 CACT-AAGATTTCTACTGTTTGAAAGTGTTTTCAGGCAAAGATGAAAGTGGAAACTTAAC 1839
Query 1600 AATGTCAGAATCAGACATAGC 1620
|||||||||||||||||||||
Sbjct 1840 AATGTCAGAATCAGACATAGC 1860
> AT2G01870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; Has 11 Blast hits to 11 proteins in 5 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr2:389470-390405 REVERSE LENGTH=936
Length=936
Score = 457 bits (247), Expect = 2e-127
Identities = 267/277 (96%), Gaps = 0/277 (0%)
Strand=Plus/Minus
Query 1272 TGATCTTCCAGCTTATAGAGTAGTCATTAAACTATTCGTAGCATTGGATGATTTGGGAAG 1331
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 936 TGATCTTCCAGCTTATAGAGTAGTCATTAAACTATTTGTAGCATTGGATGATTTGGGAAG 877
Query 1332 AGCAATGAGGTATTACTCTAAACTCAAGGAAGCTGGATTCTCGCCAACTTATGATATTTA 1391
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 876 AGCAATGAGGTATTACTCTAAACTCAAGGAAGCTGGATTCTCGCCAACGTATGATATTTA 817
Query 1392 TCGCGATATGATTAACGTTTATACCGCTTCTGGGCGATTGACAAAGTGTAAAGAGATATG 1451
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 816 TCGCGATATGATTAGCGTTTATACCGCTTCAGGGCGATTGACAAAGTGTAAAGAGATATG 757
Query 1452 TAAGGAAGTTGAAGATGCTGGATTGAGGTTAGATAAAGATACTTCATTTATGTTGTTGCA 1511
|||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||
Sbjct 756 TAAGGAGGTTGAAGATGCTGGATTGAGGTTGGATAAAGATACTTCATTTAGGTTACTGCA 697
Query 1512 GCTCGAAAAGCAAACAATGTCTCTTTTGCACTGAAGA 1548
|||||| ||||||||||||||||||||||||||||||
Sbjct 696 GCTCGAGAAGCAAACAATGTCTCTTTTGCACTGAAGA 660
Score = 137 bits (74), Expect = 3e-31
Identities = 79/81 (98%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 1540 CACTGAAGATTTCTACTGTTTGAAAGTGTTTTCAGGCAAAGATGAAAGTGGAAACTTGAC 1599
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 571 CACT-AAGATTTCTACTGTTTGAAAGTGTTTTCAGGCAAAGATGAAAGTGGAAACTTAAC 513
Query 1600 AATGTCAGAATCAGACATAGC 1620
|||||||||||||||||||||
Sbjct 512 AATGTCAGAATCAGACATAGC 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5