BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484105
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01880.1 | Symbols: PAP7, ATPAP7 | purple acid phosphatase 7... 1561 0.0
> AT2G01880.1 | Symbols: PAP7, ATPAP7 | purple acid phosphatase
7 | chr2:391423-394032 REVERSE LENGTH=1192
Length=1192
Score = 1561 bits (845), Expect = 0.0
Identities = 968/1027 (94%), Gaps = 10/1027 (1%)
Strand=Plus/Plus
Query 1 TTGTCTAATACCAGATAAAA-TAAGTAAGAAGAAAATGAAGATTTACGTATGTTTTAGTG 59
|||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||
Sbjct 31 TTGTCTCATACCAGATAAAACAAAGTAAGAAGAAGATGAAGATGCACGTATGTTTTAGTG 90
Query 60 TGATTTTGATGTTTCTATGCATCTTCTTCATCAGTGGTGCTTTGTCGGAGCTTGAAAGGT 119
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 91 TGATTTTGATGTTTCTAAGCATCTTCTTCATCAATGGTGCTTTGTCGAAGCTTGAAAGGT 150
Query 120 TGGAACATCCGGTG-A-CA-AAATCTGATGGCTCTCTGAGTTTTCTGGTCGTTGGAGATT 176
|| ||||||||||| | | |||||||||||||||||||||||||| || | |||||||
Sbjct 151 TGAAACATCCGGTGAAGAAGAAATCTGATGGCTCTCTGAGTTTTCTTGTTATCGGAGATT 210
Query 177 GGGGACGCGAAGGAGAG-TTTAATCAATCTCTCGTTGCACATCAGATGGGAATTGTGGGA 235
|||||||| |||| | | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 211 GGGGACGCAAAGGTG-GTTTTAATCAATCTCTCGTTGCACATCAGATGGGAGTTGTGGGA 269
Query 236 GAGCAATTAGACATAGATTTTGTGATATCAGTAGGAGATAATTTCTACGACGACGGATTA 295
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 GAGAAATTAGACATAGATTTTGTGATATCAGTAGGAGATAATTTCTACGACGACGGATTA 329
Query 296 AAAGGAGACAATGA-CACTTCCTTTGAAGCCTCTTTCTCTCATATCTACACTCATCCTAG 354
||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 AAAGGAGTCAATGATC-CTTCCTTTGAAGCCTCTTTCTCTCATATCTACACTCATCCTAG 388
Query 355 TCTCCAAAAACAGTGGTATTCAGTTTTGGGTAACCATGATTACAGAGGAAATGTTGAAGC 414
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 TCTCCAAAAACAATGGTATTCAGTTTTGGGTAACCATGATTACAGAGGAAATGTTGAAGC 448
Query 415 CCAACTAAGTCAAGTTCTTACCCAAAAAGATTGGAGATGGTTTTGTCGCAGATCTTTTGT 474
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 449 ACAACTAAGTAAAGTTCTCACCCAAAAAGATTGGAGATGGTTTTGTCGCAGATCTTTTGT 508
Query 475 CTTATCCTCAGGAATGGTGGAGTTTTTCTTCGTGGACACAAATCCATTTGTAGATAAATA 534
||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||
Sbjct 509 CTTATCCTCAGGAATGGTGGATTTTTTCTTCGCGGACACAAATCCTTTTGTAGAAAAATA 568
Query 535 CTTCACTGATCCAGGAGATCACACTTATGATTGGAGCACTGTCTTACCTAGAAATAAATA 594
||||||||| |||| ||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct 569 CTTCACTGAACCAGAAGATCACACTTATGATTGGAGAAATGTCTTACCAAGAAATAAATA 628
Query 595 CATCTCAAACCTCTTACATGATTTAGATTTAGAGATTAAAAAATCGCGTGCTACATGGAA 654
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 629 CATCTCAAACCTCTTACATGATTTAGATTTAGAGATTAAAAAGTCGCGTGCCACATGGAA 688
Query 655 ATTTGTCGTGGGACATCACGGGATCAAAACCGCAGGGCATCACGGTGTGACCCAAGAGCT 714
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 689 ATTTGTCGTGGGACATCACGGGATCAAAACCGCAGGTAATCACGGTGTGACTCAAGAGCT 748
Query 715 CGTAGATCAACTTCTTCCAATTCTAGAGGAGAATAAAGTGGACTTGTACATAAATGGACA 774
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TGTAGATCAACTTCTTCCAATTCTAGAGGAGAATAAAGTGGACTTGTACATAAATGGACA 808
Query 775 TGATCACTGCTTGCAACACATTGGTTCTGACGGTGAAACCCAATTTCTGACAAGTGGAGG 834
|||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct 809 TGATCACTGCTTGCAACACATTGGTTCTCACGGTAAAACCCAATTTCTTACAAGTGGAGG 868
Query 835 AGGATCAAAGGCATGGAGAGGAGATATTCAGCCATGGGATCCCAAAGAACTCAAACTGTA 894
|||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 869 AGGATCAAAGGCATGGAGAGGACATGTTCAGCCATGGGATCCAAAAGAACTCAAACTGTA 928
Query 895 TTACGATGGACAAGGTTTCATGTCTCTTCACATCACTCACTCCCAAGCTAACTTCATCTA 954
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 929 TTACGATGGACAAGGTTTCATGTCTCTTCACATCACTCACTCCAAAGCTAAATTCATCTA 988
Query 955 CTATGATGTTTCCGGCAATGTTCTTCACCAATCCTCATTGTCCAAAAGATCTGTTC-TCC 1013
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 989 CTATGATGTTTCCGGCAATGTTCTTCACCGATCCTCATTGTCCAAAAGATCTGCTCATCT 1048
Query 1014 TCTAAAT 1020
| |||||
Sbjct 1049 T-TAAAT 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5