BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484108
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01900.1 | Symbols: | DNAse I-like superfamily protein | ch... 1995 0.0
AT5G04980.2 | Symbols: | DNAse I-like superfamily protein | ch... 67.6 3e-10
> AT2G01900.1 | Symbols: | DNAse I-like superfamily protein |
chr2:405918-409014 FORWARD LENGTH=1553
Length=1553
Score = 1995 bits (1080), Expect = 0.0
Identities = 1312/1420 (92%), Gaps = 31/1420 (2%)
Strand=Plus/Plus
Query 83 TATATAACCGGACTAAATATACGTATAACTTCTTGTTATTCTCTCTTGATCATTAATATA 142
|||||||||||||| |||||||||||||||| | |||||||| |||||| |||| |||||
Sbjct 130 TATATAACCGGACT-AATATACGTATAACTTATAGTTATTCTATCTTGACCATTGATATA 188
Query 143 TGCAAATCACTCTATGGTAATTGATATATAAGGTTATGTGGCCAAGACTTGTGGCCAACA 202
||| |||||||||||||| | | || |||||||||||||||||||||||||||||||||
Sbjct 189 TGCGAATCACTCTATGGT-A-T--TA-ATAAGGTTATGTGGCCAAGACTTGTGGCCAACA 243
Query 203 AGATCCTAAGGAAAAGTGTCGGGAGCAACAACTTCGTTGCCGATTTCCCACCGGATACCG 262
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
Sbjct 244 AGATCCTAAGGAAAAGCCTCGGGAGCAACAACTTCGTTGCCGATTTCCCACCTAATACTG 303
Query 263 AGCAGAAGTTTCTAGAAGCTTCCGGATTAGTTGATGAACGAGCTTCTTTCACTTCTAAAT 322
| |||||| || |||||||||||||||||| |||||||| | | |||||||
Sbjct 304 ATCAGAAGCTTATAGAAGCTTCCGGATTAGCTGATGAAC--G--------A--TCTAAAT 351
Query 323 CAATTCTTCTCGAGCAACACAAAACCACTCATCTCAAC-ACCAAGGTTTTTGTAAGCACA 381
||||||| | | | |||||||||||||||| ||||||| | |||||||||||||||||||
Sbjct 352 CAATTCTCCACAACCAACACAAAACCACTCTTCTCAACTA-CAAGGTTTTTGTAAGCACA 410
Query 382 TGGAACGTCGGTGGTATTGTACCAGAAGATGGGGTTGACATGGAGGATCTGTTGGAAACA 441
|||||||| |||||||| ||||| || ||||| |||||||||||||||| ||||||||
Sbjct 411 TGGAACGTGGGTGGTATCGTACCGGACGATGGACTTGACATGGAGGATCTACTGGAAACA 470
Query 442 CATCAAACACCGTGCGACATATACGTGCTTGGGTTTCAAGAGGTAGTGCCTCTTCGAGCT 501
||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 471 CATAAAACACCGTGCGACATATACGTGCTTGGGTTTCAAGAGGTTGTGCCTCTACGAGCT 530
Query 502 TCGAATGTTTTGGGATCAGATAACAACAAAGTCTCAACAAAATGGAACTCTTTGATAAGA 561
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 531 TCGAATGTTTTGGGATCAGATAACAACAAAGTCTCTACAAAATGGAACTCTTTGATAAGA 590
Query 562 GAGGCTTTGAACAAGGA-AGCAAAACCTCATGGAGACAAAGACTTGTCGGAATCAAAGGG 620
|| ||||||||||| || ||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 591 GATGCTTTGAACAA-GAGAGCAAGACCTCATCGAGACGAAGACTTGTCGGAATCAAAGGG 649
Query 621 TATTAATGGTATTTCACAAGATTTCAGATGTATCATAAGTAAACAGATGGTCGGAATCTT 680
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 650 CATTAATGGTATTTCACAAGATTTTAGATGTATCATAAGTAAACAGATGGTCGGAATCTT 709
Query 681 GATCACCGTTTGGGTCCGAGGTGATCTCTGGCCGTACATCCGTCATCCTAACGTTTCATG 740
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 710 GATCACCGTTTGGGTCCGAGGTGATCTCTGGCCGTACATCCGTTATCCTAGCGTTTCATG 769
Query 741 CGTTGGTTGCGGCATCATGGGTTGCTTAGGAAACAAGGGATCGGTATCGGTTAGATTTCA 800
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 770 CGTTGGTTGCGGCATCATGGGTTGCTTAGGAAACAAGGGATCAGTATCGGTTAGATTTCA 829
Query 801 ATTGCACGAAACGACCTTCTGTTTCGTTTGCAGCCACCTAGCTTCCGGTGGCCGTGGCCG 860
||||||||||||||| || ||||||||||| ||||| |||||||| |||||||| | |||
Sbjct 830 ATTGCACGAAACGACATTTTGTTTCGTTTGTAGCCATCTAGCTTCTGGTGGCCGCGACCG 889
Query 861 AGATGAAAGGCAGAGAAACTCCGACGTTAACGAGATCTTAGCTAGATCGAGTTTTCCTCG 920
||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 890 AGATGAAAGACAGAGAAACTCCGACGTCAACGAGATCTTAGCTAGATCTAGTTTTCCTCG 949
Query 921 AGGCTCATCTCTAGATTTACCCAAAAAGATTCTTGATCACGATCGAGTGATTTTTCTGGG 980
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 950 AGGCTCATCTCTAGATTTACCCAAAAAGATCCTTGATCACGATCGGGTGATTTTTTTGGG 1009
Query 981 AGACTTGAACTATAGAATTTCATTACCCGAGGAGAAGACAAGATTATTGGTGGAAAGCAA 1040
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1010 AGACTTGAATTATAGAATTTCATTACCGGAGGAGAAGACAAGATTATTGGTGGAAAGCAA 1069
Query 1041 AGAATGGAACATCTTATTAGAAAATGATCAGCTAAGGATGGAGATCTTGAACGGTCAGAT 1100
| |||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||||
Sbjct 1070 AAAATGGAACATCTTACTAGAAAATGATCAGCTGAGGATGGAGATCATGAACGGCCAGAT 1129
Query 1101 TTTCAGAGGTTGGCAAGAAGGAATTGTCAAATTTGCTCCAACTTATAAATATGTTCCAAA 1160
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1130 TTTCAGAGGGTGGCAAGAAGGAATTGTCAAATTTGCTCCAACGTATAAATACGTTCCAAA 1189
Query 1161 TTCGGATTTATATTACGGATGCATTACATATAAAAAAGACGAGAAGAAACGAGCTCCTGC 1220
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1190 TTCGGATTTATATTACGGATGCATTACATACAAAAAAGACGAGAAGAAACGAGCTCCTGC 1249
Query 1221 ATGGTGTGATCGAATAATATGGTACGGAAATGGACTGAAGCAACATGAATATACTAGAGG 1280
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1250 ATGGTGTGATCGAATAATATGGTACGGAAATGGACTGAAGCAACATGAATATACAAGAGG 1309
Query 1281 AGAAACGAAGATATCTGATCATAGACCTGTCAAAGCTATTTTCACCACAGAAATTACTGT 1340
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1310 AGAAACGAAGATATCTGATCATAGGCCTGTCAAAGCAATTTTCACCACAGAAATTACTGT 1369
Query 1341 TATACGGCGTGGTAAAAAGATTCGTAATTTCTTTTTCTCGGACAGATTTGAAGACAGAAT 1400
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1370 AACACGGCGTGGTAAAAAGATTCGTAATTTCTTTTTCTCGGACAGATTTGAAGAAAGAAT 1429
Query 1401 TAACGGGTATAGTAGCATCGATTCCAAAGACTACTCGTGGATATCTACATAGTTTTATAA 1460
| || | | | ||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1430 T---GG-T---G-A-CATAGATTCTAAAGACTACTCGTGGATATCTACATAGTTTTATTA 1480
Query 1461 ATCGGGGTTAAATCTTGTCACTTGTTAATATATAATTCAC 1500
|||||||| | ||||||||||||||||||||| |||||||
Sbjct 1481 ATCGGGGTGATATCTTGTCACTTGTTAATATACAATTCAC 1520
Score = 147 bits (79), Expect = 4e-34
Identities = 81/82 (99%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 1 TTCTTTCTATCTATTGTTCTTTAATTTGTCTCTCTCTTTTTCTCTAGCAATGCTTGGAAG 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTTCTATCTCTTGTTCTTTAATTTGTCTCTCTCTTTTTCTCTAGCAATGCTTGGAAG 60
Query 61 CTATAGAGAAGTGAGTATTAGT 82
||||||||||||||||||||||
Sbjct 61 CTATAGAGAAGTGAGTATTAGT 82
> AT5G04980.2 | Symbols: | DNAse I-like superfamily protein |
chr5:1468575-1470772 REVERSE LENGTH=1489
Length=1489
Score = 67.6 bits (36), Expect = 3e-10
Identities = 84/106 (79%), Gaps = 8/106 (8%)
Strand=Plus/Plus
Query 749 GCGGCATCATGGGTTGCTTAGGAAACAAGGGAT-CGGTATCGGTTAGATTT-CAATTGC- 805
|||| |||||||||||||||||||||||||||| | || | || || ||| || | |
Sbjct 855 GCGGAATCATGGGTTGCTTAGGAAACAAGGGATGCA-TAGCTGTGAG-TTTGCAGCT-CT 911
Query 806 ACGAA-ACGACCTTCTGTTTCGTTTGCAGCCACCTAGCTTCCGGTG 850
|| || |||| |||||| ||| | ||||| || |||||||| ||||
Sbjct 912 AC-AAGACGAGCTTCTGCTTCATCTGCAGTCATCTAGCTTCTGGTG 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73995603330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5