BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484111
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01913.1 | Symbols: | unknown protein; Has 35333 Blast hits... 926 0.0
> AT2G01913.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:421624-422626
REVERSE LENGTH=777
Length=777
Score = 926 bits (501), Expect = 0.0
Identities = 646/712 (91%), Gaps = 25/712 (4%)
Strand=Plus/Plus
Query 1 ATGGACTTCGATTCCTCAGGCAAAAGAGAAAGTGTGGAGGAGACAGTGATGATGGAATAC 60
||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 58 ATGGACTTCGATTCCGCAGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATAC 117
Query 61 GATGAAGAAACCAATCAATTCGACGTGGAATTCTGTCCCGTTGAGCATCCGGTTGAACCG 120
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 118 GATGAAGAAACCAATCAATTCGACGTTGAATTTTGTCCGGTTGAGCATCCTATTGAACCG 177
Query 121 GAAGAAGAAGATCGTCCGGTTAAATGTCCCGTACCAATCTCATCTTCTCTCATTCACAAA 180
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 178 GAGGAAGAAGATCGTCCGGTTAAATGTCCCGTACCAATATCATCTTCTCTCATCCACAAA 237
Query 181 TCAACGGAGAAATCTAAACCGGGCTGGGTTAAACACAGAG-C--CAGCTACGAAACTCCG 237
||| ||||||||| |||||||| |||||||||||||||| | ||||||||||||||||
Sbjct 238 CCAAAGGAGAAATCGAAACCGGGGTGGGTTAAACACAGAGCCAGCAGCTACGAAACTCCG 297
Query 238 GTTTATCCACCGCCACGTCATCATGTCCGTAACGTACGTAAGAGACACAACTCGTTCGAC 297
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 298 GTTTATCCACCGCCACGTCATCATGTACGTAACGTACGAAAGAGACACAACTCGTTTGAC 357
Query 298 GTGGAAGGGAACAACAACTTGTTCACGAGATCTC---ATGATGACGAAACCACATCTCGA 354
||||||||||||||||| || ||||||||||||| |||||||||||||||| ||||||
Sbjct 358 GTGGAAGGGAACAACAATTTCTTCACGAGATCTCATGATGATGACGAAACCACCTCTCGA 417
Query 355 AGATCCAATGTTACGATCTACCGAGTTCTTCAACAAGTTCACGAGTTCGAGCCGT--GAA 412
|||||||| || ||| ||||||||||||||||||||||||| ||||||||| ||| ||
Sbjct 418 AGATCCAACGTCACGTTCTACCGAGTTCTTCAACAAGTTCAGGAGTTCGAGTCGTAACAA 477
Query 413 ATTGTCAAATCTCTTTTGCGTTGAGGTGTTTATGTTGGGTTAAGGTAATAGTAGTTCGAT 472
| | ||||||||| | ||||| ||||||||||||| ||| | ||||||||| ||
Sbjct 478 AATATCAAATCTC---T---TTGAGATGTTTATGTTGGGGTAA--T-GTAGTAGTTCTAT 528
Query 473 GTAGTACCAAAGTTTCGGTATACTTG----TTATATTGTTATTCGGTGATTACCGGTCCG 528
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 529 GTAGTACCAAAGTTTCGGTATACTTGTTATTTATATTGTTATTCGGTGATAACCGGTCCG 588
Query 529 GTCAGATTCGGTTAACAGCTTTAGAAAATGTTATAATTTCTACTTTTCTAGTTTCTTATG 588
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 589 GTCAGATTCGGTTAACAGC-TTAAAAAATGTTATAATTTCTACTTTTCTAGTTTCTTATG 647
Query 589 AGTGCATGGGCATTTTCAGTATAAATCCTATTTTAGAATGGGCCGTGTTTTATGAAAGTC 648
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 648 AGTGCATGGGCATTTTCAGTATAA-TCCTACGTTAGAATGGGCCGTGTTTTATGAAAGTC 706
Query 649 AATATATGGGCTTAACTGGGCTTTACTTAT-TAAGTCCAAATAATTTATTAT 699
|||||||||||||||||||||| ||||| | ||||| |||||||||| ||||
Sbjct 707 AATATATGGGCTTAACTGGGCTATACTT-TCTAAGTTCAAATAATTTGTTAT 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5