BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484112
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01918.1 | Symbols: PQL3 | PsbQ-like 3 | chr2:424110-425713 ... 1031 0.0
> AT2G01918.1 | Symbols: PQL3 | PsbQ-like 3 | chr2:424110-425713
REVERSE LENGTH=743
Length=743
Score = 1031 bits (558), Expect = 0.0
Identities = 675/730 (92%), Gaps = 13/730 (2%)
Strand=Plus/Plus
Query 1 AAACGTGAATATATGGCGATTTCAAAGCCACCA-C-C-ACATATCACTTTCTTTCACAAA 57
||||||||||| ||||||||||||||||||||| | | |||| ||||||||||||||||
Sbjct 24 AAACGTGAATACATGGCGATTTCAAAGCCACCACCACTACATTTCACTTTCTTTCACAAT 83
Query 58 CAAGATTCTTCAATTGATACATCGGATTCTAACTTAACATTTTCCATTGATACATCTAGA 117
||||||||||||||||||||||||||||| |||||| || |||| ||||||||||||
Sbjct 84 CAAGATTCTTCAATTGATACATCGGATTCAAACTTAGCACTTTCTATTGATACATCT--- 140
Query 118 AGAAGAAGGAGACGAAGAGACGTTTTGCTCTCAATTTCGGGAACACTAATCCCTCAAGTG 177
|| | ||||||||||||||||||||| ||||||| || ||||||||||||||| ||
Sbjct 141 ---AG-A--AGACGAAGAGACGTTTTGCTCACAATTTCAGGTACACTAATCCCTCAACTG 194
Query 178 TTCTTCTTTGATCGTAAATGGTCAGCTTCTGCGAATGCCGCTGATTTTTTCAACTTCGGC 237
|||||||| ||||| ||| | || ||||||||||||||||||||||||||||||||||
Sbjct 195 TTCTTCTTCGATCGCAAACGCTCTTCTTCTGCGAATGCCGCTGATTTTTTCAACTTCGGA 254
Query 238 GCTACTCCACCTGAACCTGAACGCACCGTCGAACTTGCTCAGGAAGGGTTAAGaaaaaat 297
||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 255 GCTCCTCCACCTGAGCCTGAACGCACCGTGGAACTTGCTCAGGAAGGATTAAGAAAAAAT 314
Query 298 gcaaaaaatataaaaagaattaaagagatgatgatagaaaataaattatggaaagaagga 357
||| | |||||||||||||| || ||||| ||||||||||| || || ||||||||||||
Sbjct 315 GCAGAGAATATAAAAAGAATCAAGGAGATTATGATAGAAAAGAAGTTGTGGAAAGAAGGA 374
Query 358 gggaaagAGCTAAGGAGAAGTGCATCAAACATGAAGCAAGACTTTTACTTAATCATCCAA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GGGAAAGAGCTAAGGAGAAGTGCATCAAACATGAAGCAAGACTTTTACTTAATCATCCAA 434
Query 418 GCAAAGCCTCCTACGGATAGACCTCTTTTTAGGTCTCTTTATTCCTCTCTCTTTAATTCA 477
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 435 GCAAAGCCTCCTAAGGATAGACCTCTTTTTAGGTCTCTTTATTCCTCTCTCTTTAACTCA 494
Query 478 ATCACCAAGATGGATTATGCAGCAAGAGATGAAGATGAAACTAAGGTATTGGAGTACTAT 537
||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct 495 ATCACCAAGATGGATTATGCAGCTAGAGATGGAGATGAAACTAAGGTGTTGGAGTACTAT 554
Query 538 AAGAATATTGTTGCAATCCTCGATGATATCTTCCCTCGAATTTAATTTCGAACAATAATA 597
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 555 ATTAATATTGTTGCAATCCTCGATGATATCTTCCCTCGAATTTAATTTCGAACAAT-ATA 613
Query 598 ATATTAATTTAGGCAATCAATTCTCGTTTGTTGTCATGTTCTTTCTTGTCTATCCAAAAG 657
|||||| ||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 614 ATATTAGTTTAGGCAATCGATTCGCATTTGTTGTCATGTTCTTTCTTGTCTATCCAAAAG 673
Query 658 AAAACACTAGTGAAAATACAAGTGACAAGAGAAAAAGTTGGCAAATGTTTTTTGTACGAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AAAACACTAGTGAAAATACAAGTGACAAGAGAAAAAGTTGGCAAATGTTTTTTGTACGAT 733
Query 718 TTATCTAGTC 727
|||||| |||
Sbjct 734 TTATCTTGTC 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35264371194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5