BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484112 Length=727 Score E Sequences producing significant alignments: (Bits) Value AT2G01918.1 | Symbols: PQL3 | PsbQ-like 3 | chr2:424110-425713 ... 1031 0.0 > AT2G01918.1 | Symbols: PQL3 | PsbQ-like 3 | chr2:424110-425713 REVERSE LENGTH=743 Length=743 Score = 1031 bits (558), Expect = 0.0 Identities = 675/730 (92%), Gaps = 13/730 (2%) Strand=Plus/Plus Query 1 AAACGTGAATATATGGCGATTTCAAAGCCACCA-C-C-ACATATCACTTTCTTTCACAAA 57 ||||||||||| ||||||||||||||||||||| | | |||| |||||||||||||||| Sbjct 24 AAACGTGAATACATGGCGATTTCAAAGCCACCACCACTACATTTCACTTTCTTTCACAAT 83 Query 58 CAAGATTCTTCAATTGATACATCGGATTCTAACTTAACATTTTCCATTGATACATCTAGA 117 ||||||||||||||||||||||||||||| |||||| || |||| |||||||||||| Sbjct 84 CAAGATTCTTCAATTGATACATCGGATTCAAACTTAGCACTTTCTATTGATACATCT--- 140 Query 118 AGAAGAAGGAGACGAAGAGACGTTTTGCTCTCAATTTCGGGAACACTAATCCCTCAAGTG 177 || | ||||||||||||||||||||| ||||||| || ||||||||||||||| || Sbjct 141 ---AG-A--AGACGAAGAGACGTTTTGCTCACAATTTCAGGTACACTAATCCCTCAACTG 194 Query 178 TTCTTCTTTGATCGTAAATGGTCAGCTTCTGCGAATGCCGCTGATTTTTTCAACTTCGGC 237 |||||||| ||||| ||| | || |||||||||||||||||||||||||||||||||| Sbjct 195 TTCTTCTTCGATCGCAAACGCTCTTCTTCTGCGAATGCCGCTGATTTTTTCAACTTCGGA 254 Query 238 GCTACTCCACCTGAACCTGAACGCACCGTCGAACTTGCTCAGGAAGGGTTAAGaaaaaat 297 ||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 255 GCTCCTCCACCTGAGCCTGAACGCACCGTGGAACTTGCTCAGGAAGGATTAAGAAAAAAT 314 Query 298 gcaaaaaatataaaaagaattaaagagatgatgatagaaaataaattatggaaagaagga 357 ||| | |||||||||||||| || ||||| ||||||||||| || || |||||||||||| Sbjct 315 GCAGAGAATATAAAAAGAATCAAGGAGATTATGATAGAAAAGAAGTTGTGGAAAGAAGGA 374 Query 358 gggaaagAGCTAAGGAGAAGTGCATCAAACATGAAGCAAGACTTTTACTTAATCATCCAA 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 375 GGGAAAGAGCTAAGGAGAAGTGCATCAAACATGAAGCAAGACTTTTACTTAATCATCCAA 434 Query 418 GCAAAGCCTCCTACGGATAGACCTCTTTTTAGGTCTCTTTATTCCTCTCTCTTTAATTCA 477 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 435 GCAAAGCCTCCTAAGGATAGACCTCTTTTTAGGTCTCTTTATTCCTCTCTCTTTAACTCA 494 Query 478 ATCACCAAGATGGATTATGCAGCAAGAGATGAAGATGAAACTAAGGTATTGGAGTACTAT 537 ||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| Sbjct 495 ATCACCAAGATGGATTATGCAGCTAGAGATGGAGATGAAACTAAGGTGTTGGAGTACTAT 554 Query 538 AAGAATATTGTTGCAATCCTCGATGATATCTTCCCTCGAATTTAATTTCGAACAATAATA 597 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 555 ATTAATATTGTTGCAATCCTCGATGATATCTTCCCTCGAATTTAATTTCGAACAAT-ATA 613 Query 598 ATATTAATTTAGGCAATCAATTCTCGTTTGTTGTCATGTTCTTTCTTGTCTATCCAAAAG 657 |||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||| Sbjct 614 ATATTAGTTTAGGCAATCGATTCGCATTTGTTGTCATGTTCTTTCTTGTCTATCCAAAAG 673 Query 658 AAAACACTAGTGAAAATACAAGTGACAAGAGAAAAAGTTGGCAAATGTTTTTTGTACGAT 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 674 AAAACACTAGTGAAAATACAAGTGACAAGAGAAAAAGTTGGCAAATGTTTTTTGTACGAT 733 Query 718 TTATCTAGTC 727 |||||| ||| Sbjct 734 TTATCTTGTC 743 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35264371194 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5