BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484115
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01930.1 | Symbols: BPC1, BBR, ATBPC1 | basic pentacysteine1... 1459 0.0
AT1G14685.3 | Symbols: BPC2, BBR/BPC2, ATBPC2 | basic pentacyst... 313 3e-84
> AT2G01930.1 | Symbols: BPC1, BBR, ATBPC1 | basic pentacysteine1
| chr2:427121-428839 REVERSE LENGTH=1237
Length=1237
Score = 1459 bits (790), Expect = 0.0
Identities = 1096/1233 (89%), Gaps = 64/1233 (5%)
Strand=Plus/Plus
Query 1 cttctcttt-c-ctctc-tct-tctttctttctctttcccaatctctctcaggtttctct 56
||||||||| | ||||| ||| |||||||||||||||| |||||||||||||| || |||
Sbjct 19 CTTCTCTTTCCTCTCTCTTCTATCTTTCTTTCTCTTTCTCAATCTCTCTCAGG-TT-TCT 76
Query 57 ctcctctctctctcCAGGAGGTCAAAAAATTCCTTAAAGAGCCGTTTAGACCAAACCCAT 116
|| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 77 CT-CTC-CTCTCTCCAGGAGGTCAAAAAATTCTTTAAAGAGCCGTTTAGACCAAACCCAT 134
Query 117 GTTTATAATCA-CAATGGATGATGATGGATTTCGCAATTGGGGATACTATGAACCAGCGG 175
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TTTTATAATCATCAATGGACGATGATGGATTTCGCAATTGGGGATACTATGAACCAGCGG 194
Query 176 CTG---CTTCATTTAAAGGTAATCTTGGTTTGCAGCTTATGTCTACTATTGACCGGAACA 232
||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 195 CTGCTTCTTCGTTTAAAGGTAATCTCGGTTTGCAGCTTATGTCTACTATTGACCGGAACA 254
Query 233 CTAAACCGTTTTTACCCGGGCGTGAATCGAATCTGATGATCGGTTCAAACGGTTCGTATC 292
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 255 CTAAACCGTTTTTACCCGGTCGTGAATCGAATCTTATGATCGGTTCTAACGGTTCGTATC 314
Query 293 ACCCGCGAGAGCACGACATGAACTATAGCTGGATTAATCAACCCAAGGACAACAAGTTCT 352
|| | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 315 ACTCTCGAGAGCAAGACATGAACTATAGCTGGATTAATCAACCAAAGGACAACAAGTTCT 374
Query 353 TCAACATGTTGCCTATAAGCACCCCGAATTACGGGAGTGTGATGTCCGAAACATCTGGTT 412
||||||||||||||||||| || |||| ||| | | |||| |||| |||||||||||||
Sbjct 375 TCAACATGTTGCCTATAAGTACACCGAGTTATAGTAATGTGTTGTCGGAAACATCTGGTT 434
Query 413 CGAATTCGATGCAGATGATACATCAACCGGTTGTGAACTCATCCCGGTTTGAGGAGATTC 472
|||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||
Sbjct 435 CGAATTCGATTCAGATGATACATCAACCGGTTTTGAATTCATCCCGGTTTGAGGAGAATC 494
Query 473 CGATCCCTCCTCGTGAAGAT-GA-AATCGTTCAGCCTAGTAAGAAGAGAAAGATGAGAGG 530
|||| ||||||| || | | || | ||| || ||||||||||||||||||||||
Sbjct 495 CGATTCCTCCTCCTGCTCCTTGTGAAGAG--CAGACTGGTAAGAAGAGAAAGATGAGAGG 552
Query 531 TAGCATCTCAACACCAACAATACCGAAAGCTAAGAAGATGCGTAAACCGAAAGAGGAGCG 590
|||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 553 CAGCATCGCAACACCAACGGTACCGAAAGCTAAGAAGATGCGTAAACCGAAAGAAGAGAG 612
Query 591 CGATGTTGCTAGTAGCAATGTTCA--A-CAGCAGC-GT-T-TGAAACCGGTTAAGAAGAG 644
|||||| ||| | ||||||||| | ||||||| | | |||||||||||||||||||
Sbjct 613 AGATGTTACTAACAACAATGTTCAGCAGCAGCAGCAGCGTGTGAAACCGGTTAAGAAGAG 672
Query 645 TGTTGATCTTGTGATTAATGGTGTGAGTATGGACATTTCTGGTTTACCTGTACCGGTTTG 704
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TGTTGATCTTGTGATTAACGGTGTGAGTATGGACATTTCTGGTTTACCTGTACCGGTTTG 732
Query 705 CACTTGTACTGGAACTCCTCAGCAATGTTACCGTTGGGGATGTGGCGGATGGCAATCCGC 764
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 733 TACTTGTACTGGAACTCCTCAACAATGTTACCGTTGGGGTTGCGGCGGATGGCAATCCGC 792
Query 765 TTGTTGCACAACTAACATTTCGGTGTATCCTTTACCGATGAGTACTAAGAGACGCGGCGC 824
|||||| || |||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 793 TTGTTGTACGACTAACATTTCGGTGTATCCATTACCGATGAGTACTAAGCGACGCGGTGC 852
Query 825 AAGGATTTCAGGTAGGAAGATGAGTCAAGGCGCGTTTAAGAAGGTCCTAGAGAAATTAGC 884
||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||| |
Sbjct 853 AAGGATTTCGGGTAGGAAGATGAGTCAAGGCGCGTTTAAGAAGGTTCTTGAGAAGTTATC 912
Query 885 AACAGAAGGTTATAGCTTTGGGAATGCGATTGATTTGAAGAGTCATTGGGCTAGACATGG 944
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 913 AACAGAAGGTTATAGCTTTGGGAATGCGATTGATTTGAAGTCTCATTGGGCTAGACATGG 972
Query 945 AACCAATAAGTTTGTCACGATCAGATA--GTC--A-----T-T-G---------AT---- 980
||||||||||||||||||||||||||| || | | | | ||
Sbjct 973 AACCAATAAGTTTGTCACGATCAGATAAAGTTTGAAAAGCTCTTGTTTTTCTTCATTGAT 1032
Query 981 CGTGTATATA-CAACAA--CTTGTGACCTTTGTTTC-CCTTCTTCCTCTTCAAGGTAACT 1036
|||||||||| |||||| || ||||||||||||| |||||||| | | ||||||||||
Sbjct 1033 CGTGTATATAACAACAAAACT-GTGACCTTTGTTTTTCCTTCTTC-T-T-CAAGGTAACT 1088
Query 1037 TCTTCGGTTT-AGGGTTTGAATCATATCTTAATTCATATTCT-TTCTT-TTTCTTTTGCA 1093
|||||| ||| |||| |||| ||||||||||||||||||||| || || ||| ||| | |
Sbjct 1089 TCTTCGTTTTTAGGGCTTGA-TCATATCTTAATTCATATTCTGTT-TTGTTTGTTT-GAA 1145
Query 1094 ACTATTTCATTCATCTTTAGGTCTT-AAATGTTGACTTGTAACATTAGATGTTGTTTTGA 1152
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1146 ACTATTTCATTCAGCTTTAGGT-TTGAAATGTTGACTTGTAACATTAGATGTTGTTTTGA 1204
Query 1153 TAAAA--TGTTGTTATGTTAAACAATTTTAATG 1183
||||| ||||||||||||||||||||||||||
Sbjct 1205 TAAAAAATGTTGTTATGTTAAACAATTTTAATG 1237
> AT1G14685.3 | Symbols: BPC2, BBR/BPC2, ATBPC2 | basic pentacysteine
2 | chr1:5042588-5044294 FORWARD LENGTH=1707
Length=1707
Score = 313 bits (169), Expect = 3e-84
Identities = 291/349 (83%), Gaps = 12/349 (3%)
Strand=Plus/Plus
Query 628 AAACCGGTTAAGAAGAGTGTTGATCTT-GTGATTAATGGTGTGAGTATGGACATTTCTGG 686
||||| | |||||| |||||||| ||| ||||| ||||| ||||||||||||||||| ||
Sbjct 994 AAACCCGCTAAGAAAAGTGTTGA-CTTGGTGATCAATGGAGTGAGTATGGACATTTCGGG 1052
Query 687 T-TTACCTGTACCGGTTTGCACTTGTACTGGAACTCCTCAGCAATGTTACCGTTGGGGAT 745
| || ||||| || | |||||||| |||||| ||||||||||||| |||||||||||||
Sbjct 1053 TCTT-CCTGTTCCTATCTGCACTTGCACTGGAGCTCCTCAGCAATGCTACCGTTGGGGAT 1111
Query 746 GTGGCGGATGGCAATCCGCTTGTTGCACAACTAACATTTCGGTGTATCCTTTACCGATGA 805
||||||| ||||| || |||||||| || || ||||| || || |||| ||||| ||||
Sbjct 1112 GTGGCGGTTGGCAGTCTGCTTGTTGTACCACAAACATCTCAATGCATCCATTACCAATGA 1171
Query 806 GTACTAAGA-GACGCGGCGCAAGGATTTCAGGTAGGAAGATGAGTCAAGGCGCGTTTAAG 864
||||||| | | || || || ||||| || || |||||||||||||||||||||||||||
Sbjct 1172 GTACTAA-ACGCCGTGGAGCGAGGATCTCGGGAAGGAAGATGAGTCAAGGCGCGTTTAAG 1230
Query 865 AAGGTCCTAGAGAAA-TTAGCAACAGAAGG-TTATAGCTTTGGGAATGCGATTGAT-TTG 921
||||| || |||||| || || | || || || || |||||||||| |||||||| ||
Sbjct 1231 AAGGTTCTTGAGAAACTT-GCTTCTGATGGGTT-TAACTTTGGGAATCCGATTGATCTT- 1287
Query 922 AAGAGTCATTGGGCTAGACATGGAACCAATAAGTTTGTCACGATCAGAT 970
||||| |||||||| ||||||||||| || ||||| ||||| |||||||
Sbjct 1288 AAGAGCCATTGGGCAAGACATGGAACTAACAAGTTCGTCACAATCAGAT 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5