BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484116
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01940.3 | Symbols: SGR5, ATIDD15 | C2H2-like zinc finger pr... 2761 0.0
AT1G68130.1 | Symbols: AtIDD14, IDD14 | indeterminate(ID)-domai... 387 3e-106
> AT2G01940.3 | Symbols: SGR5, ATIDD15 | C2H2-like zinc finger
protein | chr2:432275-435077 FORWARD LENGTH=1878
Length=1878
Score = 2761 bits (1495), Expect = 0.0
Identities = 1750/1868 (94%), Gaps = 37/1868 (2%)
Strand=Plus/Plus
Query 1 TATGAGAGAGAAATAGGTTTTTTGATGAAGAGTC--AA-A-ATA-GC-AA-AGAGAGCTA 53
||||||||||||||||| ||||||| |||||||| || | ||| | || |||||||||
Sbjct 16 TATGAGAGAGAAATAGG-TTTTTGAAGAAGAGTCAAAATATATACCCAAAGAGAGAGCTA 74
Query 54 GAGTGAGAGAGACCCaaaaaaattaaaaaGCTTTCATCATATTAACATAAGAG-AACTTT 112
||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 75 GAGAGAGAGAGACTCAAGAAAATTAAAAAGCTTTCATCATATTAACATAAGAGAAACTTT 134
Query 113 GAAGAGCCTACCAAAAAG-TTTGAAAAGCCTTTGTTGCAGAAAGCTTAAGAGAGCTTTTT 171
|||||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||
Sbjct 135 GAAGAGCCTAAGAAAAAGTTTTGAAAAGCCTTTGTTGCAGAAAGCTTAAAAGAACTTTTT 194
Query 172 CTCTCCCCCTATATCTCTATTTCTCTTTATTACCTTTCCTCTTCTTTGTAAAGCTGAACC 231
||||||||||||| || ||||||||| ||| |||||||||||||||||||||||
Sbjct 195 CTCTCCCCCTATA--TC----TCTCTTTATCACCCTTCCTCTTCTTTGTAAAGCTGAA-T 247
Query 232 CT-CCACTATCTCTTCTTCTTTCA---TAAttttttttt-GTCTCTGGGTCTTGTTGTTT 286
|| ||||||||||||||||||||| | ||||||||| |||| |||| |||||| |||
Sbjct 248 CTCCCACTATCTCTTCTTCTTTCATTTTTTTTTTTTTTTGGTCTTTGGGCCTTGTTCTTT 307
Query 287 CATCAAATCAATCTCTAGTATCCAAATACAATAAAGTCAAAAAAGAGAGATCAAG-AAAG 345
|||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 308 CATCAAATCAATCTCTAGAATCCAAATACAATAAAGTC-AAAAAGAAAGATCAAGAAAAG 366
Query 346 TATAGTAATTGATGAGAACAGATCAAGTGATGTTGTCCAACAAGAACACAAACACATGTT 405
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TAGAGTAATTGATGAGAACAGATCAAGTGATGTTGTCCAACAAGAACACAAACACATGTT 426
Query 406 GTGTGGTTTCTTCTTCTTCTTCTGATCCTTTCCTCTCCTCATCAGAAAATGGGGTCACCA 465
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 427 GTGTGGTTTCTTCTTCTTCTTCTGATCCTTTCCTCTCCTCTTCAGAAAATGGGGTCACCA 486
Query 466 CCACAAACACATCCACTCAGAAGAGGAAAAGAAGACCTGCAGGTACACCAGATCCAGATG 525
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 487 CCACAAACACATCCACTCAGAAGAGGAAAAGAAGACCTGCAGGTACCCCAGATCCAGATG 546
Query 526 CAGAAGTTGTGTCTTTATCACCAAGAACTCTTCTTGAATCAGACAGATACATATGTGAAA 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 547 CAGAAGTTGTGTCTTTATCACCAAGAACTCTTCTTGAATCAGACAGATACATATGTGAGA 606
Query 586 TCTGTAACCAAGGGTTTCAAAGAGACCAAAATCTCCAGATGCATCGAAGACGTCACAAAG 645
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 607 TCTGTAACCAAGGGTTTCAAAGAGACCAGAATCTCCAGATGCATAGAAGACGTCACAAAG 666
Query 646 TTCCATGGAAGCTTCTTAAAAGAGACAACAACATAGAGGTGAAGAAACGAGTCTATGTTT 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTCCATGGAAGCTTCTTAAAAGAGACAACAACATAGAGGTGAAGAAACGAGTCTATGTTT 726
Query 706 GCCCTGAACCCACTTGTCTTCACCATGATCCTTGTCATGCTCTCGGAGATCTTGTCGGTA 765
|||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 727 GCCCTGAACCCACTTGCCTTCACCATAATCCTTGTCATGCTCTGGGAGATCTTGTCGGCA 786
Query 766 TCAAAAAACATTTCAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAGAGATGCT 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TCAAAAAACATTTCAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAGAGATGCT 846
Query 826 CTAAAGGTTATGCTGTTCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGTACTAGAG 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 CTAAAGGTTATGCTGTTCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGTACTAGAG 906
Query 886 GACATTCTTGTGACTGTGGT--CGTGTCTTCTCC-AGGGTGGAGAGTTTTATTGAACATC 942
|||||||||||||||||||| | | |||||| |||||||||||||||||||||||||
Sbjct 907 GACATTCTTGTGACTGTGGTTTCTTTTCTTCTTTTAGGGTGGAGAGTTTTATTGAACATC 966
Query 943 AAGATAACTGTTCCGTACGGAGAGTTCACCGTGAACCGCCTCAACCGCCACAAACCGCGG 1002
||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 967 AAGATAATTGTTCCGCACGGAGAGTTCACCGTGAACCGCCTCGACCACCACAAACCGCGG 1026
Query 1003 TAGCAGTCCCGGCATGCTCCTCTAGAACCGCCTCAACCGTCAGCACTCCGTCTAGTGAAA 1062
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 TAACAGTCCCGGCATGCTCTTCTAGAACCGCCTCAACCGTCAGCACTCCGTCTAGTGAAA 1086
Query 1063 CCAATTACGGCTGTGCAGTTGCGGTTGCGACTCCTCTACCTCTAGAAGGCCGTCCAATTC 1122
||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1087 CCAATTACGGCGGTACAGTTGCGGTTACGACTCCTCAACCTCTAGAAGGCCGTCCAATTC 1146
Query 1123 ATCAGAGAATCTCATCTTCAATTCTCACCAACTCATCAAACAATCTCAACCTAGAACTCC 1182
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1147 ATCAGAGAATCTCATCTTCAATTCTCACCAACTCATCAAACAATCTCAACCTCGAACTCC 1206
Query 1183 AGCTTCTTCCACTATCATCCAATCAAAACCCTAATCAAGAAAACCAACAACAAAAAGTTA 1242
| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 AACTTCTTCCATTATCGTCGAATCAAAACCCTAATCAAGAAAACCAACAACAAAAAGTTA 1266
Query 1243 AAGAACCATCTCATCATCATAATCAGAATCATGATACCACAAACTTAAACCTTTCCATTG 1302
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1267 AAGAACCATCTCATCATCATAATCATAATCATGATACCACAAACTTAAACCTCTCCATTG 1326
Query 1303 CACCATCATCATCATATCAACATTACAACAACTTTGATCGTATAAAAGAGATTATGGCGA 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 CACCATCATCATCATATCAACATTACAACAACTTTGATCGTATAAAAGAGATTATGGCGA 1386
Query 1363 GCGAGCAAATCATGCAGATGGCGATGAAGGAGAAATCTTATGCAGAGGAAGCTAAAAGAG 1422
|||||||||| ||| |||| ||||||||||||||| |||| || ||||||||||||||||
Sbjct 1387 GCGAGCAAATTATGAAGATAGCGATGAAGGAGAAAGCTTACGCTGAGGAAGCTAAAAGAG 1446
Query 1423 AAGCGAAGAGGCAACGAGAGATAGCGGAAAACGAGTTTGCAAATGCTAAAAAGATAAGGC 1482
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1447 AAGCCAAGAGGCAACGAGAGATAGCGGAAAACGAGTTTGCAAATGCCAAAAAGATTAGGC 1506
Query 1483 AAAAAGCACAAGCTGAACTCGAGAGAGCTAAGTTTTTAAAGGAACAATCGATGAAGAAGA 1542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1507 AAAAAGCACAAGCTGAACTCGAGAGAGCTAAGTTTTTAAAGGAACAATCTATGAAGAAGA 1566
Query 1543 TAAGCTCAACGATCATGCAAGTCACTTGTCAAACTTGTAAAGGACAGTTTCAAGCAGTTG 1602
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1567 TAAGTTCAACGATCATGCAGGTCACTTGTCAAACATGTAAAGGACAGTTTCAAGCAGTTG 1626
Query 1603 CGGTTCCGGCGGCTGCGGCTGACGAAACGTCTCTTGTCGTGAGTTACATGTCGTCAGCGA 1662
|||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1627 CGGTTCCGGCGGCTACGGCTGATGAGACGTCTCTTGTCGTGAGTTACATGTCGTCAGCGA 1686
Query 1663 ATACCGACGGAGAGTTGGAAAATGGATTTTAAGTAAAACaaaaaaaaaGCATAAGATATT 1722
|||| |||||||||||||||||||| ||||||||||||| || |||| |||||||||||
Sbjct 1687 ATACTGACGGAGAGTTGGAAAATGGTTTTTAAGTAAAACCGAAGAAAA-CATAAGATATT 1745
Query 1723 TAAATTAAGGT-AACTTAAATATATTTTTGTGTATTACTTACCCGATCGGGTTGTGTTAA 1781
|||||| |||| ||||| | |||| |||||||||||| ||||| | | |||||||||
Sbjct 1746 TAAATTGAGGTTAACTTTATTATACTTTTGTGTATTAATTACC-G---G--TTGTGTTAA 1799
Query 1782 TTTTTTGAATTACCATATATTATGTCATGGTTGTCATATAGTTGTTAATCTTTGGTCCAA 1841
|||||| || ||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1800 TTTTTTCAACTACCATATATTATGTAATGGTTGTTATATAGTTGTT--TCTTTGGTCCAA 1857
Query 1842 CAGTATTA 1849
|| |||||
Sbjct 1858 CAATATTA 1865
> AT1G68130.1 | Symbols: AtIDD14, IDD14 | indeterminate(ID)-domain
14 | chr1:25532244-25534586 FORWARD LENGTH=1769
Length=1769
Score = 387 bits (209), Expect = 3e-106
Identities = 384/470 (82%), Gaps = 6/470 (1%)
Strand=Plus/Plus
Query 480 ACTCAGAAGAGGAAAAGAAGACCTGCAGGTACACCAGATCCAGATGCAGAAGTTGTGTCT 539
||||||||| ||||| | ||||| || || ||||| ||||| || || || || || |||
Sbjct 355 ACTCAGAAGCGGAAACGGAGACCCGCCGGGACACCGGATCCGGAGGCGGAGGTGGTATCT 414
Query 540 TTATCACCAAGAACTCTT-CTTGAATCAGA-CAGATACATATGTGAAATCTGTAACCAAG 597
|||||||||||||| || || ||||| || | | ||| ||||||| |||||||||||||
Sbjct 415 TTATCACCAAGAAC-GTTACTAGAATCGGATC-GGTACGTATGTGAGATCTGTAACCAAG 472
Query 598 GGTTTCAAAGAGACCAAAATCTCCAGATGCATCGAAGACGTCACAAAGTTCCATGGAAGC 657
|||||||||| ||||| ||||| ||||||||| ||||||| || ||||||||||||||||
Sbjct 473 GGTTTCAAAGGGACCAGAATCTACAGATGCATAGAAGACGACATAAAGTTCCATGGAAGC 532
Query 658 TTCTTAAAAGAGACAACAACATA-GAGGTGAAGAAACGAGTCTATGTTTGCCCTGAACCC 716
||||||||||||| | |||| | || |||| |||| ||||||| || || || || ||
Sbjct 533 TTCTTAAAAGAGAGACCAAC-GAGGAAGTGAGGAAAAGAGTCTACGTCTGTCCGGAGCCG 591
Query 717 ACTTGTCTTCACCATGATCCTTGTCATGCTCTCGGAGATCTTGTCGGTATCAAAAAACAT 776
|| ||||| ||||| | ||||| || || ||||||||||| || || ||||| |||||
Sbjct 592 ACATGTCTCCACCACAACCCTTGCCACGCGCTCGGAGATCTCGTGGGAATCAAGAAACAC 651
Query 777 TTCAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAGAGATGCTCTAAAGGTTAT 836
||| || | |||||||||||||| ||||||||| | || ||| ||||||| ||||| ||
Sbjct 652 TTCCGACGGAAACATAGTAACCACAAGCAATGGATCTGCGAGCGATGCTCAAAAGGCTAC 711
Query 837 GCTGTTCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGTACTAGAGGACATTCTTGT 896
|| |||||||||||||||||||||||||||||||| ||||| ||| | || || || |||
Sbjct 712 GCAGTTCAATCTGATTACAAAGCTCATCTCAAAACCTGTGGCACTCGCGGCCACTCCTGT 771
Query 897 GACTGTGGTCGTGTCTTCTCCAGGGTGGAGAGTTTTATTGAACATCAAGA 946
||||| || || || || ||||| ||||| ||||| || || || |||||
Sbjct 772 GACTGCGGCCGAGTTTTTTCCAGAGTGGAAAGTTTCATAGAGCACCAAGA 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91515593535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5