BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484119
Length=3226
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01950.1 | Symbols: VH1, BRL2 | BRI1-like 2 | chr2:440636-44... 5182 0.0
> AT2G01950.1 | Symbols: VH1, BRL2 | BRI1-like 2 | chr2:440636-444276
REVERSE LENGTH=3641
Length=3641
Score = 5182 bits (2806), Expect = 0.0
Identities = 3091/3231 (96%), Gaps = 10/3231 (0%)
Strand=Plus/Plus
Query 1 ATGACTACTTCACCAATCCGGGTTCGGATCCGGACTCGGATCCAAATCTCCTTCATCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 41 ATGACTACTTCACCAATCCGGGTTCGGATCCGGACTCGGATCCAAATCTCCTTCATCTTC 100
Query 61 CTCCTCACCCATTTCTCTCTATCTTCTTCCTCCGACCAATCTTCACTCAAAACCGACTCA 120
||||| |||||| |||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 101 CTCCTTACCCATCTCTCACAATCTTCCTCCTCCGACCAATCTTCACTCAAAACCGACTCA 160
Query 121 TTATCACTCCTCTCTTTCAAATCAATGATCCAAGACGATCCAAACAACATTCTCTCTAAT 180
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 161 TTATCACTCCTCTCTTTCAAAACAATGATCCAAGATGATCCAAACAACATTCTCTCAAAC 220
Query 181 TGGACACCTCGTAAATCGCCTTGTCAATTCTCCGGCGTCACTTGTCTCGGTGGAAGAGTC 240
||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 221 TGGTCACCTCGTAAATCCCCTTGTCAATTCTCCGGCGTCACTTGTCTCGGAGGAAGAGTC 280
Query 241 ACCGAGATTAATCTCTCCGGTAGTGGCCTCTCCGGAATAGTCTCCTTCAATGCTTTTACC 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 281 ACCGAGATTAATCTCTCCGGTAGTGGCCTCTCCGGAATCGTCTCCTTCAATGCTTTCACC 340
Query 301 TCTCTTGAttctctctctgttctcaaactctcagagaactttttcgttttaaactcaacc 360
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 341 TCTCTTGATTCTCTCTCTGTTCTCAAACTCTCAGAGAACTTCTTCGTCTTAAACTCAACC 400
Query 361 tctcttcttcttctTCCCTTAAGCCTAAC-CCTCCTCGAACTCTCTTCCTCCGGTTTAAT 419
||||||||||||||||| |||| |||||| | | ||||||||||||||||||||||||||
Sbjct 401 TCTCTTCTTCTTCTTCCTTTAACCCTAACTCAT-CTCGAACTCTCTTCCTCCGGTTTAAT 459
Query 420 CGGAATCCTCCCTGAAAATTTCTTCTCCAAATACTCAAATCTTATTTCCATCACTCTCTC 479
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 460 CGGAACCCTCCCTGAAAATTTCTTCTCCAAATACTCAAATCTTATTTCCATCACCCTCTC 519
Query 480 TTACAATAACTTCACCGGAAAGTTACCTAATGATCTTTTCTTAAGCAGCAAGAAACTCCA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TTACAATAACTTCACCGGAAAGTTACCTAATGATCTTTTCTTAAGCAGCAAGAAACTCCA 579
Query 540 AACCCTTGATCTTTCTTACAACAACATAACCGGTTCAATCTCCGGTTTAACCATTCCTCT 599
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 580 AACCCTTGATCTTTCTTACAACAACATTACCGGTCCAATCTCCGGTTTAACCATTCCTCT 639
Query 600 CTCTTCTTGCGTCT-CTTTATCGTTTCTTGATTTCTCCGGTAACAGTATCTCCGGTTATA 658
||||||||||||| | | | | | ||| |||||||||||||||||||||||||| ||||
Sbjct 640 TTCTTCTTGCGTCTCCATGA-CCTATCTCGATTTCTCCGGTAACAGTATCTCCGGCTATA 698
Query 659 TCCCTGACTCACTCATCAACTGCACCAACCTCAAAAGCTTGAATCTTTCTTACAACAACT 718
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 TCTCTGACTCACTCATCAACTGCACCAACCTCAAAAGCTTGAATCTTTCTTACAACAACT 758
Query 719 TCGATGGGCAGATTCCAAAATCTTTCGGTGAGCTAAAACTCTTACAAAGTTTGGATCTTT 778
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 759 TCGATGGGCAGATTCCAAAATCTTTCGGTGAGCTTAAACTCTTACAAAGTTTGGATCTTT 818
Query 779 CGCATAACCGACTCACCGGTTGGATCCCACCGGAGATCGGAGATACTTGCCGGTCATTAC 838
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 819 CTCATAACCGACTCACCGGTTGGATCCCGCCGGAGATCGGAGATACTTGCCGGTCATTAC 878
Query 839 AAAACCTCCGGCTTTCTTACAACAACTTCAGTGGTGTGATCCCTGAGTCGTTGTCCTCAT 898
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 879 AAAACCTCCGGCTTTCTTACAACAACTTCACTGGTGTGATCCCTGAGTCGTTGTCCTCAT 938
Query 899 GTTCTTGGCTACAAAGTCTTGACCTTTCCAACAACAACATCTCCGGTCCGTTTCCGAACA 958
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 939 GTTCTTGGCTACAAAGTCTTGACCTTTCAAACAACAACATCTCCGGTCCGTTTCCGAACA 998
Query 959 CTATCCTCCGGAGTTTTGGATCTCTTCAAATCTTACTTCTCAGCAACAACTTAATCTCCG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 CTATCCTCCGGAGTTTTGGATCTCTTCAAATCTTACTTCTCAGCAACAACTTAATCTCCG 1058
Query 1019 GTGAGTTTCCGACTTCAATCTCTGCTTGCAAGAGTTTGAGAATCGCTGATTTCAGCTCGA 1078
|||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 1059 GTGACTTTCCGACTTCAATCTCTGCTTGTAAGAGCTTGAGAATCGCTGACTTCAGCTCGA 1118
Query 1079 ATCGATTCTCCGGCGTGATTCCACCGGATTTATGTCCCGGAGCAGCTTCACTAGAAGAGC 1138
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1119 ATCGATTCTCCGGTGTGATTCCACCGGATTTATGTCCCGGAGCAGCTTCATTAGAAGAGC 1178
Query 1139 TAAGAATCCCGGATAATCTCGTCACCGGAGAGATTCCTCCGGCGATATCTCAGTGCTCAG 1198
||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1179 TAAGACTCCCGGATAATCTCGTCACCGGAGAGATTCCACCGGCGATATCTCAATGCTCTG 1238
Query 1199 AGCTTCGAACGATTGATCTCAGTCTCAATTATCTCAACGGTACAATCCCACCGGAGATCG 1258
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 AGCTACGAACGATTGATCTCAGTCTCAATTATCTCAACGGTACAATCCCACCGGAGATCG 1298
Query 1259 GAAACCTCCAGAAACTCGAGCAATTCATCGCTTGGTACAACAACCTCGCCGGAAAAATCC 1318
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||
Sbjct 1299 GAAACCTCCAGAAACTCGAGCAATTCATAGCTTGGTACAACAACATCGCCGGAGAAATCC 1358
Query 1319 CACCGGAGATCGGAAAACTACAAAACCTAAAAGATTTGATCCTCAACAACAATCAACTCA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 CACCGGAGATCGGAAAACTACAAAACCTAAAAGATTTGATCCTCAACAACAATCAACTCA 1418
Query 1379 CCGGAGAAATCCCACCGGAGTTTTTCAATTGCAGTAACATCGAATGGATCTCATTCACAA 1438
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1419 CCGGAGAAATCCCACCGGAATTTTTCAATTGCAGTAACATCGAATGGGTCTCATTCACAA 1478
Query 1439 GCAACAGATTAACCGGAGAAGTACCTAAAGATTTTGGAATCCTTTCCCGGTTAGCTGTTC 1498
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 1479 GCAACAGATTAACCGGAGAAGTGCCTAAAGATTTCGGAATCCTTTCCCGGTTAGCCGTTC 1538
Query 1499 TTCAGCCCGGAAACAACAATTTCACCGGAGAAATCCCACCGGAGCTAGGAAAATGCACAA 1558
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 TTCAGCTCGGTAACAACAATTTCACCGGAGAAATCCCACCGGAGCTAGGAAAATGCACAA 1598
Query 1559 CTCTGGTTTGGCTTGATCTTAACACAAACCACTTAACCGGTGAAATCCCACCCCGGTTAG 1618
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1599 CTCTGGTTTGGCTTGATCTTAACACAAACCACTTAACCGGTGAAATCCCTCCCCGGTTAG 1658
Query 1619 GTCGTCAACCCGGTTCAAAAGCTCTTTCCGGTTTACTCTCAGGCAACACAATGGCTTTTG 1678
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1659 GTCGTCAACCCGGTTCAAAAGCACTTTCCGGTTTACTCTCAGGAAACACAATGGCTTTTG 1718
Query 1679 TTAGAAACGTTGGAAACTCATGTAAAGGTGTTGGAGGTTTGGTTGAGTTCTCAGGGATCA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 TTAGAAACGTTGGAAACTCATGTAAAGGTGTTGGAGGTTTGGTTGAGTTCTCAGGGATCA 1778
Query 1739 GACCAGAGAGGCTTCTTCAGATTCCTTCTCTTAAGAGCTGTGACTTCACAAGAATGTATT 1798
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1779 GACCAGAGAGGCTTCTTCAGATTCCATCTCTTAAAAGCTGTGACTTCACAAGAATGTATT 1838
Query 1799 CAGGTCCAATTCTGAGTCTTTTCACAAGATATCAAACCATTGAGTATCTTGATCTTTCTT 1858
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 CAGGTCCAATTTTGAGTCTATTCACAAGATATCAAACCATTGAGTATCTTGATCTTTCTT 1898
Query 1859 ATAATCAGCTTCGAGGTACAATCCCAGATGAGATTGGAGAAATGATTGCTCTTCAAGTTC 1918
||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1899 ATAATCAGCTTAGAGGTAAAATCCCTGATGAGATTGGAGAAATGATTGCTCTTCAAGTTC 1958
Query 1919 TTGAGCTTTCTCATAATCAACTCTCCGGCGAGATTCCTTTTACGATTGGTCAGCTCAAGA 1978
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1959 TTGAGCTTTCTCATAATCAACTCTCCGGCGAGATTCCGTTTACGATTGGTCAGCTCAAGA 2018
Query 1979 ATCTCGGTGTGTTCGATGCTTCGGATAATCGGTTACAGGGTCAAATCCCTGAATCTTTCT 2038
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2019 ATCTCGGTGTTTTCGATGCTTCGGATAATCGGTTGCAGGGTCAAATCCCTGAATCTTTCT 2078
Query 2039 CGAATTTGTCTTTCTTGGTGCAGATTGATTTGTCGAATAACGAGTTGACCGGTCCGATTC 2098
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2079 CGAATTTGTCTTTCTTGGTGCAGATTGATTTGTCGAATAACGAGTTAACTGGTCCGATTC 2138
Query 2099 CTCAGAGAGGTCAGCTTA-GCACGCTTCCAGCGACACAGTATGCGAATAATCCGGGACTT 2157
|||||||||||||| ||| |||||||||| ||||| ||||| |||||||||||||| |||
Sbjct 2139 CTCAGAGAGGTCAG-TTAAGCACGCTTCCGGCGACTCAGTACGCGAATAATCCGGGGCTT 2197
Query 2158 TGCGGTGTTCCTTTACCGGAGTGTAAGAATGGAAACAATCAGCTTCCTGCTGGACCGGAG 2217
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 2198 TGCGGTGTTCCTTTACCGGAATGTAAGAATGGAAACAATCAGCTTCCTGCTGGAACAGAG 2257
Query 2218 GAAAGGAAACGTGCTAAGCACGGAACTACGGCTGCTTCTTGGGCGAATAGTATTGTTTTG 2277
||| |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 2258 GAAGGGAAACGTGCTAAGCACGGAACTAGGGCAGCTTCTTGGGCGAATAGCATTGTTTTG 2317
Query 2278 GGAGTGTTGATTTCCGCTGCTTCGGTTTGTATTTTGATCGTTTGGGCGATTGCGGTTCGT 2337
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2318 GGAGTGTTGATTTCCGCTGCTTCGGTTTGTATTTTAATCGTTTGGGCGATTGCGGTTCGT 2377
Query 2338 GCGAGGAAGAGAGACGCGGAAGATGCAAAGATGCTTCACAGTTTGCAGGCGGTTAATTCC 2397
||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2378 GCGAGGAGGAGAGATGCGGATGATGCGAAGATGCTTCACAGTTTGCAGGCGGTTAATTCC 2437
Query 2398 GCCACGACATGGAAGATTGAGAAGGAGAAAGAGCCGTTGAGTATTAATGTAGCGACGTTT 2457
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2438 GCCACTACATGGAAGATAGAGAAGGAGAAAGAGCCGTTGAGTATTAATGTAGCGACGTTT 2497
Query 2458 CAGCGACAGTTGAGGAAGCTTAAGTTTTCGCAGCTTATCGAGGCTACAAATGGATTCTCG 2517
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2498 CAGCGACAGTTGAGAAAGCTTAAGTTTTCGCAGCTTATCGAGGCGACAAACGGATTCTCA 2557
Query 2518 GCCGCGAGTATGATTGGACATGGTGGATTCGGCGAGGTATTCAAAGCGACGCTTAAAGAT 2577
|||||||||||||| ||||| || |||||||| ||||| || || ||||||||||||||
Sbjct 2558 GCCGCGAGTATGATCGGACACGGCGGATTCGGTGAGGTTTTTAAGGCGACGCTTAAAGAC 2617
Query 2578 GGTTCTTCCGTGGCAATCAAGAAGCTCATTAGACTTAGTTGTCAAGGAGATCGAGAGTTT 2637
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2618 GGGTCTTCCGTGGCGATCAAGAAGCTCATTAGACTTAGTTGTCAAGGAGATCGAGAGTTC 2677
Query 2638 ATGGCGGAAATGGAAACCTTAGGGAAGATTAAACACCGAAACCTTGTACCGCTCTTGGGA 2697
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2678 ATGGCAGAAATGGAAACCTTAGGGAAGATCAAACACCGAAACCTCGTACCGCTCTTGGGA 2737
Query 2698 TACTGTAAAATTGGTGAAGAGAGATTGCTCGTTTACGAGTTTATGCAATACGGAAGCCTC 2757
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2738 TACTGTAAAATCGGGGAAGAGAGATTGCTTGTTTACGAGTTTATGCAATACGGAAGCCTC 2797
Query 2758 GAGGAGGTGCTTCATGGACCGAGAACAGGCGAAAAACGAAGGATCTTGAACT-GGGAAGA 2816
|||||||||||||| ||||| ||||||||||||||||| ||||| || | | |||||||
Sbjct 2798 GAGGAGGTGCTTCACGGACCAAGAACAGGCGAAAAACGGAGGATTTT-AGGTTGGGAAGA 2856
Query 2817 -ACGGAAAAAGATTGCGAAAGGAGCAGCAAAAGGGCTTTGCTTCTTGCATCACAATTGTA 2875
| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 2857 GA-GGAAAAAGATTGCAAAAGGAGCAGCAAAAGGACTTTGTTTCTTGCATCACAATTGTA 2915
Query 2876 TCCCTCACATAATCCACCGCGATATGAAATCGAGCAACGTGCTTCTCGATCAAGACATGG 2935
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2916 TCCCTCACATAATCCACCGCGACATGAAATCGAGCAACGTGCTTCTCGATCAAGACATGG 2975
Query 2936 AAGCAAGAGTTTCAGATTTCGGAATGGCGAGACTGATCAGCGCGTTAGACACACATTTGA 2995
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2976 AAGCAAGAGTTTCAGATTTCGGAATGGCGAGACTGATCAGCGCATTAGACACACATTTGA 3035
Query 2996 GTGTAAGTACCTTGGCAGGCACGCCAGGTTACGTACCACCAGAGTATTACCAGAGTTTCA 3055
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3036 GTGTAAGTACCTTGGCAGGCACGCCAGGTTACGTACCACCAGAGTATTACCAAAGTTTCA 3095
Query 3056 GATGTACCGCGAAAGGCGACGTGTACTCAGTCGGAGTAGTGATGCTCGAGATTTTAAGCA 3115
|||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 3096 GATGTACCGCAAAAGGCGACGTGTACTCAATCGGAGTAGTGATGCTCGAGATCTTAAGCG 3155
Query 3116 GGAAAAGACCAACGGATAAAGAAGAGTTTGGTGAAACGAATTTAGTTGGTTGGTCGAAGA 3175
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 3156 GGAAAAGACCAACGGATAAAGAAGAGTTTGGTGATACGAATTTAGTAGGTTGGTCGAAGA 3215
Query 3176 TGAAGGCAAGAGAAGGGAAACATATGGAAGTGATTGATGAAGACCTTCTAA 3226
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3216 TGAAGGCAAGAGAAGGGAAACACATGGAAGTGATTGATGAAGACCTTCTAA 3266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160484050657
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5