BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484122
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01990.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1101 0.0
> AT2G01990.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G14630.1);
Has 118 Blast hits to 118 proteins in 14 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:465001-466724
REVERSE LENGTH=907
Length=907
Score = 1101 bits (596), Expect = 0.0
Identities = 773/857 (90%), Gaps = 18/857 (2%)
Strand=Plus/Plus
Query 1 ATACATATGGATTCATGAATGGATCGCCGGAACAGAGTTTCCGATCACCGGAGATGGATT 60
|||||| ||| ||||||||| ||||||||||||| | |||| ||||||||||||| ||||
Sbjct 56 ATACATGTGGTTTCATGAATAGATCGCCGGAACATATTTTCGGATCACCGGAGATTGATT 115
Query 61 ACTCCGACGTCTCCACAGGTTACCTCGAAGACGCAATTATCGAATCTGGTGAGAGAAGCA 120
||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 116 ACTCCGACGTCTCCACAGGTTACCTCGAAGACGCACTTATCGAGTCCGGTGAGAGAAGCA 175
Query 121 AAAGGAGACGTCTCTTGTTCGAGGATCCGTCAAAATCCTTGAAGGATAATTATAT-GCAG 179
||||||||||||||||||||||||||||||| ||||| || || ||| || || | ||||
Sbjct 176 AAAGGAGACGTCTCTTGTTCGAGGATCCGTCCAAATCTTTTAACGATGATGAT-TCGCAG 234
Query 180 AACGATTGGGGCCTGCATGAGAGTTATAGCTGTTTGAATAGTCAGTTTGTCACTCCACAT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 AACGATTGGGGCCTGCATGAGAGTTATAGCTGTTTGAATAGTCAGTTTGTCACTCCACAT 294
Query 240 GTTAATACAGGTGCACGTAAAATTGGAGTTAGTTACTTTGAAGAGCCAATATCGACA-GC 298
||||| ||||||| ||||| || |||||| ||||||| | | ||| | ||||||| | |
Sbjct 295 GTTAACACAGGTGAACGTATAAGTGGAGTCAGTTACTGTCAGGAGACGATATCGA-ATGT 353
Query 299 TTACGAGTCTCCCGACACTTCTGTTTCTTCCGGGGAAATTTTTGTCCGAGAAAAATCTTT 358
|||||||||||||||||||||||| |||| | |||||| ||| ||||||||||||
Sbjct 354 TTACGAGTCTCCCGACACTTCTGTCTCTTATGACAAAATTTATGTTCGAGAAAAATCTCC 413
Query 359 AACCGAACCATCCTCTTCTAACTGTGGTAATAAGAACAAAAGACTTATCACGAAACTAGT 418
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 414 AACCGAACCATCCTCATCCAACTGTGGTAATAAGAACAAAAGACTAATCACGAAACTAGT 473
Query 419 GTATCCATTTGGATTGGTGAAACCAGGTGGTCGAGAAAATGATGTAACCCTAAATGATAT 478
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GTACCCATTTGGATTGGTGAAACCAGGTGGTCGAGAAAATGATGTAACCCTAAATGATAT 533
Query 479 CAACGAGAGAATTTTGATGGCTCCGTCTCGACC-AGTTAGACATCCGGTCGGAGACTTTG 537
|||||||||||||||||||||||| |||||||| | || |||||||||| ||||||||||
Sbjct 534 CAACGAGAGAATTTTGATGGCTCCATCTCGACCGA-TTCGACATCCGGTAGGAGACTTTG 592
Query 538 TCTCTCGACCATGCGTCTCTGGCAGCGGACCTGGCCTCTCCGGAAAGGCCGTGGTGGCTC 597
|||||||||||| ||||||||| | ||||| |||||||||||||| || ||||||||||
Sbjct 593 CCTCTCGACCATGTGTCTCTGGCCGTGGACCGGGCCTCTCCGGAAAAGCTGTGGTGGCTC 652
Query 598 TTACTAAGATCCAAACACAAGGGAGGGGTACAATTACCATAATCAGAACTAAGGGGTAAA 657
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 653 TTACTAAGATCCAAACACAAGGGAGGGGTACAATTACTATAATCAGAACTAAGGGGTAAA 712
Query 658 CTGTGTAATATTGGTAATTAGTTGGGGATGTTAT----GTGTAATATAAATGACGCTTTA 713
|||||| |||||||||||||||||||| |||||| |||||| |||||||| | ||||
Sbjct 713 CTGTGTTATATTGGTAATTAGTTGGGGCTGTTATATATGTGTAACATAAATGAGGTTTTA 772
Query 714 GAAAGCCAAAGTGATCAACTG-CTATGAGAGAAACTTTCAACTTTCGTATAGAAAAAAGT 772
|||||| |||||||||| || ||||||||||||||||||||||| ||||||||||| |
Sbjct 773 GAAAGCTAAAGTGATCAT-TGGCTATGAGAGAAACTTTCAACTTTTGTATAGAAAAA--T 829
Query 773 TAGGCGAGGTAAATTTTGAA-A--A-TGTTGTACAATATCCGGTGGGTTATTCTTATGAG 828
||||||||||||||||||| | | |||||||||||||||||||| | ||||| |||||
Sbjct 830 CAGGCGAGGTAAATTTTGAAGATCAATGTTGTACAATATCCGGTGGATCATTCTAATGAG 889
Query 829 AATAGTTATATTATCTT 845
||| ||| |||||||||
Sbjct 890 AATTGTTTTATTATCTT 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41192000540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5