BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484123
Length=1763
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02010.1 | Symbols: GAD4 | glutamate decarboxylase 4 | chr2:... 2638 0.0
AT2G02000.1 | Symbols: GAD3 | glutamate decarboxylase 3 | chr2:... 1903 0.0
> AT2G02010.1 | Symbols: GAD4 | glutamate decarboxylase 4 | chr2:474165-476594
REVERSE LENGTH=1791
Length=1791
Score = 2638 bits (1428), Expect = 0.0
Identities = 1665/1779 (94%), Gaps = 17/1779 (1%)
Strand=Plus/Plus
Query 1 CATTCTTCTTCAACTACaaaacaaaaa-ac-attacacattctgtcttcttgttcatttc 58
||||||||||||||||||||||||||| || | |||||||||| || |||||||||||||
Sbjct 4 CATTCTTCTTCAACTACAAAACAAAAACACTACTACACATTCTTTCCTCTTGTTCATTTC 63
Query 59 aaaaccaaaaatcaaagttc-aa----aaa-aaaaGATGGTTTTGTCTAAGACAGCTTCG 112
||| |||||||||||||||| || ||| || | ||||||||||||||||||| |||
Sbjct 64 AAACCCAAAAATCAAAGTTCGAAGTTGAAAGAAGACATGGTTTTGTCTAAGACAGTTTCC 123
Query 113 GAATCCGATGTCTCAATCCATTCAACTTTTGCTTCTCGTTACGTCCGGAACTCTCTTCCA 172
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 124 GAATCTGATGTCTCAATCCATTCAACTTTTGCTTCTCGTTACGTCCGCAACTCTCTTCCA 183
Query 173 CGATTCGAAATGCCTGAGAATTCAATCCCAAAGGAAGCAGCGTACCAAATCATCAACGAC 232
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 184 CGATTCGAAATGCCTGAGAACTCAATCCCAAAAGAAGCAGCTTACCAAATCATCAACGAC 243
Query 233 GAGCTAATGCTCGATGGTAACCCGAGGCTGAACCTAGCCTCCTTTGTGACCACATGGATG 292
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 244 GAGCTAATGCTCGATGGTAACCCAAGGCTGAACCTAGCTTCCTTCGTGACCACATGGATG 303
Query 293 GAGCCAGAGTGTGACAAGCTCATGATGGAGTCCATCAACAAGAACTACGTCGACATGGAC 352
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GAGCCAGAATGTGACAAGCTCATGATGGAGTCCATCAACAAGAACTACGTCGACATGGAC 363
Query 353 GAGTACCCCGTCACCACTGAGCTTCAGAACCGATGTGTCAACATGATCGCGCGTCTCTTC 412
|||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 364 GAGTACCCTGTCACCACTGAGCTTCAGAACCGATGTGTTAACATGATAGCACGTCTCTTC 423
Query 413 AACGCGCCGCTTGGTGATGGTGAAGCTGCCGTGGGTGTTGGCACCGTTGGATCGTCAGAG 472
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||
Sbjct 424 AACGCGCCGCTTGGTGACGGTGAAGCTGCCGTTGGTGTTGGCACCGTCGGATCGTCGGAG 483
Query 473 GCGATTATGTTGGCGGGTTTGGCTTTCAAGAGACAGTGGCAGAATAAGCGTAAGGCCCAA 532
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 484 GCGATTATGTTGGCCGGTTTGGCTTTTAAGAGACAATGGCAGAATAAGCGTAAGGCCCAA 543
Query 533 GGGCTTCCTTATGATAAGCCCAACATTGTAACCGGAGCCAATGTCCAGGTTTGCTGGGAG 592
||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 544 GGGCTTCCTTATGATAAGCCCAATATCGTAACCGGTGCTAATGTCCAGGTTTGCTGGGAG 603
Query 593 AAATTCGCAAGGTATTTCGAAGTGGAGCTTAAGGAAGTGAATCTAAGAGAAGATTATTAC 652
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 604 AAATTCGCAAGGTATTTCGAAGTGGAGCTTAAGGAAGTGAACCTAAGAGAAGACTATTAC 663
Query 653 GTGATGGACCCTGTAAAGGCGGTCGAAATGGTCGATGAGAACACAATCTGCGTCGCGGCC 712
|||||||||||||||||||||||||||||||| || || |||||||| || ||||| |||
Sbjct 664 GTGATGGACCCTGTAAAGGCGGTCGAAATGGTAGACGAAAACACAATTTGTGTCGCTGCC 723
Query 713 ATCCTCGGTTCGACACTAACCGGTGAATTCGAAGATGTTAAGCTCCTCAACGACCTCCTT 772
||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 724 ATCCTCGGTTCAACGTTAACCGGTGAATTCGAAGACGTTAAGCTCCTCAACGACCTCCTT 783
Query 773 GTCGAGAAAAATAAGCAAACCGGATGGGACACGCCGATCCACGTTGACGCAGCAAGTGGT 832
||||||||||| ||||||||||||||||||||||| || ||||| |||||||| ||||||
Sbjct 784 GTCGAGAAAAACAAGCAAACCGGATGGGACACGCCAATACACGTGGACGCAGCGAGTGGT 843
Query 833 GGGTTTATTGCTCCCTTCTTGTACCCGGAGTTGGAATGGGATTTCCGGCTACCGTTGGTT 892
|||||||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 844 GGGTTTATTGCTCCGTTCTTGTATCCGGAGCTGGAGTGGGATTTCCGGCTACCGTTGGTT 903
Query 893 AAGAGTATTAATGTGAGTGGTCACAAATACGGTTTGGTATACGCCGGTATCGGTTGGGTT 952
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 904 AAGAGTATTAATGTGAGTGGTCACAAATACGGTTTGGTTTACGCCGGTATTGGTTGGGTT 963
Query 953 GTATGGAGAACCAAAACCGATTTGCCTGATGAACTTATTTTCCATATCAATTATCTTGGC 1012
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 964 GTATGGAGAACCAAAACCGATTTGCCTGATGAACTTATCTTCCATATCAATTATCTTGGC 1023
Query 1013 GCTGATCAACCAACCTTCACACTTAACTTCTCCAAAGGTTCAAGTCAAGTGATTGCTCAG 1072
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1024 GCTGATCAACCAACCTTTACACTCAACTTCTCCAAAGGTTCAAGTCAAGTGATTGCTCAG 1083
Query 1073 TACTACCAGCTGATTCGTCTTGGATTCGAGGGATATCGCAATGTGATGGATAATTGTCGG 1132
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1084 TACTACCAGCTGATTCGTCTTGGATTCGAGGGTTATCGCAATGTGATGGATAATTGTCGG 1143
Query 1133 GAAAACATGATGGTGCTAAGACAAGGATTAGAGAAAACGGGACGTTTTAACATTGTCTCT 1192
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1144 GAAAACATGATGGTACTAAGACAAGGATTAGAGAAAACGGGACGTTTTAAAATCGTCTCC 1203
Query 1193 AAAGAAAATGGTGTTCCATTAGTGGCGTTTTCTCTCAAAGACAGTAGCCGCCACAACGAG 1252
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1204 AAAGAAAACGGTGTTCCGTTAGTGGCGTTTTCTCTCAAAGATAGTAGCCGCCACAACGAG 1263
Query 1253 TTCGAGGTAGCCGAAACGCTCCGCCGCTTTGGCTGGATCGTTCCGGCCTACACGATGCCT 1312
|||||||| ||| | || ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1264 TTCGAGGTGGCCCATACACTCCGTCGCTTCGGCTGGATCGTTCCGGCCTACACGATGCCT 1323
Query 1313 GCGGATGCGCAACATGTCACTGTCCTACGAGTTGTTATCCGAGAAGATTTCTCTAGAACC 1372
||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1324 GCGGATGCGCAGCATGTCACTGTCCTTCGAGTTGTTATCCGAGAAGATTTCTCTCGAACC 1383
Query 1373 TTAGCCGAGAGATTGGTAGCCGATTTCGAGAAGGTTCTACACGAGCTCGATACGCTTCCC 1432
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1384 TTAGCCGAGAGATTGGTAGCTGATTTCGAGAAGGTTCTACACGAGCTCGATACGCTTCCG 1443
Query 1433 GCGAGGATTCACGCCAAGATGGCTAATGGAAAAGTTAATGGCGTTAAGAAGACGCCAGAG 1492
|||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1444 GCGAGGGTTCACGCCAAGATGGCTAATGGAAAAGTTAACGGTGTTAAGAAGACGCCAGAG 1503
Query 1493 GAGACGCAGAGAGAAGTCACGTCCTACTGGAAGAAGTTGTTGGAGACTAAGAAGACCAAC 1552
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1504 GAGACGCAGAGAGAAGTCACGGCCTACTGGAAGAAGTTGTTGGAGACTAAGAAGACCAAC 1563
Query 1553 AAGAACACAATTTGCTGATAAGATTATTTAATAAACTATTATTGTTATTTGTTTTGTCCT 1612
|||||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||
Sbjct 1564 AAGAACACAATTTGCTAATAAGATTATTTTATAAACTAATATTATTATTTGTTTTGTCCT 1623
Query 1613 TAATTACGCTCCAT--TT--GGACCTTTTTCTTTCAT-GCTGTTTGgattattattt-tt 1666
||||| |||||||| || ||||||||||||||| | ||||||||||||||| ||| ||
Sbjct 1624 TAATTGCGCTCCATAATTATGGACCTTTTTCTTTCTTTGCTGTTTGGATTATTTTTTGTT 1683
Query 1667 tat-tttttg--aagttttgtgatttgatattgctgatgaagagtgattttttatgggtt 1723
| | |||||| |||||||| |||||||||||||||||| |||||||||||| |||| |
Sbjct 1684 TTTCTTTTTGTTAAGTTTTGGGATTTGATATTGCTGATGGAGAGTGATTTTTAATGGATA 1743
Query 1724 tatACTAAATAAATGAAatatatatatatatatatTTTT 1762
|| ||||||| ||||||| ||||||||||||||||||||
Sbjct 1744 TACACTAAATCAATGAAAAATATATATATATATATTTTT 1782
> AT2G02000.1 | Symbols: GAD3 | glutamate decarboxylase 3 | chr2:469370-472070
REVERSE LENGTH=1711
Length=1711
Score = 1903 bits (1030), Expect = 0.0
Identities = 1327/1470 (90%), Gaps = 22/1470 (1%)
Strand=Plus/Plus
Query 86 aaGATGGTTTTGTCTAAGACAGCTTCGGAATCCGATG-TCTCAATCCATTCAACTTTTGC 144
||||||||||| |||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 71 AAGATGGTTTTATCTAAGACAGCTTCCAAATCCGATGAT-TCAATCCATTCAACTTTTGC 129
Query 145 TTCTCGTTACGTCCGGAACTCTCTTC-CACGATTCGAAATGCCTGAGAATTCAATCCCAA 203
||| ||||| ||||| |||||| || ||||||||||||| ||| |||| || ||||| |
Sbjct 130 TTCCCGTTATGTCCGCAACTCT-ATCTCACGATTCGAAATACCTAAGAACTCGATCCCTA 188
Query 204 AGGAAGCAGCGTACCAAATCATCAACGACGAGCT-AATGCTCGATGGTAACCCGAGGCTG 262
|||||||||| ||||||||||||||||||||||| || | | || ||||||||||||||
Sbjct 189 AGGAAGCAGCATACCAAATCATCAACGACGAGCTCAA-GTTTGACGGTAACCCGAGGCTA 247
Query 263 AACCTAGCCTCCTTTGTGACCACATGGATGGAGCCAGAGTGTGACAAGCTCATGATGGAG 322
||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 248 AACCTGGCCTCCTTTGTGACCACTTGGATGGAGCCAGAATGTGACAAGCTCATGATGGAA 307
Query 323 TCCATCAACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACTGAGCTTCAGAAC 382
||||||||||||||| |||| || |||||| | ||||| || ||||| || ||||||||
Sbjct 308 TCCATCAACAAGAACAACGTTGAGATGGACCAATACCCTGTTACCACCGACCTTCAGAAT 367
Query 383 CGATGTGTCAACATGATCGCGCGTCTCTTCAACGCGCCGCTT-GGTGATGGTGAAGCTGC 441
||||| || |||||||| |||||||||||||||||||| || ||||| |||||||| ||
Sbjct 368 CGATGCGTTAACATGATTGCGCGTCTCTTCAACGCGCC-TTTAGGTGACGGTGAAGCCGC 426
Query 442 CGTGGGTGTTGGCACCGTTGGATCGTCAGAGGCGA-TTATGTTGGCGGGTTTGG-CTTTC 499
| | ||||||||||| || || || || ||||| | | |||||||| || ||| ||||
Sbjct 427 CATTGGTGTTGGCACGGTGGGGTCATCGGAGGC-AGTGATGTTGGCCGGACTGGCCTTT- 484
Query 500 AAGAGACAGTGGCAGAATAAGCGTAAGGCCCAAGGGCTTCCTTATGATAAG-CCCAACAT 558
||||||||||||||||| ||||||||||||| |||||| ||||||||| || || || ||
Sbjct 485 AAGAGACAGTGGCAGAACAAGCGTAAGGCCCTAGGGCTGCCTTATGAT-AGACCTAATAT 543
Query 559 TGTAACCGGAGCCAATGTCCAGGTTTGCTGGGAGAAATTCGCAAGGTATTTCGAAGTGGA 618
|||||||||||||||| | |||||||||| ||||||||| ||||||||||| ||||||||
Sbjct 544 TGTAACCGGAGCCAATATTCAGGTTTGCTTGGAGAAATTTGCAAGGTATTTTGAAGTGGA 603
Query 619 GCTTAAGGAAGTGAATCTAAGAGAA-GATTATTACGTGATGGACCCTGTA-AAGGCGGTC 676
||||||||||||||| || |||||| || ||||||||||||||||||| | || |||||
Sbjct 604 GCTTAAGGAAGTGAAGCTGAGAGAAGGA-TATTACGTGATGGACCCTG-ACAAAGCGGTT 661
Query 677 GAAATGGTCGATGAGAACACAATCTGCGTCGCGGCCATCCTCGGTTCGACACTAACCGGT 736
|||||||| || || ||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 662 GAAATGGTAGACGAAAACACTATATGCGTCGTGGCCATCCTCGGTTCGACACTAACCGGA 721
Query 737 GAATTCGAAGATGTTAAGCTCCTCAACGACCTCCTT-GTCGAGAAAAATAAGCAAACCGG 795
||||||||||| |||||||||||||||||||| || ||||||||||| ||| |||||||
Sbjct 722 GAATTCGAAGACGTTAAGCTCCTCAACGACCT-TTTAGTCGAGAAAAACAAGAAAACCGG 780
Query 796 ATGGGACACGCCGATCCACGTTGACGCAGCAAGTGGTGGGTTTATTGCTCCCTTCTTGTA 855
|||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 781 ATGGGATACGCCGATTCACGTGGACGCAGCGAGTGGTGGGTTTATTGCTCCCTTCTTGTA 840
Query 856 CCCGGAGTTGGAATGGGATTTCCGGCTACCGTTGGTTAAGAGTATTAATGTGAGTGGTCA 915
||||| ||||| |||||||||||| |||||||||||||||| || ||||||||||||||
Sbjct 841 TCCGGACTTGGAGTGGGATTTCCGGTTACCGTTGGTTAAGAGCATAAATGTGAGTGGTCA 900
Query 916 CAAATACGGTTTGGTATACGCCGGTATCGGTTGGGTTGTATGGAGAACCAAAACCGATTT 975
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 CAAATACGGTTTGGTTTACGCCGGTATCGGTTGGGTCGTATGGAGAACCAAAACCGATTT 960
Query 976 GCCTGATGAACTTATTTTCCATATCAATTATCTTGGCGCTGATCAACCAACCTTCACACT 1035
||||||||||||||| |||||||||||||||||||| ||||||||||| || || || ||
Sbjct 961 GCCTGATGAACTTATCTTCCATATCAATTATCTTGGAGCTGATCAACCCACATTTACCCT 1020
Query 1036 TAACTTCTCCAAAGGTTCAAGTCAAGTGATTGCTCAGTACTACCAGCTGATTCGTCTTGG 1095
|||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 CAACTTCTCTAAAGGGTCAAGTCAAGTGATTGCTCAGTACTACCAGTTGATTCGTCTTGG 1080
Query 1096 ATTCGAGGGATATCGCAATGTGATGGATAATTGTCGGGAAAACATGATGGTGCTAAGACA 1155
|||||||||||||||||| |||||||||||||| || || ||||||||||| ||||||||
Sbjct 1081 ATTCGAGGGATATCGCAACGTGATGGATAATTGCCGCGAGAACATGATGGTACTAAGACA 1140
Query 1156 AGGATTAGAGAAAACGGGACGTTTTAACATTGTCTCTAAAGAAAATGGTGTTCCATTAGT 1215
|||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||
Sbjct 1141 AGGATTAGAGAAAACGGGACGTTTTAACATCGTCTCCAAAGAAAACGGTGTTCCGTTAGT 1200
Query 1216 GGCGTTTTCTCTCAAAGACAGTAGCCGCCACAACGAGTTCGAGGTAGCCGAAACGCTCCG 1275
|||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 1201 GGCGTTTTCTCTCAAAGATAGTAGCCGCCACAACGAGTTCGAGGTGGCCGAAATGCTTCG 1260
Query 1276 CCGCTTTGGCTGGATCGTTCCGGCCTACACGATGCCTGCGGATGCGCAACATGTCACTGT 1335
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1261 TCGCTTCGGCTGGATCGTTCCGGCCTACACGATGCCTGCGGATGCGCAACATGTCACGGT 1320
Query 1336 CCTACGAGTTGTTATCCGAGAAGATTTCTCTAGAACCTTAGCCGAGAGATTGGTAGCCGA 1395
||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1321 CCTTCGAGTTGTTATCCGAGAAGATTTCTCTCGAACCTTAGCTGAGAGATTGGTAGCCGA 1380
Query 1396 TTTCGAGAAGGTTCTACACGAGCTCGATACGCTTCCCGCGAGGATTCACGCCAAGATGGC 1455
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1381 TTTCGAGAAGGTTCTACACGAGCTCGATACGCTTCCCGCGAGGGTTCACGCCAAGATGGC 1440
Query 1456 TAATGGAAAAGTTAATGGCGTTAAGAAGACGCCAGAGGAGACGCAGAGAGAAGTCACGTC 1515
|| |||||||||||| || |||||||||||||||||||||||||| |||||||||||| |
Sbjct 1441 TAGTGGAAAAGTTAACGGTGTTAAGAAGACGCCAGAGGAGACGCAAAGAGAAGTCACGGC 1500
Query 1516 CTACTGGAAGAAGTT-GTTGGAGACTAAGA 1544
||||||||||||||| || ||| |||||||
Sbjct 1501 CTACTGGAAGAAGTTTGT-GGACACTAAGA 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87198346665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5