BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484128
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02050.1 | Symbols: | NADH-ubiquinone oxidoreductase B18 su... 911 0.0
> AT2G02050.1 | Symbols: | NADH-ubiquinone oxidoreductase B18
subunit, putative | chr2:489966-491995 FORWARD LENGTH=647
Length=647
Score = 911 bits (493), Expect = 0.0
Identities = 590/633 (93%), Gaps = 22/633 (3%)
Strand=Plus/Plus
Query 1 GAAGAAGAAGAAGAGAGTAATCG-T-TGAGGTTTGGGGATCGCGAAAATGGAGGTTCCAG 58
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 13 GAAGAAGAAGAAGAGAGT-ATCGTTGTGAGGTTTGGGGATCGCGAAAATGGAGGTTCCAG 71
Query 59 GTTCATCGAAGAAGATGATCGCAACGCAAGAAGAGATGTCTGCAGCTAAAATACCACTTG 118
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 72 GTTCATCGAAGAAGATGATCGCAACGCAAGAAGAGATGTCTGCAGCTAAAATAGCACTTG 131
Query 119 GTTCGAGAGATCA-GTGCGCTCATCTCTTGATTCCTCTCAACAAATGTCGTCAGGCTGAG 177
| || |||||| | ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 132 GATCTAGAGAT-ATGTGCGCTCATCTCTTGATTCCGCTCAACAAATGTCGTCAGGCTGAG 190
Query 178 TTTTTCCTTCCATGGAAATGTGAAGACGAGCGTCACGTTTACGAGAAGTGTGAATACGAG 237
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 191 TTTTACCTTCCATGGAAATGTGAAGACGAGCGTCACGTTTATGAGAAGTGTGAATACGAG 250
Query 238 CTTGTTATGGAGAGAATGCTTGCGATGAAGAAGATCCGTGAAGAAGAAGCTTTGGCTAAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 CTTGTTATGGAGAGAATGCTTGCGATGAAGAAGATCCGTGAAGAAGAAGCTTTGGCTAAA 310
Query 298 CAGAATAAACTACAAGGGAACGCCGCTGTTCCTCTTATCCCTAAAACTGCTAATGCTTAG 357
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 311 CAGAATAAACTACAAGGAAACGCTGCTGTTCCTCTTATCCCTAAAACTGCTAATGCTTAG 370
Query 358 CCTCCTCCGATTCGATTCCTTCTCCGATTTGCCGATTCCAGATTCCGGGATTCTCTGGAA 417
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 371 --------GATTCGATTCCTTCTCCAATTTGCCGATTCCAGATTCCGGGATTCTCTGGAA 422
Query 418 CTGTGAAGAAGGTGGGGGCTCTGCTTTTCAATATTTTTCTTCTTGCTAGTGATGAAAAAT 477
||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 423 CTGTGAAGATGGTGGGGACTCTGCTTTTCAATCTTTTTCTTCTTGCTAGTGATGAAAAAT 482
Query 478 TGTTGCTACATTTTCAGATGTGAATGTTCAAGATTCTCTATCTTTTTGTTTTT----A-C 532
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 483 TGTTGCTACATTTTCAGATGTGAATGTTCAAGATTCTCTATCTTTTTTTTTTTTTTGAAC 542
Query 533 TCTTGTTAACTTGGAAGTG-TTTCCCaaaaaaaTAAGATGCAAA-CTAATATTTTTCTTA 590
|||| |||||||||| ||| |||||||||||| ||||||||||| || || ||||| ||
Sbjct 543 TCTTTTTAACTTGGA-GTGGTTTCCCAAAAAA-TAAGATGCAAAACTCATCTTTTTGTTG 600
Query 591 GTTTTCTATCTTTAATATTTGAGAAAGAAAAAA 623
|||||||||||||||| | ||||||| ||||||
Sbjct 601 GTTTTCTATCTTTAATCTGTGAGAAATAAAAAA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040019906
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5