BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484129
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02060.1 | Symbols: | Homeodomain-like superfamily protein ... 1232 0.0
AT1G14600.1 | Symbols: | Homeodomain-like superfamily protein ... 320 1e-86
> AT2G02060.1 | Symbols: | Homeodomain-like superfamily protein
| chr2:495570-497747 FORWARD LENGTH=1030
Length=1030
Score = 1232 bits (667), Expect = 0.0
Identities = 896/995 (90%), Gaps = 62/995 (6%)
Strand=Plus/Plus
Query 1 TCTTGGGTCTT-AGTAAAAATCGAATC-TTGTGTCGGTCTTTAGGGTTCTTGAAACG--A 56
|||||||| || ||||||||||||||| |||||||||| |||||||||||||||||| |
Sbjct 64 TCTTGGGT-TTAAGTAAAAATCGAATCTTTGTGTCGGTTTTTAGGGTTCTTGAAACGATA 122
Query 57 TGGGTAAGTGTGGTGGGAGAAATGGTAACGGAAGCTTTAACGGCAGTGGGTTTCACGGTC 116
||||||||| | |||| |||||||||||||||||||||||||||| | || ||
Sbjct 123 TGGGTAAGTCTAGTGGTAGAAATGGTAACGGAAGCTTTAACGGCAAT-AAATT-----TC 176
Query 117 ACGGTGGCGGCAGAGTTAGGCCTTACGTACGGTCTCCGGTTCCACGACTTAGATGGACGC 176
| | | ||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 177 A------C-G--GAGTTAGACCTTACGTACGGTCTCCAGTTCCACGGCTTAGATGGACGC 227
Query 177 CGGATCTTCACCGTTGTTTCGTTCACGCCGTCGAGATTCTCGGTGGTCAACACCGAGCAA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 CGGATCTTCACCGTTGTTTCGTTCACGCCGTCGAGATTCTCGGTGGTCAACACCGAGCAA 287
Query 237 CACCAAAACTTGTTCTTAAGATGATGGATGTGAAGGGACTCACCATTTCACATGTCAAAA 296
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 288 CACCAAAACTTGTTCTTAAGATGATGGATGTGAAGGGACTTACCATTTCACATGTCAAAA 347
Query 297 GCCATCTTCAGATGTATAGAGGA---TCAAAGCTCACTTTGGGGAAACCAGAAGAAAGCT 353
|||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 348 GCCACCTTCAGATGTATAGAGGAGGTTCAAAGCTCACTTTGGAGAAACCAGAAGAAAGCT 407
Query 354 CATCATCTTCAATAAGAAGAAGACAAGACAGTGAAGAAGATAATAATCTTCATGACAACT 413
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 408 CATCATCTTCAATAAGAAGAAGACAAGACAGTGAAGAAGATTATTATCTTCATGACAACT 467
Query 414 TGTCTTTACACACAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTTCCTCTTTCTTCAC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TGTCTTTACACACAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTTCCTCTTTCTTCAC 527
Query 474 ATTCTTCATTTAGGGGAGGAGGA--AG-AAGAA-AAGAGCAGCAGCAGACTTCAGAGTCT 529
||||||||||||| ||||||||| || ||||| || || ||||||||||||||||||||
Sbjct 528 ATTCTTCATTTAGAGGAGGAGGAGGAGGAAGAACAAAAG-AGCAGCAGACTTCAGAGTCT 586
Query 530 GGT--T-ATGATGATGATGATGACTTTCTTCACATCATGAACATGAAGAAGACGAAAGAT 586
||| | |||||||||||| ||||||||||||||||| ||| ||||| ||| |
Sbjct 587 GGTGGTTATGATGATGATGCTGACTTTCTTCACATCAAGAAGATGAA-----CGA----T 637
Query 587 ACGACGACGTTTCTATCACATCATTTCCCCAAGGGAACAGAGGAGTGGCGGGAACAAGAA 646
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 ACGACGACGTTTTTGTCACATCATTTCCCCAAGGGAACAGAGGAGTGGCGGGAACAAGAA 697
Query 647 CACgaagaagaagaagaagaTTTGTCGTTGTCTCTGTCGCTAAATCATCATCATTGGAGA 706
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 698 CACGAAGAAGAAGAAGAAGATTTGTCGTTGTCTCTGTCGTTAAATCATCATCATTGGAGA 757
Query 707 AGCAATGGATCATCGGTG---AGCGAAACGAGTGAAGCAGCAGTCTCAACATGTTCAGCA 763
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 758 AGCAATGGATCATCGGTGGTGAGCGAAACGAGTGAAGCAGCAGTCTCGACTTGTTCAGCA 817
Query 764 CCATTCGTCTCCAAAGATTGCTTTGGTTCTTCAAAGATTGATCTTAATCTTAATCTCTCA 823
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 818 CCATTCGTATCCAAAGATTGCTTTGGTTCTTCAAAGATTGATCTTAATCTG--TC----A 871
Query 824 ATTTCTCTCCTCGGTAGCTAAATAAGTAA-GCCAAGATT-AGGTTCAGTGAAACAATATT 881
||||||||||||||||||||||||||| | || |||||| |||||||| ||||| ||||
Sbjct 872 ATTTCTCTCCTCGGTAGCTAAATAAGTTATGC-AAGATTTAGGTTCAGAGAAAC--TATT 928
Query 882 CGGATGTATTTT-GAAACTAGGATTTT-A-TGTTTTCAG-AGAGAAATCTTGAAAATAAA 937
||||||| |||| ||||||||||| || | |||| || ||||||| || |||||| ||
Sbjct 929 CGGATGTGTTTTTGAAACTAGGATATTGAATGTT---AGTAGAGAAACCTAGAAAATGAA 985
Query 938 GTTTAGATCAATATATAAACGCAGCGTTTTGATCG 972
|||||||| ||| ||| ||||||||||||||||||
Sbjct 986 GTTTAGATAAAT-TATCAACGCAGCGTTTTGATCG 1019
> AT1G14600.1 | Symbols: | Homeodomain-like superfamily protein
| chr1:5001011-5003370 REVERSE LENGTH=942
Length=942
Score = 320 bits (173), Expect = 1e-86
Identities = 288/342 (84%), Gaps = 14/342 (4%)
Strand=Plus/Plus
Query 129 GAGTTAGGCCTTACGTACGGTCTCCGGTTCCACGACTTAGATGGACGCCGGATCTTCACC 188
|||| || || |||||||| |||||||| || || || |||||||||||||| |||||||
Sbjct 41 GAGTAAGACCATACGTACGATCTCCGGTGCCTCGTCTGAGATGGACGCCGGAGCTTCACC 100
Query 189 GTTGTTTCGTTCACGCCGTCGAGATT-CTCGGTGGTCAACACCGAGCAACACCAAAACTT 247
| |||||||||||||||| || || ||||| |||||| | |||||| |||||||||
Sbjct 101 GGAGTTTCGTTCACGCCGTTGA-TTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTT 159
Query 248 GTTCTTAAGATGATGGATGTGAAGGGACTCACCATTTCACATGTCAAAAGCCATCTTCAG 307
||||| ||||| |||||||| |||||||| ||||| ||||| ||||| |||||||| |||
Sbjct 160 GTTCTGAAGATAATGGATGTCAAGGGACTAACCATATCACACGTCAAGAGCCATCTCCAG 219
Query 308 ATGTATAGAGGAT-CA-AAGCTCACTT-TGGGGAAACCAGAAGAAAG--C-TCATCATCT 361
|||||||| |||| || || | | ||| | || ||||||||||| || | ||| |||||
Sbjct 220 ATGTATAGGGGATCCAGAATCACTCTTCTTGGAAAACCAGAAGAGAGTTCTTCACCATCT 279
Query 362 TC---AATAAGAAGAAGACAAGACAGTGAAGAAGATAATAATCTTCATGACAACTTGTCT 418
|| || ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 280 TCAAGAAGAAGAAGAAGACAAGACAATGAAGAAG---ATCATCTTCATGACAACTTGTCT 336
Query 419 TTACACACAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTT 460
||||| |||||||||||||||||||||||||||||||||||
Sbjct 337 GTACACGCAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTT 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5