BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484134
Length=2576
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-contain... 4041 0.0
> AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein | chr2:523284-527012
FORWARD LENGTH=2617
Length=2617
Score = 4041 bits (2188), Expect = 0.0
Identities = 2483/2616 (95%), Gaps = 58/2616 (2%)
Strand=Plus/Plus
Query 1 AACCTTTCTTTGAAATCTTTGACCTTTCCCTTCCTTCTCCTCCGCGAAATTCGTTTTAA- 59
||||||||||||||||| |||||||||||||||| | | |||||| |||||||||||||
Sbjct 1 AACCTTTCTTTGAAATC-TTGACCTTTCCCTTCC-T-T-CTCCGCTAAATTCGTTTTAAT 56
Query 60 TT--TCTTCTTCGTCTTCTTCAATTCGATGC------A---A--T-AA--TCAATCTAGG 103
|| |||||||| |||||||||||||||||| | | | || ||||||||||
Sbjct 57 TTCATCTTCTTCTTCTTCTTCAATTCGATGCAATAATAGTCACTTCAATCTCAATCTAGG 116
Query 104 GTTTTCAA-TTTCTTCATGTG-Atttttttt--tCTTCTTCTCAATTTCAATTTTCAATC 159
|||||||| |||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 117 GTTTTCAATTTTCTTCATGTGAATTTTTTTTCCCCTTCTTCTCAATTTCAA--TTCAATC 174
Query 160 TGGGATTCG--GA------GAAGATGAAACGCGATTTCGACGAAATCTCCGAGGAAGAGT 211
||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TGGGATTCGTAAATTCTCGGAAGATGAAACGCGATTTCGACGAAATCTCCGAGGAAGAGT 234
Query 212 GGTCTCAACACTCTTTTAACGCTTCGCGAGTTCTTAAACGGCCACGGACTCCGAAGAAGA 271
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 235 GGTCTCAACACTCGTTTAACGCTTCGCGAGTTCTTAAACGACCACGGACTCCGAAGAAGA 294
Query 272 CTCG-GC--CGGTGAATCCAACGCC-TCCGATTGAGTCTTTTGCGTTTAGGAGACCTTCG 327
|||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 295 CTCGCGCGGCGACGAATCCAACGCCGT-CGATTGAGTCTTTTGCGTTTAGGAGACCTTCG 353
Query 328 ACGGCGATGGCGATTGAGAGTAGTAATAGTAGCGATGGTGATTGTGTTGAGATTGAGGAT 387
||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 354 ACGGCGATGACGATT--GAG-AGTAATAGCAGCGATGGTGATTGTGTTGAGATTGAGGAT 410
Query 388 TTAGGAGATTCGGATTCGGATGTGAAGATTGTGAATGGTGAGGATTTGTTGTTGGAGGAT 447
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 411 TTGGGAGATTCGGATTCGGATGTGAAGATTGTGAATGGTGAGGATTTGTTGTTAGAGGAT 470
Query 448 GAGGAAGAAGTTGAGGAGACCAAGGTTGTGATGCGAGCTGCGAGAGTTGGTAGGAGATTT 507
|| |||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 471 GAAGAAGAAGTGGAAGAGACTAAGGTTGTGATGCGCGCTGCGAGAGTTGGTAGGAGATTT 530
Query 508 GTGATTGAAGATGAAGAAGCGA--G-TGATGATGATGATGAGGCTGAGAGTAGTGCTAGT 564
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 531 GTGATTGAAGATGAAGAAGCGAGTGATGATGATGATGATGAGGCTGAGAGTAGTGCTAGT 590
Query 565 GAGGACGAATTTggaagaggaggaggaggtggtggaggaaggagaggagAAGATGAAGAT 624
||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 591 GAGGATGAATTTGGAGGAGGAGGAGGAGGAAGTGGAGGAAGGAGAGGAGAAGATGAAGAT 650
Query 625 GTTGTTGGGAAGGCATTGCAAAAGTGTGCTAAAATCTCAGCCGATCTTCGAAAGGAGCTT 684
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 651 GTTGTGGGGAAGGCATTGCAAAAGTGTGCTAAAATCTCAGCGGATCTTCGAAAAGAGCTT 710
Query 685 TATGGTACATCTTCTGGGGTTACTACTTGTGAGAGATACTCTGAAGTTGAAACTTCTACT 744
|||||||| |||||||| | | ||| ||| |||||||||||||||||||||||||||
Sbjct 711 TATGGTACTTCTTCTGGTG-T--TAC---TGATAGATACTCTGAAGTTGAAACTTCTACT 764
Query 745 GTGAGGATTGTCACACAGAATGATATAGATGATGCCTGTAAAGGAGAGGATTCTGATTTT 804
|| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 765 GTCAGGATTGTCACACAGAATGATATTGATGATGCATGTAAAGCAGAGGATTCTGATTTT 824
Query 805 CAGCCTATACTCAAGCCTTACCAGTTAGTTGGTGTTAACTTTCTTCTTTTGTTGTATAAG 864
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 825 CAGCCTATACTCAAGCCGTACCAGTTAGTTGGTGTTAACTTTCTTCTTCTGTTGTATAAG 884
Query 865 AAAGGAATTGAAGGAGCCATTCTAGCTGATGAGATGGGTCTTGGAAAGACCATTCAGGCA 924
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 885 AAAGGAATTGAAGGAGCCATTTTAGCCGATGAGATGGGTCTTGGAAAGACCATTCAGGCA 944
Query 925 ATCACATATTTAACCCTCCTAAATCGCTTAAACAATGACCCTGGTCCTCATTTGGTTGTA 984
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 945 ATCACATATTTAACCCTCCTAAGTCGCTTAAACAATGACCCTGGTCCTCATTTGGTTGTA 1004
Query 985 TGCCCTGCCTCTGTCTTGGAAAATTGGGAGAGAGAGCTCAGAAAATGGTGTCCATCGTTT 1044
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1005 TGCCCTGCCTCTGTCTTGGAAAACTGGGAGAGAGAGCTCAGAAAATGGTGTCCGTCGTTT 1064
Query 1045 ACTGTACTTCAATACCACGGGGCTGCGAGAGCAGCATACTCAAGAGAATTGAATTCTTTG 1104
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1065 ACTGTACTTCAATACCACGGAGCTGCGAGAGCAGCCTACTCAAGAGAATTGAATTCTTTG 1124
Query 1105 TCAAAAGCTGGGAAGCCACCGCCATTCAATGTGCTTCTTGTGTGTTACTCTCTGTTTGAA 1164
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TCAAAAGCTGGGAAGCCACCACCATTCAATGTGCTTCTTGTGTGTTACTCTCTGTTTGAA 1184
Query 1165 CGGCATAGTGAACAACAGAAAGATGACCGAAAAGTACTAAAACGATGGCGCTGGAGCTGT 1224
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1185 CGGCATAGTGAACAACAGAAAGATGACCGAAAAGTACTGAAACGGTGGCGCTGGAGCTGT 1244
Query 1225 GTTTTGATGGATGAAGCCCATGCTTTAAAAGATAAGAACAGTTACAGGTGGAAAAATTTG 1284
||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| |||
Sbjct 1245 GTTTTGATGGATGAAGCCCATGCGTTAAAGGATAAGAATAGTTATAGGTGGAAAAACTTG 1304
Query 1285 ATGTCTGTGGCCAGAAACGCAAACCAGCGTCTTATGCTTACAGGAACGCCTCTACAAAAT 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 ATGTCTGTGGCCAGAAACGCAAACCAGCGTCTTATGCTTACAGGAACGCCTCTACAAAAT 1364
Query 1345 GATTTACATGAATTATGGTCGCTGTTGGAGTTCATGTTGCCTGATATATTTACTACAGAG 1404
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1365 GATTTGCATGAACTATGGTCGCTGTTGGAGTTCATGTTGCCTGATATATTTACGACAGAG 1424
Query 1405 AATGTTGACTTGAAGAAGTTGTTGAATGCAGAAGATACTGAGTTGATTACTCGAATGAAA 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 AATGTTGACTTGAAGAAGTTGTTGAATGCAGAAGATACTGAGTTGATTACTCGAATGAAA 1484
Query 1465 TCTATTTTAGGTCCTTTCATCTTGAGGCGTTTAAAATCTGATGTCATGCAGCAACTTGTT 1524
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TCTATCTTAGGTCCTTTCATCTTGAGGCGTTTAAAATCTGATGTCATGCAGCAACTTGTT 1544
Query 1525 CCGAAGATACAGCGGGTTGAATATGTATTAATGGAGAAAAAGCAGGAAGATGCATATAAA 1584
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1545 CCGAAGATACAGCGGGTTGAATATGTATTAATGGAGAGAAAGCAGGAAGATGCATATAAA 1604
Query 1585 GAAGCCATAGAGGAGTATCGTGCTGCTTCTCAAGCACGGCTTTTGAAGCTTTCATCAAAA 1644
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1605 GAAGCCATAGAGGAGTATCGTGCTGCTTCTCAAGCACGGCTTGTGAAGCTTTCATCAAAA 1664
Query 1645 TCCTTGAATTCTTTAGCCAAGGCACTTCCAAAGCGTCAAATTTCAAACTATTTTACTCAA 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 TCCTTGAATTCTTTAGCCAAGGCACTTCCAAAGCGTCAAATTTCAAACTATTTTACTCAA 1724
Query 1705 TTTCGGAAGATTGCAAATCATCCATTGTTAATTAGGCGGATATACAGCGATGAGGATGTC 1764
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 TTCCGGAAGATTGCAAACCATCCATTGTTAATTAGGCGGATATACAGCGATGAGGATGTC 1784
Query 1765 ATTCGCATCGCCAGGAAATTGCACCCAATCGGTGCATTTGGATTCGAATGTTCCTTGGAG 1824
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1785 ATTCGCATCGCCAGGAAATTGCACCCAATCGGTGCATTTGGATTTGAATGTTCCTTGGAT 1844
Query 1825 AGAGTTATCGAGGAAGTTAAGGGTTACAACGATTTCCGTATCCACCAGCTTTTGTTCCAA 1884
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1845 AGAGTTATCGAGGAAGTTAAGGGTTTCAACGATTTCCGTATCCACCAGCTTTTGTTCCAA 1904
Query 1885 TTTGGAGTTAATGATACCAAAGGAACTCTCTCTGACAAACATGTCATGCTCTCAGCAAAA 1944
| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1905 TATGGAGTTAACGATACCAAAGGAACTCTCTCAGACAAACATGTCATGCTCTCAGCAAAA 1964
Query 1945 TGTCGGACATTAGCTGAGCTTCTCCCTTCAATGAAGAAATCCGGCCATCGTGTTCTAATA 2004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 TGTCGGACATTAGCTGAGCTTCTCCCTTCAATGAAGAAATCCGGCCATCGTGTTCTAATA 2024
Query 2005 TTTAGTCAATGGACATCGATGCTCGATATCTTAGAATGGACACTCGATGTAATCGGCGTT 2064
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2025 TTTAGTCAATGGACATCGATGCTCGATATCTTAGAATGGACACTTGATGTCATCGGCGTT 2084
Query 2065 ACATACCGAAGACTTGACGGCAGTACTCAAGTCACAGATAGACAAACCATAGTCGACACA 2124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2085 ACATACCGAAGACTTGACGGCAGTACTCAAGTTACAGATAGACAAACCATAGTCGACACA 2144
Query 2125 TTCAACAACGATAAGTCGATATTCGCATGTCTCTTGTCAACTCGAGCAGGTGGACAAGGT 2184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 TTCAACAACGATAAGTCGATATTCGCATGTCTCTTGTCAACTCGAGCAGGTGGACAAGGT 2204
Query 2185 CTGAATTTAACCGGAGCAGATACGGTCATTATTCACGATATGGATTTTAATCCACAGATT 2244
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2205 CTTAATTTAACCGGAGCGGATACAGTCATTATTCACGATATGGATTTTAATCCACAGATT 2264
Query 2245 GATCGGCAAGCTGAAGATCGTTGCCATCGTATTGGTCAAACAAAACCAGTCACTATCTTC 2304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2265 GATCGGCAAGCTGAAGATCGTTGCCATCGTATTGGTCAAACAAAACCAGTCACTATCTTC 2324
Query 2305 AGACTGGTGACAAAATCGACGGTTGATGAGAACATCTACGAGATAGCAAAGCGGAAACTT 2364
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2325 AGACTGGTGACGAAATCGACGGTTGATGAGAACATCTACGAGATAGCGAAGCGGAAACTA 2384
Query 2365 GTTCTTGATGCGGCGGTTCTAGAGTCTGGAGTTCACGTAGATGACAACGGAGACACGCCT 2424
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2385 GTTCTTGATGCGGCGGTTCTAGAGTCCGGAGTTCACGTAGATGACAACGGAGACACGCCT 2444
Query 2425 GAGAAAACCATGGGAGAGATTCTCGCTTCTCTTCTCATGGGATAACATTATTGTTACCtt 2484
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2445 GAGAAAACCATGGGAGAGATTCTTGCTTCTCTTCTCATGGGATAACATTATTGTTACCTT 2504
Query 2485 tttttGTTTTGAGGTAAAATTAGTCAAGAAACGAAGTTAAATGTGTTATTCGAAACATGT 2544
|||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 2505 TTTT-GTTTTGAGGTAAAATTAGTCAAGAAACGAAGTTAA-TGTGTTATTCTAAACATGT 2562
Query 2545 CTAAC-ACTAGCTATTA---GACTTAAATTTAATAG 2576
|||| ||||||||||| ||||||||||||||||
Sbjct 2563 GTAACCACTAGCTATTATTAGACTTAAATTTAATAG 2598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127875537707
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5