BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484140 Length=2464 Score E Sequences producing significant alignments: (Bits) Value AT2G02160.1 | Symbols: | CCCH-type zinc finger family protein ... 3367 0.0 > AT2G02160.1 | Symbols: | CCCH-type zinc finger family protein | chr2:553110-556113 REVERSE LENGTH=2521 Length=2521 Score = 3367 bits (1823), Expect = 0.0 Identities = 2292/2505 (91%), Gaps = 86/2505 (3%) Strand=Plus/Plus Query 2 aaaaaaaaaaaCTTTTAGGCTTAGCTTTAAAGGGcacacacacacaATCGCGAGTTTCTC 61 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 7 AAAAAAAAAAACTTTTAGGCTTAGCTTTAAAGGGCACACACACACAGTCGCGAGTTTCTC 66 Query 62 TCTGGTTCGCTCTTTGTGGCGGCTCGTCTTCTTCTTCTTTTTCCACGGGACTCTCTCTTG 121 |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 67 TCTGGTGCGCTCTTTGTGGCGGCTCGTCTTCTTCTTCTTCTTCCACGGGACTCTCTC-TG 125 Query 122 -ATCGGTGATTATCGATCTTTCTAGGGTTTCGATCTGAAACCTTGCGATCTACTTGAAAG 180 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 126 AATCGGTGATTTTCGATCTTCCTAGGGTTTCGATCTGAAACCTTGCGATCTACTTGAAAG 185 Query 181 ATAGATTTAGAAATTTCCAAGTAATAATAATGTTTGCGCCTGCGACTCAACCGCAACAGC 240 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 AGAGATTCAGAAATTTCCAAGTAATAATAATGTTTGCGCCTGCGACTCAACCGCAACAGC 245 Query 241 AGCA-GCAGGAGAAGAAGCAATCGGAGACTGTTTCATCTGCTGAAGAAGATGCTTTGAAG 299 | || | || ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 246 AACATG-AGCAGAAGAAGCAATCAGAGACTGTTTCATCTGCTGAAGAAGATGCTTTGAAG 304 Query 300 TGGAACACCGATTGCGTTTACTTTCTCGCTTCTCCTTTAACCTGCAAGAAGGGACCTGAG 359 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 TGGAACACCGATTGCGTTTACTTTCTCGCTTCTCCTTTAACCTGCAAGAAGGGACCTGAA 364 Query 360 TGTGAGTATCGCCACAGTGAGTATGCGCGTATGAACCCAAGGGATTGCTATTATTGGTTG 419 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 365 TGCGAGTATCGCCACAGTGAGTATGCGCGTATGAACCCGAGGGATTGCTATTATTGGTTG 424 Query 420 AATGGAAATTGTATGAATCCCAAATGTGGCTTTCGGCATCCTCCTTTGGAGGGATTGTTG 479 |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 425 AATGGAAACTGTTTGAATCCCAAATGTGGATTTCGGCATCCTCCTTTGGAGGGATTGTTG 484 Query 480 GGAAATCAAGGAGGTGCTCCTGCTGGTTCTGTACAGCCAACT-CATGCAACTGCGCAGCA 538 ||||||||||||||||||||||||| |||||||||||||| | |||||||| |||||||| Sbjct 485 GGAAATCAAGGAGGTGCTCCTGCTGTTTCTGTACAGCCAA-TACATGCAACCGCGCAGCA 543 Query 539 TTCCG-GTGTTGCAAAACAGCCGGTTCCGTGTGTGTTCTTTCAAAAAGGCATGTGTATGA 597 | || |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 544 T-CCTAGTGTTGCAAAACAGCCTGTTCCATGTCTGTTCTTTCAAAAAGGCATGTGTATGA 602 Query 598 AAGGAGATATGTGTTCATTCTTGCACACACCGAATCCTGCTGCTTATAAAAAACTGCTTT 657 |||||||||||||||| ||||||||||| |||||||||||||| |||||||||| || | Sbjct 603 AAGGAGATATGTGTTCGTTCTTGCACACGCCGAATCCTGCTGCGTATAAAAAACAGCAT- 661 Query 658 CC-GTAGAAGCTAAGCCTGCTGCTGATCCTCAGTTTTCTAAAAAGCCAATTGAAAATAAC 716 || |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 662 CCTGTAGAAGCTAAGCCTGCTACTGATCCTCAGTGTTCTAAAAAGCCAATTGAAAATAAC 721 Query 717 ACCGGGGAGAAGAAATTTGCTGATGCTAATCTCTCAAAGGCGGTTAAAGCACATGTTGAC 776 || | |||||||||| || |||||| |||||||||||||| |||||||| |||| |||| Sbjct 722 ACTGAGGAGAAGAAACTTCCTGATGTTAATCTCTCAAAGGTGGTTAAAGGACATACTGAC 781 Query 777 ATATCGGCTGCGCCAAGAGTCACATCTGCTGGCCTAAGGGATAGTAGACGCGTAGAGGGA 836 ||||||||||| ||||||||| | ||| |||| ||||||||||||||| | ||||||||| Sbjct 782 ATATCGGCTGCACCAAGAGTCGCTTCTACTGGACTAAGGGATAGTAGAAGTGTAGAGGGA 841 Query 837 TATGTTCCAGAAC-ATATGGGATATGACCCTGTTGTACAGAAAAAGGTTACGGGAGTTCC 895 || ||||| ||| || |||||||||| |||||||| |||| ||||| | | ||| |||| Sbjct 842 TACATTCCA-AACCATGTGGGATATGAGCCTGTTGTGCAGAGAAAGGGTCCAGGA-TTCC 899 Query 896 -TTCCTTTACTGAAGGAGGCCATTCGACTCAGTTGCTTCATAAATATGGATCTGATGATA 954 ||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 900 CTTCTTTTACTGAAGGAGGCCATTCTACTCAGTTGCTTCAGAAATATGGATCTGATGATA 959 Query 955 ATAACAGTTTCCACAATGGTAAGGACGCAGATGACGTTTTAAGAGAGTCGTCTCCTGGGT 1014 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 960 ATAACAGTTTCCACAATGGTAAGGATGCAGATGACGTTTTAAGAGAGTCGTCTCCTGGGT 1019 Query 1015 TTGATGTTCTTGTGGATAATGAGGCTAGG-GATTCAGAGTATTATCGTGTTGAAGATCGA 1073 |||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||| Sbjct 1020 TTGATGTTCTTGTGGATAATGAGGCT-GGAGATTCTGAGTATTATCATGTTGAAGATCGA 1078 Query 1074 TATGGACGGAGAAGTCAGGAGGGAGGGAACTCTGTGAATGAATATGACCCTGATTTCAGT 1133 |||||||| |||||||||||| |||||||||| | | | |||||||||||||||||| Sbjct 1079 TATGGACGTAGAAGTCAGGAGAGAGGGAACTCAG--A--G--TATGACCCTGATTTCAGT 1132 Query 1134 GCAATAGCTGATGATGA-A--GAAGCATTCCATGATCAGCGTTTTGATCCATATGATCAG 1190 ||||| ||||||| ||| | |||||||| | ||| || ||||||||| ||||||||| | Sbjct 1133 GCAATTGCTGATGGTGATAAAGAAGCATTACGTGAACAACGTTTTGATTCATATGATCGG 1192 Query 1191 AGGGAAGACAGGTATGCATGGGGCAACCGTCGAGTTTCTTCTGAGAGAGGAG-ATCATTC 1249 |||||||||||| | ||||||| | |||||||||||||||||||||| || ||| || Sbjct 1193 AGGGAAGACAGGG--G-ATGGGGCCATCGTCGAGTTTCTTCTGAGAGAG-AGGATCGTTT 1248 Query 1250 AGAAAGAAGGGTTTACGCAGAAGATGAGAGATCAGAGAACATATTGGCATCAGATCTGAG 1309 || ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| Sbjct 1249 GGACAGAAGGGTTTACGCAGAAGATGAGAGATCAGAGAACATACTGGAATCGGATCTGAG 1308 Query 1310 ATATCGTTTGGCTAAGCAGAGGAAAGTCAATGGTGTGAGAT---CAGTTGGAAGCCATGA 1366 ||||||||||||||||||||| |||| ||||||| |||||| |||| ||| ||||||| Sbjct 1309 ATATCGTTTGGCTAAGCAGAGAAAAGGCAATGGTATGAGATTATCAGTAGGAGGCCATGA 1368 Query 1367 CTATGGTGCTCCTGACTCTTC-AGTGGAAAGAGGATATAGAGACTCTCGTAGGGATACAC 1425 ||||| ||||||||||||||| | |||| |||||||||||||| |||||||||||||||| Sbjct 1369 CTATGCTGCTCCTGACTCTTCGA-TGGACAGAGGATATAGAGAGTCTCGTAGGGATACAC 1427 Query 1426 TGAGGGAAAACTCCATTAGCAGCAGCCGTCTACAGGGTAGAATTAAGCTTTGTGAGAGAA 1485 ||||||||||||||||||||| || ||||| |||||||||||||||||| ||||||||| Sbjct 1428 CGAGGGAAAACTCCATTAGCAGTAGTCGTCTTCAGGGTAGAATTAAGCTTCGTGAGAGAA 1487 Query 1486 GCAATGGCGACGAGGGTCACCACTTTGACAGAAGAAGTGAGAGGGGAAGGGACAGAAGCG 1545 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1488 GCAATGGCGAAGAGGGTCACCACTTTGACAGGAGAAGTGAGAGGGGAAGGGACAGAAGCG 1547 Query 1546 AGTTATCTTCTCAGGGTAGACTCCGAGATAGAATTAAGGGTAGGTTAGAGGAAAACCATA 1605 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1548 AGTTACCTTCTCAGGGTAGACTCCGAGATAGAATTAAGGGTAGGTTAGAGGAAAACCATA 1607 Query 1606 GTGGTAATCAGGAAAGAGGTTTCCGGGCTCCATGGGCGagaagaagagaaatggaagaag 1665 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1608 GTGGTAATCAGGAAAGAGGTTTCGGGGCTCCATGGGCGAGAAGAAGAGAAATGGAAGACG 1667 Query 1666 aaagaaaaCCAGCTCCTAAAAGCATTGCAGAAACTAAAAGCACCAGAGAGGAAAGTAAGC 1725 |||||||| ||||||||||||||| ||||| | | | || || |||||| Sbjct 1668 AAAGAAAATCAGCTCCTAAAAGCA--GCAGA--------G-A---G-GA--AA-GTAAGC 1709 Query 1726 CAGAGCCATCTCTTGGGAAGAGGAAAAGCTTTGAAGAGGATCATCATAGTCATAAGCGAT 1785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1710 CAGAGCCATCTCTTGGGAAGAGGAAAAGCTTTGAAGAGGATCATCATAGTCATAAGCGAT 1769 Query 1786 CA-GGAGATTCATTTGCAGCTCCTTTGCCTTTCAGTGAGATTCTGAAGAGAAAAAGAGCG 1844 || || ||||||||||||||||| |||||||||||||||||||| |||||||||| |||| Sbjct 1770 CAAGG-GATTCATTTGCAGCTCCATTGCCTTTCAGTGAGATTCTCAAGAGAAAAAAAGCG 1828 Query 1845 GCTGCATCTGGTGGTAGCAGACACAACAACAAGGACGAGACGATAACGAAAGAGGAAGCT 1904 || |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1829 GCCGCATCTGGTGGTAGCAGAAACAACAACAAGGACGAGACGATATCGAAAGAGGAAGCT 1888 Query 1905 GGAGATGAGACCAAACTCATAACAGAAGAGAAAACCGAGGTTGTCTCGGAACCCAAAGCT 1964 |||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1889 GGAGATGAGATCAAACTCATAACCGAAGAGAAAACCGAGGTTGTCTCTGAACCCAAAGCT 1948 Query 1965 GAAGTAGAAGAAGAAGGAACGATTATGGAGGAAGAAGAAGTTGTTGGGGAGGAAGTGTAT 2024 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 1949 GAAGTAGAAGAAGAAGGAACGGTTATGGAGGAAGAAGAAATTGTTGGGGAGGAAGTGTAT 2008 Query 2025 GAAGGAAATGAAGATGAGCAAGCTTATGAAGGCGATGAGCTAAACGGAGAGTACTATTAC 2084 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2009 GAAGGAAATGAAGACGAGCAAGCTTATGAAGGCGATGAGCTAAACGGAGAGTACTATTAC 2068 Query 2085 GAAGAAGGATATGAAGAAGAGGGAGGAGAATACGCTTACGAAGAAGGTGAAGAAGTAGTT 2144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2069 GAAGAAGGATATGAAGAAGAGGGAGGAGAATACGCTTACGAAGAAGGTGAAGAAGTAGTT 2128 Query 2145 TATGCGGCtgaggaaggagaagaagaagtgacagaaggaggtgaagctgagggtgaagaa 2204 || ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 2129 TACGCGGCTGAGGAAGGAGAAGAAGAAGCAACAGAAGGAGGTGAAGGTGAGGGTGAAGAA 2188 Query 2205 gacattgagaagaagaCTGTTGAGATGTTGTCATAAAAGaa-aaa-a--a-----G---- 2251 ||||||||||||||||| ||||||||||||||||||||||| ||| | | | Sbjct 2189 GACATTGAGAAGAAGACCGTTGAGATGTTGTCATAAAAGAAGAAAGAGTAACACAGAAAA 2248 Query 2252 ---CTTTTACTCCTTTCCTCTGA-TCTCTCT----GCTTAATGCAAATGG-GAGA-GAAG 2301 ||||| |||||||||||| ||||||| ||||||||||||||| |||| |||| Sbjct 2249 AAGCTTTTGCTCCTTTCCTCTCTCTCTCTCTCTCTGCTTAATGCAAATGGAGAGAAGAAG 2308 Query 2302 TCGTTGAGCAAATAATATGCGAGTCGCTTTTTATCTTTGGCTTGGCACTGAGTTTTAGTC 2361 |||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 2309 TCGTAGAGCAAATAATA--CGAGTCGCTTTT-ATCTTTGGCTTGGCACTGAGTTTTAGTC 2365 Query 2362 GCCATTTTTTCTTATTATGATTTCTTAAATTGTAACACTAGAGAAGAAGAAAGAAAAGAA 2421 |||||||||||||| | ||||||||||||||||||||||||||||||| | |||||||| Sbjct 2366 GCCATTTTTTCTTACTGTGATTTCTTAAATTGTAACACTAGAGAAGAA-A--GAAAAGAA 2422 Query 2422 ACGATGGTACAAGTACAACAT--CATATTTCTGATTTTTTCTGTT 2464 || |||||||||||||| ||| ||||||||||| |||| ||||| Sbjct 2423 ACAATGGTACAAGTACACCATATCATATTTCTGAGTTTTACTGTT 2467 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 122256840091 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5