BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484140
Length=2464
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02160.1 | Symbols: | CCCH-type zinc finger family protein ... 3367 0.0
> AT2G02160.1 | Symbols: | CCCH-type zinc finger family protein
| chr2:553110-556113 REVERSE LENGTH=2521
Length=2521
Score = 3367 bits (1823), Expect = 0.0
Identities = 2292/2505 (91%), Gaps = 86/2505 (3%)
Strand=Plus/Plus
Query 2 aaaaaaaaaaaCTTTTAGGCTTAGCTTTAAAGGGcacacacacacaATCGCGAGTTTCTC 61
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 7 AAAAAAAAAAACTTTTAGGCTTAGCTTTAAAGGGCACACACACACAGTCGCGAGTTTCTC 66
Query 62 TCTGGTTCGCTCTTTGTGGCGGCTCGTCTTCTTCTTCTTTTTCCACGGGACTCTCTCTTG 121
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 67 TCTGGTGCGCTCTTTGTGGCGGCTCGTCTTCTTCTTCTTCTTCCACGGGACTCTCTC-TG 125
Query 122 -ATCGGTGATTATCGATCTTTCTAGGGTTTCGATCTGAAACCTTGCGATCTACTTGAAAG 180
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 126 AATCGGTGATTTTCGATCTTCCTAGGGTTTCGATCTGAAACCTTGCGATCTACTTGAAAG 185
Query 181 ATAGATTTAGAAATTTCCAAGTAATAATAATGTTTGCGCCTGCGACTCAACCGCAACAGC 240
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 AGAGATTCAGAAATTTCCAAGTAATAATAATGTTTGCGCCTGCGACTCAACCGCAACAGC 245
Query 241 AGCA-GCAGGAGAAGAAGCAATCGGAGACTGTTTCATCTGCTGAAGAAGATGCTTTGAAG 299
| || | || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 246 AACATG-AGCAGAAGAAGCAATCAGAGACTGTTTCATCTGCTGAAGAAGATGCTTTGAAG 304
Query 300 TGGAACACCGATTGCGTTTACTTTCTCGCTTCTCCTTTAACCTGCAAGAAGGGACCTGAG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TGGAACACCGATTGCGTTTACTTTCTCGCTTCTCCTTTAACCTGCAAGAAGGGACCTGAA 364
Query 360 TGTGAGTATCGCCACAGTGAGTATGCGCGTATGAACCCAAGGGATTGCTATTATTGGTTG 419
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 365 TGCGAGTATCGCCACAGTGAGTATGCGCGTATGAACCCGAGGGATTGCTATTATTGGTTG 424
Query 420 AATGGAAATTGTATGAATCCCAAATGTGGCTTTCGGCATCCTCCTTTGGAGGGATTGTTG 479
|||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 425 AATGGAAACTGTTTGAATCCCAAATGTGGATTTCGGCATCCTCCTTTGGAGGGATTGTTG 484
Query 480 GGAAATCAAGGAGGTGCTCCTGCTGGTTCTGTACAGCCAACT-CATGCAACTGCGCAGCA 538
||||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||||
Sbjct 485 GGAAATCAAGGAGGTGCTCCTGCTGTTTCTGTACAGCCAA-TACATGCAACCGCGCAGCA 543
Query 539 TTCCG-GTGTTGCAAAACAGCCGGTTCCGTGTGTGTTCTTTCAAAAAGGCATGTGTATGA 597
| || |||||||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 544 T-CCTAGTGTTGCAAAACAGCCTGTTCCATGTCTGTTCTTTCAAAAAGGCATGTGTATGA 602
Query 598 AAGGAGATATGTGTTCATTCTTGCACACACCGAATCCTGCTGCTTATAAAAAACTGCTTT 657
|||||||||||||||| ||||||||||| |||||||||||||| |||||||||| || |
Sbjct 603 AAGGAGATATGTGTTCGTTCTTGCACACGCCGAATCCTGCTGCGTATAAAAAACAGCAT- 661
Query 658 CC-GTAGAAGCTAAGCCTGCTGCTGATCCTCAGTTTTCTAAAAAGCCAATTGAAAATAAC 716
|| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 662 CCTGTAGAAGCTAAGCCTGCTACTGATCCTCAGTGTTCTAAAAAGCCAATTGAAAATAAC 721
Query 717 ACCGGGGAGAAGAAATTTGCTGATGCTAATCTCTCAAAGGCGGTTAAAGCACATGTTGAC 776
|| | |||||||||| || |||||| |||||||||||||| |||||||| |||| ||||
Sbjct 722 ACTGAGGAGAAGAAACTTCCTGATGTTAATCTCTCAAAGGTGGTTAAAGGACATACTGAC 781
Query 777 ATATCGGCTGCGCCAAGAGTCACATCTGCTGGCCTAAGGGATAGTAGACGCGTAGAGGGA 836
||||||||||| ||||||||| | ||| |||| ||||||||||||||| | |||||||||
Sbjct 782 ATATCGGCTGCACCAAGAGTCGCTTCTACTGGACTAAGGGATAGTAGAAGTGTAGAGGGA 841
Query 837 TATGTTCCAGAAC-ATATGGGATATGACCCTGTTGTACAGAAAAAGGTTACGGGAGTTCC 895
|| ||||| ||| || |||||||||| |||||||| |||| ||||| | | ||| ||||
Sbjct 842 TACATTCCA-AACCATGTGGGATATGAGCCTGTTGTGCAGAGAAAGGGTCCAGGA-TTCC 899
Query 896 -TTCCTTTACTGAAGGAGGCCATTCGACTCAGTTGCTTCATAAATATGGATCTGATGATA 954
||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 900 CTTCTTTTACTGAAGGAGGCCATTCTACTCAGTTGCTTCAGAAATATGGATCTGATGATA 959
Query 955 ATAACAGTTTCCACAATGGTAAGGACGCAGATGACGTTTTAAGAGAGTCGTCTCCTGGGT 1014
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 960 ATAACAGTTTCCACAATGGTAAGGATGCAGATGACGTTTTAAGAGAGTCGTCTCCTGGGT 1019
Query 1015 TTGATGTTCTTGTGGATAATGAGGCTAGG-GATTCAGAGTATTATCGTGTTGAAGATCGA 1073
|||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||
Sbjct 1020 TTGATGTTCTTGTGGATAATGAGGCT-GGAGATTCTGAGTATTATCATGTTGAAGATCGA 1078
Query 1074 TATGGACGGAGAAGTCAGGAGGGAGGGAACTCTGTGAATGAATATGACCCTGATTTCAGT 1133
|||||||| |||||||||||| |||||||||| | | | ||||||||||||||||||
Sbjct 1079 TATGGACGTAGAAGTCAGGAGAGAGGGAACTCAG--A--G--TATGACCCTGATTTCAGT 1132
Query 1134 GCAATAGCTGATGATGA-A--GAAGCATTCCATGATCAGCGTTTTGATCCATATGATCAG 1190
||||| ||||||| ||| | |||||||| | ||| || ||||||||| ||||||||| |
Sbjct 1133 GCAATTGCTGATGGTGATAAAGAAGCATTACGTGAACAACGTTTTGATTCATATGATCGG 1192
Query 1191 AGGGAAGACAGGTATGCATGGGGCAACCGTCGAGTTTCTTCTGAGAGAGGAG-ATCATTC 1249
|||||||||||| | ||||||| | |||||||||||||||||||||| || ||| ||
Sbjct 1193 AGGGAAGACAGGG--G-ATGGGGCCATCGTCGAGTTTCTTCTGAGAGAG-AGGATCGTTT 1248
Query 1250 AGAAAGAAGGGTTTACGCAGAAGATGAGAGATCAGAGAACATATTGGCATCAGATCTGAG 1309
|| ||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 1249 GGACAGAAGGGTTTACGCAGAAGATGAGAGATCAGAGAACATACTGGAATCGGATCTGAG 1308
Query 1310 ATATCGTTTGGCTAAGCAGAGGAAAGTCAATGGTGTGAGAT---CAGTTGGAAGCCATGA 1366
||||||||||||||||||||| |||| ||||||| |||||| |||| ||| |||||||
Sbjct 1309 ATATCGTTTGGCTAAGCAGAGAAAAGGCAATGGTATGAGATTATCAGTAGGAGGCCATGA 1368
Query 1367 CTATGGTGCTCCTGACTCTTC-AGTGGAAAGAGGATATAGAGACTCTCGTAGGGATACAC 1425
||||| ||||||||||||||| | |||| |||||||||||||| ||||||||||||||||
Sbjct 1369 CTATGCTGCTCCTGACTCTTCGA-TGGACAGAGGATATAGAGAGTCTCGTAGGGATACAC 1427
Query 1426 TGAGGGAAAACTCCATTAGCAGCAGCCGTCTACAGGGTAGAATTAAGCTTTGTGAGAGAA 1485
||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct 1428 CGAGGGAAAACTCCATTAGCAGTAGTCGTCTTCAGGGTAGAATTAAGCTTCGTGAGAGAA 1487
Query 1486 GCAATGGCGACGAGGGTCACCACTTTGACAGAAGAAGTGAGAGGGGAAGGGACAGAAGCG 1545
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1488 GCAATGGCGAAGAGGGTCACCACTTTGACAGGAGAAGTGAGAGGGGAAGGGACAGAAGCG 1547
Query 1546 AGTTATCTTCTCAGGGTAGACTCCGAGATAGAATTAAGGGTAGGTTAGAGGAAAACCATA 1605
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 AGTTACCTTCTCAGGGTAGACTCCGAGATAGAATTAAGGGTAGGTTAGAGGAAAACCATA 1607
Query 1606 GTGGTAATCAGGAAAGAGGTTTCCGGGCTCCATGGGCGagaagaagagaaatggaagaag 1665
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1608 GTGGTAATCAGGAAAGAGGTTTCGGGGCTCCATGGGCGAGAAGAAGAGAAATGGAAGACG 1667
Query 1666 aaagaaaaCCAGCTCCTAAAAGCATTGCAGAAACTAAAAGCACCAGAGAGGAAAGTAAGC 1725
|||||||| ||||||||||||||| ||||| | | | || || ||||||
Sbjct 1668 AAAGAAAATCAGCTCCTAAAAGCA--GCAGA--------G-A---G-GA--AA-GTAAGC 1709
Query 1726 CAGAGCCATCTCTTGGGAAGAGGAAAAGCTTTGAAGAGGATCATCATAGTCATAAGCGAT 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 CAGAGCCATCTCTTGGGAAGAGGAAAAGCTTTGAAGAGGATCATCATAGTCATAAGCGAT 1769
Query 1786 CA-GGAGATTCATTTGCAGCTCCTTTGCCTTTCAGTGAGATTCTGAAGAGAAAAAGAGCG 1844
|| || ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||
Sbjct 1770 CAAGG-GATTCATTTGCAGCTCCATTGCCTTTCAGTGAGATTCTCAAGAGAAAAAAAGCG 1828
Query 1845 GCTGCATCTGGTGGTAGCAGACACAACAACAAGGACGAGACGATAACGAAAGAGGAAGCT 1904
|| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1829 GCCGCATCTGGTGGTAGCAGAAACAACAACAAGGACGAGACGATATCGAAAGAGGAAGCT 1888
Query 1905 GGAGATGAGACCAAACTCATAACAGAAGAGAAAACCGAGGTTGTCTCGGAACCCAAAGCT 1964
|||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1889 GGAGATGAGATCAAACTCATAACCGAAGAGAAAACCGAGGTTGTCTCTGAACCCAAAGCT 1948
Query 1965 GAAGTAGAAGAAGAAGGAACGATTATGGAGGAAGAAGAAGTTGTTGGGGAGGAAGTGTAT 2024
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1949 GAAGTAGAAGAAGAAGGAACGGTTATGGAGGAAGAAGAAATTGTTGGGGAGGAAGTGTAT 2008
Query 2025 GAAGGAAATGAAGATGAGCAAGCTTATGAAGGCGATGAGCTAAACGGAGAGTACTATTAC 2084
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2009 GAAGGAAATGAAGACGAGCAAGCTTATGAAGGCGATGAGCTAAACGGAGAGTACTATTAC 2068
Query 2085 GAAGAAGGATATGAAGAAGAGGGAGGAGAATACGCTTACGAAGAAGGTGAAGAAGTAGTT 2144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 GAAGAAGGATATGAAGAAGAGGGAGGAGAATACGCTTACGAAGAAGGTGAAGAAGTAGTT 2128
Query 2145 TATGCGGCtgaggaaggagaagaagaagtgacagaaggaggtgaagctgagggtgaagaa 2204
|| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 2129 TACGCGGCTGAGGAAGGAGAAGAAGAAGCAACAGAAGGAGGTGAAGGTGAGGGTGAAGAA 2188
Query 2205 gacattgagaagaagaCTGTTGAGATGTTGTCATAAAAGaa-aaa-a--a-----G---- 2251
||||||||||||||||| ||||||||||||||||||||||| ||| | | |
Sbjct 2189 GACATTGAGAAGAAGACCGTTGAGATGTTGTCATAAAAGAAGAAAGAGTAACACAGAAAA 2248
Query 2252 ---CTTTTACTCCTTTCCTCTGA-TCTCTCT----GCTTAATGCAAATGG-GAGA-GAAG 2301
||||| |||||||||||| ||||||| ||||||||||||||| |||| ||||
Sbjct 2249 AAGCTTTTGCTCCTTTCCTCTCTCTCTCTCTCTCTGCTTAATGCAAATGGAGAGAAGAAG 2308
Query 2302 TCGTTGAGCAAATAATATGCGAGTCGCTTTTTATCTTTGGCTTGGCACTGAGTTTTAGTC 2361
|||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 2309 TCGTAGAGCAAATAATA--CGAGTCGCTTTT-ATCTTTGGCTTGGCACTGAGTTTTAGTC 2365
Query 2362 GCCATTTTTTCTTATTATGATTTCTTAAATTGTAACACTAGAGAAGAAGAAAGAAAAGAA 2421
|||||||||||||| | ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2366 GCCATTTTTTCTTACTGTGATTTCTTAAATTGTAACACTAGAGAAGAA-A--GAAAAGAA 2422
Query 2422 ACGATGGTACAAGTACAACAT--CATATTTCTGATTTTTTCTGTT 2464
|| |||||||||||||| ||| ||||||||||| |||| |||||
Sbjct 2423 ACAATGGTACAAGTACACCATATCATATTTCTGAGTTTTACTGTT 2467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122256840091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5