BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484143
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02180.1 | Symbols: TOM3 | tobamovirus multiplication protei... 1720 0.0
AT1G14530.1 | Symbols: THH1 | Protein of unknown function (DUF1... 920 0.0
> AT2G02180.1 | Symbols: TOM3 | tobamovirus multiplication protein
3 | chr2:560864-563233 FORWARD LENGTH=1296
Length=1296
Score = 1720 bits (931), Expect = 0.0
Identities = 1075/1142 (94%), Gaps = 20/1142 (2%)
Strand=Plus/Plus
Query 16 AGAGAGTTCTTCATTATGTGTGTTCAAAATCTGAATCGAGAAGGAATCTGAATCGTTGTT 75
||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||| || |
Sbjct 54 AGAGAGTTC-TCATTATGTATATTCAAAATCTGAATCGAGAAGGAATCTGACTCG-TG-T 110
Query 76 AGATGAGAATCGGCGGCGTAGAGGTTGTGCGATTTGCGTCGGAGATGATGTCATCGTCAT 135
||||||||||||||||||| |||||| | ||||||||| | || |||| || | |
Sbjct 111 AGATGAGAATCGGCGGCGTCGAGGTTACGAAATTTGCGTC-G-GA-GATG--AT-G---T 161
Query 136 CGTCATCGTCTTCGTCTTCGTCGGCGGTGGAAATGTTGAATCTCAAGGAAGCTTCGAATT 195
|| ||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 162 CG---TCG---TCGTCTTCGTCGGCGGTGGAGATGTTGAATCTCAAAGAAGCTTCGAATT 215
Query 196 GGTGGTCAGACGTAAACGAGTCTCCGATTTGGCAGGATCGTATCTTCCATGTTCTCGCTG 255
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GGTGGTCAGACGTAAACGAATCTCCGATTTGGCAGGATCGTATCTTCCATGTTCTCGCTG 275
Query 256 TTCTCTACGGAATCGTTTCCGTCGTTGCTGTGATTCAACTTGTGAGAATACAATTGAGAG 315
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 276 TTCTCTACGGAATCGTTTCCCTCGTTGCTGTGATTCAACTTGTGAGAATACAATTGAGAG 335
Query 316 TTCCTGAATATGGTTGGACTACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATG 375
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 336 TTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATG 395
Query 376 GAGTTCGTGCTGTGGTGTTTGTCTTCAGAAGAAACGTGCAATTTATGCATCCAGAGATTC 435
|||||||||||||||||||||||||||| |||| || || |||||||| ||||||||||
Sbjct 396 GAGTTCGTGCTGTGGTGTTTGTCTTCAGGCGAAATGTTCAGTTTATGCAACCAGAGATTC 455
Query 436 TGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGG 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGG 515
Query 496 TTCTCTTCTGGGCTGAAATTTACTATCAGGCGCGTGCAGTATCGACTGATGGACTGAGGC 555
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 516 TTCTTTTCTGGGCTGAAATTTATTATCAGGCGCGTGCAGTATCGACTGATGGACTCAGGC 575
Query 556 CAAGCTTCTTCACAATAAATGCAGTTGTATATGTAGTTCAGATTGCTCTTTGGTTGGTTT 615
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 576 CAAGCTTCTTCACAATTAATGCAGTTGTATATGTAGTTCAGATTGCTCTATGGTTGGTTT 635
Query 616 TGTGGTGGAAGCCTGTTCGAATTATGATAATCCTATCTAAGATGTTCTTTGCAGGCGTTT 675
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 636 TGTGGTGGAAGCCTGTTCGAGTTATGGTAATCCTATCTAAGATGTTCTTTGCAGGTGTTT 695
Query 676 CATTGTTCGCTGCGCTTGGATTTTTACTTTATGGTGGAAGGCTTTTCTTAATGTTGCAAC 735
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 696 CATTGTTCGCTGCCCTTGGATTTTTACTTTATGGTGGAAGGCTTTTCCTAATGTTGCAAC 755
Query 736 GATTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAGGTTGGTTACGTGACAA 795
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GGTTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAGGTTGGTTACGTGACAA 815
Query 796 CCATATGCTTTACGTGTTTCCTCATCAGATGTATCATGATGTGCTTTGCTGCTTTTGATG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 816 CCATATGCTTTACGTGTTTCCTCATCAGATGTATCATGATGTGCTTTGCTGCTTTCGATG 875
Query 856 AGGGGGCAAACCTTGATGTGTTAGATCATCCCATCCTCAACTTCATATATTACCTGTTGG 915
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 876 AGGGGGCAAACCTTGATGTGTTAGATCACCCCATCCTTAACTTCATATATTACCTGTTGG 935
Query 916 TAGAGATATTACCGTCCTCTCTGGTCCTGTTCATCTTGAGAAAGCTACCACCAAAACGAG 975
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 936 TAGAGATATTACCCTCCTCTCTGGTCCTCTTCATCTTGAGAAAGCTACCACCAAAACGAG 995
Query 976 GCATTACACAATACCATCAGATTCGCTGAAATGTAAAGACACGACAACTAATGATCGGAT 1035
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 996 GCATTACACAATACCATCAGATTCGCTGAAATGTAAAGGCACGACAACTAATGATCAGAT 1055
Query 1036 GAAGAAGACAAGACCATGTTTGTTATATGCTTTTCTGTATTCAATAGAGAGAAAAGCGTA 1095
|||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 1056 GAAGAAGACAAGACTATGGTTGTT-TATGCTTTTCTGTAATCAATAGAGAGAAAAGCATA 1114
Query 1096 AGATACAAATGAA-TAGATCTAAAGCTGGTAAGTCTTTTTGGTTGATGATGGGAATGAAT 1154
|||| ||||||| |||||||||||||| |||| | ||||||||||||||||||||| ||
Sbjct 1115 AGATGGAAATGAAATAGATCTAAAGCTGATAAGGCCTTTTGGTTGATGATGGGAATGGAT 1174
Query 1155 TC 1156
||
Sbjct 1175 TC 1176
> AT1G14530.1 | Symbols: THH1 | Protein of unknown function (DUF1084)
| chr1:4970858-4973726 REVERSE LENGTH=1454
Length=1454
Score = 920 bits (498), Expect = 0.0
Identities = 718/825 (87%), Gaps = 11/825 (1%)
Strand=Plus/Plus
Query 191 GAATTGGTGGTCAGACGTAAACGAGTCTCCGATTTGGCAGGATCGTATCTTCCATGTTCT 250
||||||||||| || || || || |||||| | ||||||||||||||||||||||||||
Sbjct 198 GAATTGGTGGTGGGATGTGAATGAATCTCCGGTGTGGCAGGATCGTATCTTCCATGTTCT 257
Query 251 CGCTGTTCTCTACGGAATCGTTTCCGTCGTTGCTGTGATTCAACTT-GTGAGAATACAAT 309
|||||||| || ||||||||||||||| |||||||||||||| || || ||||||||||
Sbjct 258 TGCTGTTCTATATGGAATCGTTTCCGTCATTGCTGTGATTCAA-TTGGTAAGAATACAAT 316
Query 310 TGAGAGTTCCTGAATATGGTTGGACTACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTG 369
|||||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||| | |
Sbjct 317 TGAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCATGG 376
Query 370 TTAATGGAGTTCGTGCTGTGGTGTTTGTCTTCAGAAGAAACGTGCA-A-TTTATGCATCC 427
|||| |||||||| ||| |||| ||| ||||| | || | |||| | ||||| ||
Sbjct 377 TTAACGGAGTTCGAGCTCTGGTTTTTCTCTTCCGGCGAGA--TGCACAGAACATGCAGCC 434
Query 428 AGAGATTCTGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGC 487
||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 435 AGAGATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGC 494
Query 488 TCTTCTGGTTCTCTTCTGGGCTGAAATTTACTATCAGGCGCGTGCAGTATCGACTGATGG 547
|||||||||||||| ||||| || |||||||| ||||| ||||| ||||||||||||||
Sbjct 495 GCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGGCACGTGCTGTATCGACTGATGG 554
Query 548 ACTGAGGCCAAGCTTCTTCACAATAAATGCAGTTGTATATGTAGTTCAGATTGCTCTTTG 607
|||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 555 ACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAGATTGCTCTTTG 614
Query 608 GTTGGTTTTGTGGTGGAAGCCTGTTCGAA-TTATGATAATCCTATCTAAGATGTTCTTTG 666
|||||||||||||||||||||||||| | ||||| ||||| | ||||||||||||||||
Sbjct 615 GTTGGTTTTGTGGTGGAAGCCTGTTC-ACCTTATGGTAATCATTTCTAAGATGTTCTTTG 673
Query 667 CAGGCGTTTCATTGTTCGCTGCGCTTGGATTTTTACTT-TATGGTGGAAGGCTTTTCTTA 725
|||| || |||||||| || || ||||| |||||| || ||||| |||||||||||| |
Sbjct 674 CAGGTGTCTCATTGTTTGCGGCCCTTGGCTTTTTA-TTATATGGAGGAAGGCTTTTCCTG 732
Query 726 ATGTTGCAACGATTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAGGTTGGT 785
||| ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 733 ATGCTGCAACGATTTCCAGTAGAGTCTAAAGGGCGGCGCAAGAAGCTACAAGAGGTTGGC 792
Query 786 TACGTGACAACCATATGCTTTACGTGTTTCCTCATCAGATGTATCATGATGTGCTTTGCT 845
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 793 TACGTGACAACCATATGCTTTACATGTTTCCTCATCAGATGTATCATGATGTGCTTTGAT 852
Query 846 GCTTTTGATGAGGGGGCAAACCTTGATGTGTTAGATCATCCCATCCTCAACTTCATATAT 905
|| ||||| || | ||| | |||||||| ||||||||||| ||||| ||||||||||||
Sbjct 853 GCGTTTGACGATGCAGCAGATCTTGATGTCTTAGATCATCCAATCCTAAACTTCATATAT 912
Query 906 TACCTGTTGGTAGAGATATTACCGTCCTCTCTGGTCCTGTTCATCTTGAGAAAGCTACCA 965
||| ||||||| |||||||| || || ||||||||||| || ||| | |||||||| ||
Sbjct 913 TACTTGTTGGTGGAGATATTGCCATCGTCTCTGGTCCTCTTTATCCTAAGAAAGCTTCCG 972
Query 966 CCAAAACGAGGCATTACACAATACCATCAGATTCGCTGAA-ATGT 1009
|||||||| || || ||||| |||||||| || | |||| ||||
Sbjct 973 CCAAAACGCGGTATCACACAGTACCATCAAATCCAATGAACATGT 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5