BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484149
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02230.1 | Symbols: AtPP2-B1, PP2-B1 | phloem protein 2-B1 |... 1266 0.0
> AT2G02230.1 | Symbols: AtPP2-B1, PP2-B1 | phloem protein 2-B1
| chr2:590221-591650 REVERSE LENGTH=1238
Length=1238
Score = 1266 bits (685), Expect = 0.0
Identities = 919/1024 (90%), Gaps = 47/1024 (5%)
Strand=Plus/Plus
Query 25 TCAGATTCCAAAAACAATGGAACAAATTCACGGCGGAGATTCGAATTCCGGCGGC----- 79
||||||| | |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 41 TCAGATT-CGAAAACAATGGAACAAATTCACGGCGGCGATTCGAATTCCGGCGGCGGAGG 99
Query 80 ----GGAAGTAGCCGAAACGATGAGATTGCTGTGACCAGAGCGTCGCGGTTCGATACATT 135
||||||||||| |||||||||||| ||||||| ||||||||||| |||||| ||||
Sbjct 100 AGGAGGAAGTAGCCGGAACGATGAGATTTCTGTGACGAGAGCGTCGCGTTTCGATGCATT 159
Query 136 GCCGGAAGATTGTATCTCGAAGGTGATTTCACATACGAGTCCACGAGACGCTTGTGTTGT 195
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 160 GCCGGAAGATTGTATCTCGAAGGTGATTTCACATACGAGTCCTCGGGACGCTTGTGTTGT 219
Query 196 GGCTTCGGTTTCGAAAACGGTGAAATCGGCGGCGCAATCGGATTTGGTGTGGGAGATGTT 255
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 220 GGCTTCGGTTTCGAAATCGGTGAAATCTGCGGCGCAATCGGATTTGGTTTGGGAGATGTT 279
Query 256 TCTTCCGTCGGAGTATTCGTCTCTTGTTGTTCCTCGATCGGCGAATC-TCTTATCGAAAA 314
||||||||||||||| |||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct 280 TCTTCCGTCGGAGTACTCGTCTCTTGTTCTTCA---ATCAGCGAATCAT-TTATCGAAAA 335
Query 315 AGGAGAtttttttATCTCTCGCTAATGATTCTGTTTTGATTGAAGATGGCAAAAAGAGCT 374
||||||| ||||||||||||||| || | ||||||||| ||||| |||||||||||||||
Sbjct 336 AGGAGATCTTTTTATCTCTCGCTGATAACTCTGTTTTGGTTGAAAATGGCAAAAAGAGCT 395
Query 375 TTTGGTTGGAGAAAGCTAGTGGGAAGAAGTGTT-TCATGTTATCAGCGATGGATTTGACG 433
||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 396 TTTGGGTGGAGAAAGCTAGTGGGAAGAAGTGTTAT-ATGTTATCAGCGATGGAATTGACG 454
Query 434 ATCATTTGGGGAGATTCTCCTGCTTATTGGCAATGGATTACAGTTCCTGAATCTAAGTTT 493
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 455 ATCATTTGGGGAGATTCTCCTGCTTATTGGAAATGGATTACAGTTCCTGAATCTAAGTTT 514
Query 494 GAGAAAGTAGCGGAGTTGCGTAATGTGTGTTGGTTTGAGATTTGGGGGAAGATAAGTTGC 553
||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 515 GAGAAAGTAGCGGAGTTGCGTAATGTGTGTTGGTTTGAGGTTCGGGGAAAGATAAGTTGT 574
Query 554 GGAATGTTATCGAAAGGGACTCATTACTCGGTTTACGTAGTGTTCAAGACGGCATATGGT 613
||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 575 GGAATGTTATCAAAAGGGACTCATTACTCGGTTTACGTAGTGTTCAAGACAGCAAATGGT 634
Query 614 AGATCATATGGGTTTGAT-TCCGTACCTGTGGAAGCTGGAGTTGGTTTTGTGGGCAAAGA 672
|||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 635 AGATCATATGGGTTTGATCTC-GTACCTGTGGAAGCTGGAGTTGGTTTTGTGGGGAAAGT 693
Query 673 AGCTACCAAGAAATCAGTGT-TTCTCGAATCTGGTG-TG-G-ATTCACGCAGCGGTT-TT 727
|||||||||||| ||||||| || | ||||| ||| || | ||||||| |||| | ||
Sbjct 694 AGCTACCAAGAAGTCAGTGTATTTT-GAATCCGGTAATGCGGATTCACGGAGCGCTACTT 752
Query 728 GG--TTACTCGGGGATTTCACACGCTGC-GGTTTCTAGAGCGTTTAGGATGAGGCGTCCG 784
||||||||||||||| | || | |||||||||||||||||||||||||||||||
Sbjct 753 CCCATTACTCGGGGATTTCGTATGC-GATGGTTTCTAGAGCGTTTAGGATGAGGCGTCCG 811
Query 785 TGGCTGCGGGTTCCGagagaagaagaagaagaagaagTTGAAGGAGAGAGGGAGCATGGT 844
||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct 812 TGGATGCAGGTTC--AGAGA-GAAGAAGAAGAAGAAGTTGAAGGAGAAAGGGAGCGTGGT 868
Query 845 AGGAATGTGGAGGGGCCAAAGGAGAGAGTAGATGGGTGGAGTGAAGTGGAGCTTGGAAGG 904
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 869 ATGAATGTGGTGGGGCCAAAGGAGAGAGTAGATGGGTGGAGTGAAGTGGAGCTTGGAAAG 928
Query 905 TTTTTCATTGACAATGGAGGTTGTG---ATGA----A---AT-AGA---A-ATTAGTTTG 949
|||| |||| ||||||||||||||| |||| | || ||| | |||||| |
Sbjct 929 TTTTACATTAACAATGGAGGTTGTGGTGATGATGGTAGTGATGAGATTGAGATTAGTATA 988
Query 950 ATGGAGACTCAGAATGGAAATTGGAAGAGTGGTTTGATTATTCAGGGAATTGAGATCAGG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 ATGGAGACTCAGAATGGAAATTGGAAGAGTGGTTTGATTATTCAGGGAATTGAGATCAGG 1048
Query 1010 CCTG 1013
||||
Sbjct 1049 CCTG 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53563981515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5