BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484153
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02370.1 | Symbols: | SNARE associated Golgi protein family... 1792 0.0
> AT2G02370.1 | Symbols: | SNARE associated Golgi protein family
| chr2:621155-623344 FORWARD LENGTH=1454
Length=1454
Score = 1792 bits (970), Expect = 0.0
Identities = 1239/1361 (91%), Gaps = 49/1361 (4%)
Strand=Plus/Plus
Query 18 AAACGACACTAAACCTGAAAAGGCAGACGTAAATCCGCCGCAACAACCCAtttttttCCG 77
|||| |||||||||||| ||| || |||||||||||||||||||||||| |||||||||
Sbjct 76 AAACAACACTAAACCTG-AAA--CAAACGTAAATCCGCCGCAACAACCCAGTTTTTTCCG 132
Query 78 TCGGCGTAAGAA-TTTCCGCCGCCGTAACGCCGTTGTTTTCT-CCACGAAGCTTGATTAG 135
|||||| | || |||| ||||||||||||||| |||| | ||| |||||||||||||
Sbjct 133 ACGGCGT-ACAAGCTTCCTCCGCCGTAACGCCGTCGTTTAATACCAAGAAGCTTGATTAG 191
Query 136 G--T---TAGTGTGTGATTTCTTTT-AGGTTTTGAACACTGATGTCAAACACATTGAAAG 189
| | ||||||||||||| |||| ||||| |||||||||||||||||| |||||||||
Sbjct 192 GTTTCCGTAGTGTGTGATTT-TTTTAAGGTTCTGAACACTGATGTCAAACCCATTGAAAG 250
Query 190 AGTCAAGAGAGGATAATACAGATTCTGTTGGTCAGATGAGGGAAGATAATGAGTATGTTC 249
||||||||||||||| | || ||||| | ||| |||| || ||||||||||||||||
Sbjct 251 AGTCAAGAGAGGATATTGCAAATTCTACTCCTCACATGA-GG--GATAATGAGTATGTTC 307
Query 250 GGCTTGTTGTTGCTCATGAAGCCTCCGCTGCTGAAACTGTGTTGTCTCTATCGCAATCAG 309
|||| ||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 308 GGCTAGTTGTGGCTCATGAAGCCTCCCCAGCTGAAACCGTGTTGTCTCTATCGCAATCAG 367
Query 310 AGGTGCAGAGTAAGAAATTTATGTGGTGGTTGAAAGCTTTTGGG-ATATTTGCAGTTGCT 368
||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||
Sbjct 368 AGGTGCAGAGTAAGAAATTTATGTGGTGGTTAAAAGC-TTTGGGAATATGTGCAGTTGCT 426
Query 369 CTCTTGCTTACGCTTGTTTTTGGCAAATGGGGAGTTCCGTTTGTATTCCAAAAGGTTCTC 428
|||||||||||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct 427 CTCTTGCTTACGCTTGTTTTCGGAAAATGGGGAGTTCCGTTTGTGTTTCAAAAGGTTCTT 486
Query 429 ATTCCAATTTTGCAATGGGAAGCAACTGCGTTTGGCCGTCCTATGCTCGCGATTGTCCTT 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ATTCCAATTTTGCAATGGGAAGCAACTGCGTTTGGCCGTCCTATGCTCGCGATTGTCCTT 546
Query 489 GTGGTTTCCTTGGCTTTGTTTCCTGTGTTCTTGATACCTTCTGGTCCTTCCATGTGGTTA 548
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GTTGTTTCCTTGGCTTTGTTTCCTGTGTTCTTGATACCTTCTGGTCCTTCCATGTGGTTA 606
Query 549 GCTGGGATGATTTTTGGTTATGGCCTCGGTTTTGTTATAATCATGGTTGGTACCACCATC 608
||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 607 GCTGGGATGATTTTTGGTTATGGTCTCGGTTTTGTTATTATCATGGTTGGAACCACCATT 666
Query 609 GGCATGGTCCTTCCTTACCTAATCGGGCTAATGTTCCGTGATCGCCTCCATCAATGGTTA 668
|||||||| || |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 667 GGCATGGTTCTCCCTTACTTAATCGGGCTTATGTTCCGTGATCGCCTCCATCAATGGTTA 726
Query 669 AAAAGGTGGCCTCGTCAAGCTGCTGTTCTTAGACTAGCTGCAGAAGGAAGCTGGTTCCAT 728
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 727 AAAAGATGGCCTCGTCAAGCTGCTGTTCTAAGACTAGCTGCAGAAGGAAGCTGGTTCCAT 786
Query 729 CAATTTAGAGTCGTGGCAATCTTTCGGATTTCCCCATTTCCTTACACGATTTTTAACTAC 788
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 787 CAATTCAGAGTCGTGGCAATCTTTCGGGTTTCCCCATTTCCTTACACGATTTTTAACTAC 846
Query 789 GCAATTGTTGTGACAAGCATGAGATTCTGGCCTTACTTCTTCGGATCCATTGCAGGAATG 848
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 847 GCAATCGTCGTGACAAGCATGAGATTCTGGCCTTACTTCTTCGGATCCATAGCAGGAATG 906
Query 849 ATACCAGAAGCTTTCATCTACATTTATAGTGGTCGGTTGATCAGAACATTTGCAGATGTG 908
|||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||
Sbjct 907 ATACCAGAAGCTTTCATCTACATTTACAGCGGTCGGTTAATCAGAACATTCGCAGATGTG 966
Query 909 CAATACGGACATCAACGTTTGACAACAGTGGAGATTGTGTACAATATAATCTCCTT-GAT 967
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 967 CAATACGGACATCAACGTTTGACAACAGTGGAGATTGTGTACAATGTAATCTCCTTAG-T 1025
Query 968 CATTGCGGTTGTGACCACTGTTGCTTTCACTGTGTATGCGAAAAGAGCTTTGAGAGAGCT 1027
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1026 CATTGCGGTTGTGACCACTGTTGCTTTCACTGTGTACGCGAAAAGAGCTTTGAGAGAGCT 1085
Query 1028 TCAAAACGCAGAAGCTAATGAAGATGAAGAAGTTCCGGTAAGAAAACAGGCAAGATTTGA 1087
||||||||||||||||||||||||||||||||||| ||||||||| | | |||| ||
Sbjct 1086 TCAAAACGCAGAAGCTAATGAAGATGAAGAAGTTCAAGTAAGAAAAGTG--A-GATTCGA 1142
Query 1088 GATGAAGAATGTTGTTCAACACGAAGAAGATAATCATCAGCGTATGCCTTAATCCGAAAG 1147
||||||||| || ||||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 1143 GATGAAGAACGTAGTTCAGCACGAAGAAGATAATCATCAGCGTTTGCCTTAG-CCGAAAG 1201
Query 1148 TTGACACAAAGCTATGGTAGGTTTTGTATAAAGCTTTGAACGTTGACATGTTCTTCAGCA 1207
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1202 TTGACACAAAGCTAAGATAGGTTT-GTATAAAGCTTTGAACGTTGACATGTTCTTCAGCA 1260
Query 1208 GGAGT-AGTAGTAAATAACAAAAGGGGTaaaaaaa-----a-a--G-A------CTA-G- 1249
||| | || |||||||||||||||||||||||||| | | | | ||| |
Sbjct 1261 GGATTTAG-AGTAAATAACAAAAGGGGTAAAAAAAGTCTGATATAGTAGGAAGACTAAGA 1319
Query 1250 -T---CAAGATTGGATTTAAATTAGTGTGACTGATTCCAAGTATTGAAATAAATAAAACA 1305
| |||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
Sbjct 1320 CTAGTCAAGATTGGATTTATATTAGTGTGACTGATTCCAATTATTGAAACAAATAAAAGA 1379
Query 1306 AGCATTTAGGCTATAAATAGTGTATGAAAATCTGGATGCTC 1346
||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1380 AGCATTTAGGCTA-AAATAGTGTATGAAAATATGGATGCTC 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5