BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484158
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02400.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1698 0.0
> AT2G02400.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr2:631236-632575 REVERSE LENGTH=1260
Length=1260
Score = 1698 bits (919), Expect = 0.0
Identities = 1034/1089 (95%), Gaps = 9/1089 (1%)
Strand=Plus/Plus
Query 43 TAAATTGCGAT----AGAGAG-A-AAATAAATTCTCAGTGAGCTCTTATTTGATCAACAA 96
||||||||||| |||||| | ||| ||||||||||||||| |||| |||||||||||
Sbjct 69 TAAATTGCGATAGAGAGAGAGAACAAAAAAATTCTCAGTGAGCGCTTA-TTGATCAACAA 127
Query 97 TGGCGAAAGAGACAGTGTGTGTAACCGGAGCTAATGGTTTCATTGGATCTTGGATAATCC 156
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 128 TGGCGAAAGAGACAGTGTGTGTAACCGGAGCTAATGGTTTCATCGGATCTTGGATAATCC 187
Query 157 GAACGTTAATTGAGAAAGGTTATACAAAAATCCACGCTTCGATTTACCCAGGATCCGACC 216
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 188 GAACGTTAATTGAGAAAGGATATACTAAAATCCACGCTTCGATTTACCCAGGATCCGACC 247
Query 217 CGACTCATCTTCTGAAACTACCCGGATCTGATTCGAAGATCAAGATCTTTGAAGCGGATC 276
|||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 248 CGACTCATCTTCTGCAACTACCCGGATCCGATTCTAAGATCAAGATCTTTGAAGCGGATC 307
Query 277 TCTTAGACTCCGATGCAATCTCCAGAGCTATTGATGGATGTGCGGGAGTGTTCCACGTGG 336
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TCTTAGACTCTGATGCAATCTCCAGAGCTATTGATGGATGTGCGGGAGTGTTCCACGTGG 367
Query 337 CGTCACCTTGTACGTTGGATCCACCGGTTA-ATCCAGAGAAGGAACTGGTCGAACCGGCG 395
|||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct 368 CGTCACCTTGTACGTTGGATCCACCGGT-AGATCCAGAGAAGGAGCTGGTCGAACCGGCG 426
Query 396 GTTAAAGGAACGATCAATGTGTTGGAAGCTGCTAAAAGGTTTAATGTGAGACGCGTGGTG 455
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 427 GTTAAGGGAACGATCAATGTGTTGGAAGCTGCTAAGAGGTTTAATGTGAGACGCGTGGTG 486
Query 456 ATCACGTCATCTATCTCCGCCTTGGTTCCTAACCCTAATTGGCCGGAAAGAGTCCCCGTC 515
|||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 487 ATCACGTCATCTATCTCCGCATTGGTTCCTAACCCTAATTGGCCGGAAAAAGTTCCCGTC 546
Query 516 GATGAATCGTCGTGGACCGATCTCGATTTTTGCAAGTCGATGCAGAAATGGTATCCAATT 575
||||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 547 GATGAGTCGTCGTGGTCCGATCTTGATTTTTGCAAGTCGAGGCAGAAATGGTATCCAATT 606
Query 576 TCGAAGACATTAGCTGAGAAAGCAGCTTGGGATTTTTCGGAGAAGCATGGAACCAACATT 635
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 607 TCGAAGACATTAGCTGAGAAAGCAGCTTGGGAATTTTCGGAGAAGCATGGAACCAACATT 666
Query 636 GTGACGATCCATCCATCAACATGTCTCGGACCGCTTCTGCAACCGAACCTAAACGCAAGC 695
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTGACGATTCATCCATCAACATGTCTCGGACCGCTTCTGCAACCGAACCTAAACGCAAGC 726
Query 696 TGTGCCGTTTTGCTACAGCTCTTACAAGGCTCGACAGACACGCAAGAGCATCACTGGCTT 755
||||| ||| |||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 727 TGTGCTGTTCTGCTACAGCTTTTACAAGGCTCGACCGAGACGCAAGAGCATCACTGGCTC 786
Query 756 GGTGTGGTACATGTGAGGGATGTGGCTAAAGGTCATGTGATGTTATTCGAAACACCTGAA 815
|||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 787 GGTGTGGTTCACGTGAAAGATGTGGCTAAAGGTCATGTGATGCTATTCGAAACACCTGAC 846
Query 816 GCTTCTGGTCGGTTTCTATGCACTAATGGGATTTATCAGTTCAGTGAGTTTGCTGCTCTT 875
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GCTTCTGGACGGTTTTTATGCACTAATGGGATTTATCAGTTCAGTGAGTTTGCTGCTCTT 906
Query 876 GTGTCCAAGCTCTTCCCTGAGTTTGCTGTTCACAGGTTTGATAAAGAGACTCAACCTGGG 935
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 907 GTGTCTAAGCTCTTCCCTGAGTTTGCTGTTCACAAGTTTGATAAAGAGACTCAACCTGGG 966
Query 936 CTTACGTCGTGTATTGATGCGGCTAAGAGATTGATTGAGCTCGGGCTGGTTTTCACTGCT 995
||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 967 CTTACGTCGTGTAATGATGCGGCTAAGCGATTGATTGAGCTCGGGCTGGTTTTTACTGCG 1026
Query 996 GTTGAAGATGCTGTTAAGGAGACGGTCCAGAGTCTTAGAGACAAAGGCTTCCTCTGAGCA 1055
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1027 GTTGAAGATGCGGTTAAGGAGACGGTCCAGAGTCTTAGAGACAAAGGCTTCCTCTGAGAA 1086
Query 1056 TGTATAATATATCTTTGCAAATTTCAAACTCTGTGACCTTTATTGTATGATACAAGTAGA 1115
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1087 TGTATGATATATCTTTGCAAATTTCAAAATCTGTGACCTTTATTGTATGATACAAGTAGA 1146
Query 1116 GGAACTAAG 1124
| |||||||
Sbjct 1147 GAAACTAAG 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55220599500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5