BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484160
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02450.2 | Symbols: ANAC034, ANAC035, LOV1, NAC035 | NAC dom... 1653 0.0
> AT2G02450.2 | Symbols: ANAC034, ANAC035, LOV1, NAC035 | NAC domain
containing protein 35 | chr2:648044-650814 FORWARD LENGTH=1410
Length=1410
Score = 1653 bits (895), Expect = 0.0
Identities = 960/991 (97%), Gaps = 6/991 (1%)
Strand=Plus/Plus
Query 1 ATGGCAATTGTATCCTCCACAACAAGCATCATTCCCATGAGTAACCAAGTCAACAATAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAATTGTATCCTCCACAACAAGCATCATTCCCATGAGTAACCAAGTCAACAATAAC 60
Query 61 GAAAAAGGTATAGAAGACGATGATCACAGAGGCGGCCAAGAGAGTCATGTCCAAAATGAT 120
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GAAAAAGGTATAGAAGACAATGATCATAGAGGCGGCCAAGAGAGTCATGTCCAAAATGAA 120
Query 121 GATGAAGCAGATGATCATGATCATGACATGGTCATGCCCGGATTCAGATTCCATCCTACC 180
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GATGAAGCTGATGATCATGATCATGACATGGTCATGCCCGGATTTAGATTCCATCCTACC 180
Query 181 GAAGAAGAACTCATAGAGTTTTACCTTCGCCGAAAAGTTGAAGGCAAACGCTTCAATGTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GAAGAAGAACTCATAGAGTTTTACCTTCGCCGAAAAGTTGAAGGCAAACGCTTTAATGTA 240
Query 241 GAACTCATCACTTTCCTCGATCTTTATCGCTATGATCCTTGGGAACTTCCTGCTATGGCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAACTCATCACTTTCCTCGATCTTTATCGCTATGATCCTTGGGAACTTCCTGCTATGGCG 300
Query 301 GCTATAGGAGAGAAAGAGTGGTACTTCTATGTGCCAAGAGATCGGAAATATAGAAATGGA 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCGATAGGAGAGAAAGAGTGGTACTTCTATGTGCCAAGAGATCGGAAATATAGAAATGGA 360
Query 361 GATAGACCAAACCGAGTAACGACTTCAGGATATTGGAAAGCCACCGGAGCTGATCGGATG 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 GATAGACCGAACCGAGTAACGACTTCAGGATATTGGAAAGCCACCGGAGCTGATAGGATG 420
Query 421 ATCAGATCGGAGACATCTCGGCCTATCGGATTAAAGAAAACCCTAGTTTTCTACTCCGGT 480
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 ATCAGATCGGAGACTTCTCGGCCTATCGGATTAAAGAAAACCCTAGTTTTCTACTCTGGT 480
Query 481 AAAGCCCCTAAAGGCACTCGTACTAGTTGGATCATGAACGAGTATCGTCTTCCTCACCAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AAAGCCCCTAAAGGCACTCGTACTAGTTGGATCATGAACGAGTATCGTCTTCCGCACCAT 540
Query 541 GAAACCGAGAAATACCAAAAGGCTGAAATATCATTATGCCGAGTGTACAAAAGGCCAGGA 600
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 GAAACCGAGAAGTACCAAAAGGCTGAAATATCATTGTGCCGAGTGTACAAAAGGCCAGGA 600
Query 601 GTAGAAGATCATCCATCGGTACCACGTTCTCTCTCCACAAGACATCATAACCATAACTCA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTAGAAGATCATCCATCGGTACCACGTTCTCTCTCCACAAGACATCATAACCATAACTCA 660
Query 661 TCGTCATCATCCCGTTTAGCCTTAAGacaacaacaacaccattcatcctcctctaatcat 720
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCGACATCATCCCGTTTAGCCTTAAGACAACAACAACACCATTCATCCTCCTCTAATCAT 720
Query 721 tccgacaacaaccttaacaacaacaaca-c--caacaaTCTTGAGAAGCTCTCCACCGAA 777
|||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 721 TCCGACAACAACCTTAACAACAACAACAACATCAACAATCTCGAGAAGCTCTCCACCGAA 780
Query 778 TATTCCGGCGACGGCAGCACAACAACAACCACCACAAATAGTAACTCTGACGTTACCATA 837
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 781 TATTCCGGCGACGGCAGCACAACAACAACGACCACAAACAGTAACTCTGACGTTACCATT 840
Query 838 GCTTTAGCCAATCAAAACATATATCGTCCAATGCCTTATGGCACAAGCAACAACACATCG 897
||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 841 GCTCTAGCCAATCAAAACATATATCGTCCAATGCCTTACGACACAAGCAACAACACATTG 900
Query 898 ATAATCTCTACGAGTAATCA--A-GACGATGATGAAACTGCCATTGTTGACGATCTTCAA 954
||| |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 901 ATAGTCTCTACGAGAAATCATCAAGACGATGATGAAACTGCCATTGTTGACGATCTTCAA 960
Query 955 AGACTAGTTAACTACCAAATATCAGATGGAG 985
|||||||||||||||||||||||||||||||
Sbjct 961 AGACTAGTTAACTACCAAATATCAGATGGAG 991
Score = 505 bits (273), Expect = 5e-142
Identities = 293/303 (97%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 988 CTAACGCCTCAAACGCAAGCGGCGTTAGCTATGAACATGATTCCTGCAGGAACGATTCCA 1047
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 CTAATGCCTCAAACTCAAGCGGCGTTAGCTATGAACATGATTCCTGCAGGAACGATTCCA 1164
Query 1048 AACAATGCTTTGTGGGACATGTGGAATCCAATAGTACCAGATGGAAACAGAGATCATTAT 1107
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1165 AACAATGCTTTGTGGGATATGTGGAATCCAATAGTACCAGATGGAAACAGAGATCACTAT 1224
Query 1108 ACTAATATTCCTTTTAAGTAATTTAACTAGATCATGATTATTATCAATTACAATAATTAT 1167
|||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||
Sbjct 1225 ACTAATATTCCTTTTAAGTAATTTAATTAGATCATGATTATTATCCATGACAATAATTAT 1284
Query 1168 TAATGCTGCTTTGCCATATTTTCATACTCGTTATATATTGATATAGCGATAGACAATGAT 1227
||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 1285 TAATGCTGCTTTGCCATATTTTCATACTCCTTATATATTGTTATGGCGATAGACAATGAT 1344
Query 1228 TGATTACTGCGAGTTTATGTAATGGAACTGATTCTCAACATATATAGTCAATTAAGTAGT 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 TGATTACTGCGAGTTTATGTAATGGAACTGATTCTCAACATATATAGTCAATTAAGTAGT 1404
Query 1288 TTT 1290
|||
Sbjct 1405 TTT 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63453488880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5