BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484164
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02510.1 | Symbols: | NADH dehydrogenase (ubiquinone)s | ch... 621 2e-177
AT1G14450.1 | Symbols: | NADH dehydrogenase (ubiquinone)s | ch... 244 4e-64
> AT2G02510.1 | Symbols: | NADH dehydrogenase (ubiquinone)s |
chr2:673305-674740 FORWARD LENGTH=506
Length=506
Score = 621 bits (336), Expect = 2e-177
Identities = 410/444 (92%), Gaps = 11/444 (2%)
Strand=Plus/Plus
Query 1 ATCGACGAAGACCGGAGAAAATGGCGAAACCATTGGGATCTACCGGAGAATTTTTCCGGC 60
||||| ||||||||||||||||||||||||| |||||| | ||||| |||||||||||||
Sbjct 14 ATCGAAGAAGACCGGAGAAAATGGCGAAACCGTTGGGAACAACCGGTGAATTTTTCCGGC 73
Query 61 GAAGAGATGAATGGAGGAAGCATCCGATGCTATCGAATCAAATGAGACACGCACTTCCAG 120
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 GAAGGGATGAGTGGAGGAAGCATCCGATGCTATCGAATCAAATGAGACACGCACTTCCAG 133
Query 121 GTCTCGGAATCGGTGTTGCTGCTTTCTGCGTTTATCTCGTCGGTGAACAGATCTATAGCA 180
|| ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 134 GTATCGGAATCGGTGTTGGTGCCTTCTGCGTTTACCTCGTCGGTGAACAGATCTATAGCA 193
Query 181 AACTCATGGCTCCTTCTTCTCAATCATCGCATCAGAAACAACCTGCTCCGTCTCACTGAG 240
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 194 AACTCATGGCTCCTTCTTCTCAATCATCGCATCAGAAACAACCCGCTCCATCTCACTGAG 253
Query 241 AGAATCAATTAGATTATTTCGATGATGAAA-CCGTGGCGGATAAAAAGCTGAGGGATTCA 299
||||||| ||||||| |||||||||||||| ||||||| |||||| |||||| |||||||
Sbjct 254 AGAATCA-TTAGATTGTTTCGATGATGAAAACCGTGGCAGATAAAGAGCTGATGGATTCA 312
Query 300 CAATTTGCCGTGTTTTT-----CTTGGATTGTCTCACTAAGCTGTGAATGAAAGACAAAG 354
|||||||| || ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 313 CAATTTGCTGTTTTTTTTGTTTCTTGGATTGTCTCAATAAGCTGTGAATGAAAGACAAAG 372
Query 355 ACTTTGATCTCTCTGTTGAATGTTATAATCTTGTATGACAGTTTCCAATA--TGGTTTCG 412
||| |||||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 373 ACTCTGATCTCTATGTTGAATGTTATAATCTTGTATGACAGTTTCCAGTACATGGTTTCG 432
Query 413 TTATGTG-TTGTCTTTGCTTAATA 435
||||||| || |||||||||||||
Sbjct 433 TTATGTGATT-TCTTTGCTTAATA 455
> AT1G14450.1 | Symbols: | NADH dehydrogenase (ubiquinone)s |
chr1:4946218-4947576 REVERSE LENGTH=535
Length=535
Score = 244 bits (132), Expect = 4e-64
Identities = 210/247 (85%), Gaps = 8/247 (3%)
Strand=Plus/Plus
Query 6 CGAAGACCGGAGAAAATGGCGAAACCATTGGGATCTACCGGAGAATTTTTCCGGCGAAGA 65
|||| ||| |||||||||||||| || |||||| | ||||| ||||||||||||||||||
Sbjct 4 CGAATACCTGAGAAAATGGCGAAGCCTTTGGGAACAACCGGCGAATTTTTCCGGCGAAGA 63
Query 66 GATGAATGGAGGAAGCATCCGATGCTATCGAATCAAATGAGACACGCACTTCCAGGTCTC 125
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct 64 GATGAATGGAGGAAGCATCCGATGCTTTCGAATCAAATGAGACACGCTCTTCCCGGACTT 123
Query 126 GGAATCGGTGTTGCTGCTTTCTGCGTTTATCTCGTCGGTGAACAGATCTATAGCAAA-CT 184
|||||||| || || || ||||||||||||||||||||||| |||||||| | |||| ||
Sbjct 124 GGAATCGGCGTCGCCGCCTTCTGCGTTTATCTCGTCGGTGAGCAGATCTACAACAAAGCT 183
Query 185 CATGGCTCCTTCTTC-TCAA-TCATCGC-ATCAGAAACA-ACCTGCTCCGTCTCACTGA- 239
|||||||||| ||| ||| | | | ||| |||| || ||||||||||||||||
Sbjct 184 T-TGGCTCCTTCCAAATCATCTCACCACCACCAGGAACAGAC-TGCTCCGTCTCACTGAA 241
Query 240 GAGAATC 246
||| |||
Sbjct 242 GAGCATC 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20660044839
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5