BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484166
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02540.1 | Symbols: ATHB21, ZFHD4, HB21, ZHD3 | homeobox pro... 1474 0.0
AT1G14440.1 | Symbols: AtHB31, HB31, ZHD4 | homeobox protein 31... 279 3e-74
> AT2G02540.1 | Symbols: ATHB21, ZFHD4, HB21, ZHD3 | homeobox protein
21 | chr2:683647-685309 FORWARD LENGTH=1205
Length=1205
Score = 1474 bits (798), Expect = 0.0
Identities = 958/1031 (93%), Gaps = 27/1031 (3%)
Strand=Plus/Plus
Query 4 TTATTCTCAAGAAAAGTTTCATTTTAAGATAAAGTTTGCTGCTTTTTCTGGTTGTTAGAT 63
|||||||||||||| |||||||||| ||||||||||||||||| |||||||||| | |||
Sbjct 128 TTATTCTCAAGAAAGGTTTCATTTTGAGATAAAGTTTGCTGCTCTTTCTGGTTG-TGGAT 186
Query 64 AGATCAAGAGAATGGAGATTGCAAGTCAAGATGATCCTATTCCAATAAACACTAGTTACG 123
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 187 AGATCAAAAGAATGGAGATTGCAAGTCAAGAAGATCCTATTCCAATAAACACTAGTTATG 246
Query 124 GTAATAGTGGTGGTGGGCATGGGAACATGATCCATCATCTTCATCATCATCATGCCAATT 183
|||||||||| |||||||||||||||||| | | | |||||||||||||||||||
Sbjct 247 GTAATAGTGGAGGTGGGCATGGGAACATG----A--A-C--CATCATCATCATGCCAATT 297
Query 184 CTGCACCATCATCTCTCAACATGACTACTTCAAACCCACTACTAGTCTCCTCAAATGGTA 243
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 298 CTGCACCATCATCTCTCAACATTACTACTTCAAACCCACTACTAGTCTCCTCAAATAGTA 357
Query 244 ATGGTCTTGGCAAAAATCATGAACATTCTCATCATCATCATGTGGGTTACAACATCATGG 303
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGGTCTTGGTAAAAATCATGATCATTCTCATCATCATCATGTGGGTTACAACATCATGG 417
Query 304 TCAGCAACAACAACATCAAGAAAGAGAAGCCTGTGGTGATCAAGTACAAGGAATGCCTAA 363
| || |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 418 T----TAC--CAACATCAAGAAAGAGAAGCCTGTGGTGATAAAGTACAAGGAATGCCTAA 471
Query 364 AGAATCATGCAGCTACCATGGGAGGCAATGCCATTGATGGTTGTGGAGAGTTTATGCCAA 423
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 AGAACCATGCAGCTACCATGGGAGGCAATGCCATTGATGGTTGTGGAGAGTTTATGCCAA 531
Query 424 GTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGTTCAGCTTGCAACTGCCATAGAAACT 483
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 532 GTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGCTCAGTTTGCAACTGCCATAGAAACT 591
Query 484 TCCATAGAAGAGAAATTGAAGGTGAACAAAAAACCTTCTTTTCCCCTTACCTCAACCACC 543
| ||||||||||||| ||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 592 TTCATAGAAGAGAAACCGAAGGTGAAGAGAAAACATTCTTTTCCCCTTACCTCAACCACC 651
Query 544 ACCAACTACCTCCGCCGCAGAGAAAACTCATGTTCCACCACAAGATGATCAAATCACCAT 603
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 ACCAACCACCTCCGCAGCAGAGAAAACTCATGTTCCACCACAAGATGATCAAATCACCAT 711
Query 604 TACCACAACAAATGATAATGCC-AGTTGGCGTTACAACCGCTGGATCCAACTCAGAGTCA 662
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 712 TACCACAACAAATGATAATGCCTA-TTGGCGTTACAACCGCTGGATCCAACTCAGAGTCA 770
Query 663 GAGGATCTTATGGAGGAAGAGGGCGGAGGAAGCTTGACATTCCGGCAaccaccaccacca 722
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 771 GAGGATCTTATGGAGGAAGAAGGCGGAGGAAGCTTGACATTCCGGCAGCCACCACCACCA 830
Query 723 ccaccaTCGTATAGTTACGGACATAATCAGAAGAAGAGGTTTAGGACAAAGTTTACTCAA 782
||| || |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 831 CCATCACCGTATAGTTACGGACATAATCAGAAGAAAAGGTTTAGGACAAAGTTTACACAA 890
Query 783 GAGCAAAAGGAAAAGATGATGAGTTTTGCGGAGAGAGTTAGTTGGAAGATTCAGAGACAA 842
||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct 891 GAGCAAAAGGAGAAGATGATTAGTTTTGCGGAAAGAGTTGGTTGGAAGATTCAGAGACAA 950
Query 843 GAGGAATCTGTTGTTCAACAGCTTTGTCAAGAGATCGGAATTAGGAGAAGAGTTCTTAAA 902
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 951 GAGGAATCTGTTGTTCAACAGCTTTGTCAAGAGATTGGAATTAGGAGAAGAGTTCTTAAA 1010
Query 903 GTTTGGATGCacaacaacaaacacaatctatccaagaagagcaacaacaacaacgttaat 962
||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |
Sbjct 1011 GTTTGGATGCACAACAACAAACAAAATCTCTCCAAGAAGAGCAACAAC------GTTAGT 1064
Query 963 aacaaTGTTGAGCTTTCTGCTGGTAATAATAACGCTACTACTGAAAATTTTGCTTCTATT 1022
|||||||| || ||||||||||||||||| || | |||||||||| ||||||||| |
Sbjct 1065 AACAATGTCGACCTTTCTGCTGGTAATAACGACA-T--TACTGAAAATCTTGCTTCTACT 1121
Query 1023 AATCCTTAGTT 1033
|||||||||||
Sbjct 1122 AATCCTTAGTT 1132
> AT1G14440.1 | Symbols: AtHB31, HB31, ZHD4 | homeobox protein
31 | chr1:4938824-4940903 REVERSE LENGTH=1577
Length=1577
Score = 279 bits (151), Expect = 3e-74
Identities = 632/849 (74%), Gaps = 93/849 (11%)
Strand=Plus/Plus
Query 130 GTGGTGGTGGGCATGGGAACATGATCCATCATCTTCATCATCAT-CATGCCAATTCTGCA 188
|||||||| | ||||| ||||||||||||||| | |||||||| | ||| ||||||||
Sbjct 448 GTGGTGGTAGTCATGGTCACATGATCCATCATCATGATCATCATGC-TGCTAATTCTGCT 506
Query 189 CCAT-CATCTCTCAAC-ATGAC--TACT--TCAAACCCA-CTACTAGTCTCC-TCAAATG 240
|| | || ||| |||| | || |||| || || ||| || | | | || | | |||
Sbjct 507 CC-TCCAACTCACAACAACAACAATACTACTC-AA-CCACCT-CCAAT-GCCGTTACATG 561
Query 241 GTAATGGTCTTGGCAAAAATCATGAACATTCTCATCATCATCATGTGGGTTACAACATCA 300
||||||||| |||||| ||| |||| || |||||||||||| | | | |||||
Sbjct 562 GTAATGGTCATGGCAACAATTATGATCA---TCATCATCATCA----AGAT-CCTCATCA 613
Query 301 TGGTCAGCAACAACAAC-ATCAAGAAAGAGAAGCCTGTGGTGATCAAGTACAAGGAATGC 359
| || | ||||| | ||| | | ||||||| | |||| ||||||||||| ||
Sbjct 614 T-GTTGGTTACAAC-GCTATC-A-TCA-AGAAGCC--T-ATGATAAAGTACAAGGAGTGT 665
Query 360 CTAAAGAATCATGCAGCTA-CCATGGGAGGCAATGCCATTGATGGTTGTGGAGAGTTTAT 418
|| ||||| |||||||| | | |||||||||||||| | |||||| ||||||||||||||
Sbjct 666 CTCAAGAACCATGCAGC-AGCTATGGGAGGCAATGCTACTGATGGGTGTGGAGAGTTTAT 724
Query 419 GCCAAGTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGTTCAGCTTGCAACTGCCATAG 478
||||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||| ||
Sbjct 725 GCCAAGTGGTGAAGATGGCTCCATTGAGGCTCTCACTTGCTCAGCTTGCAATTGCCACAG 784
Query 479 AAACTTCCATAGAAGAGAAATTGAAGGTGAACAAAAA---ACCTTCTTTTCCCCTTACCT 535
||||||||||||| |||| | ||||| |||| | ||| | | ||||||||||
Sbjct 785 GAACTTCCATAGAAAAGAAGTGGAAGGCGAACTCGCAGCCACCGCCATGTCCCCTTACC- 843
Query 536 CAACCACCACCAACTACCTCCGCCGCAGAGAAAACTCATGTTCCACCAC-AAGATGATCA 594
| ||| |||| || || | ||| | | || |||||| || ||||| || | |||||
Sbjct 844 -A-CCAACACC--CT-CCACA-CCG-A-A-AA--CTCATGCTCAACCACCAAAA-GATCA 891
Query 595 AATCACC-ATTACCACAACAAATGATAATGCC-AGTTGGCGT-T--A-CAACCG---C-T 644
|||| | || ||||| |||||||| ||||| | |||| || | | | |||| | |
Sbjct 892 GATCAGCTATG-CCACACCAAATGATCATGCCCA-TTGGAGTCTCTAACTACCGGTACAT 949
Query 645 GGATC-CAACTCAGAGTCAGAGGATCTT-ATGGAGGAAGAGGGCGGAGGAAGCTTGACAT 702
| || |||||| ||||| ||||| ||| ||||||||||| |||| | | | | |||
Sbjct 950 GCATAACAACTCCGAGTCCGAGGA-CTTTATGGAGGAAGATGGCGTAACCACC--G-CAT 1005
Query 703 TCCGGCAaccaccaccaccaccaccaTCGTATAGTTACGGACATAATCAGAAGAAGAGGT 762
| | | | | |||| | ||| | | | | || || |||||||||||||
Sbjct 1006 -CTAG-ATCG-CTACCA--A--ACC-T-GCC-A-T-ACA-AC-----CAGAAGAAGAGGT 1047
Query 763 TTAGGACAAAGTTTACTCAAGAGCAAAAGGAAAAGATGATGAGTTTTGCGGAGAGAGTTA 822
| ||||||||||| || | || || ||||| |||||| | |||||||| |||| ||||
Sbjct 1048 TCAGGACAAAGTTCACGCCGGAACAGAAGGAGAAGATGCTTAGTTTTGCTGAGAAAGTTG 1107
Query 823 GTTGGAAGATTCAGAGACAAGAGGAATCTGTTGTTCAACAGCTTT-GTCAAGAGATCGGA 881
| ||||| || || || ||||| || | |||||||||| || ||| || ||||||| |||
Sbjct 1108 GGTGGAAAATACAAAGGCAAGAAGATTGTGTTGTTCAA-AGGTTTTGTGAAGAGATTGGA 1166
Query 882 ATTAGGAGAAGAGTTCTTAAAGTTTGGATGCacaacaacaa-a-cacaatctatccaaga 939
| | ||||||||| ||||| |||||||||||||||||||| | | || | | |||||||
Sbjct 1167 GTGAAGAGAAGAGTGCTTAAGGTTTGGATGCACAACAACAAGATC-CATT-TCTCCAAGA 1224
Query 940 agagcaaca 948
||| |||||
Sbjct 1225 AGAACAACA 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5