BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484176
Length=1622
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02710.1 | Symbols: PLP, PLPB | PAS/LOV protein B | chr2:758... 1818 0.0
> AT2G02710.1 | Symbols: PLP, PLPB | PAS/LOV protein B | chr2:758693-760871
REVERSE LENGTH=1582
Length=1582
Score = 1818 bits (984), Expect = 0.0
Identities = 1322/1474 (90%), Gaps = 68/1474 (5%)
Strand=Plus/Plus
Query 198 cttttttcCCATGAAAACATTTTCTTGATTCCCGATTTCAAATTTC-CATACCTGGGTTT 256
||||||| | |||||||||||||||||||||| ||||||||||||| || | |||| |||
Sbjct 79 CTTTTTTTCAATGAAAACATTTTCTTGATTCCTGATTTCAAATTTCACA-ATCTGGATTT 137
Query 257 GGTGTTTCGGATTCACTTTGAAGAAAAAGTTTTTCAATTTCGCCTCAAAACCCACATGGG 316
|||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 138 CGTGTTTCGAATTCACTTTGAAGAAAAAGTTTCTCAATTTCGCCTGAAAACCCACATGGG 197
Query 317 ATTGGCACTAAACACTGGACTGACAACAAG-AGCAAGAGTAAT-AGTCATCGAGTGTTTA 374
||||| |||||||||| ||||||||| ||| || ||||||||| | ||||||||||||||
Sbjct 198 ATTGGAACTAAACACTAGACTGACAAGAAGAAG-AAGAGTAATCA-TCATCGAGTGTTTA 255
Query 375 TTACGATTATGTCC-T--C--AA----C-GAA--A-TCTT--C---------AGAAGAAG 410
|||||||||||||| | | || | ||| | | || | ||||||||
Sbjct 256 TTACGATTATGTCCTTAACGAAATCTTCAGAATCAGTTTTCACTGAAGAAGAAGAAGAAG 315
Query 411 ATTCCTTTAACGGTCGATACAC-TCTATGGATCACAGAAGCTTTAGAAGAGCTTCCTCAC 469
||||||||| |||||||||||| | ||||||||| |||||| ||||| |||||||| |||
Sbjct 316 ATTCCTTTAGCGGTCGATACACGT-TATGGATCAAAGAAGCATTAGAGGAGCTTCCACAC 374
Query 470 AATTTCACAATCACCGACCCGTTTATTTCGGGTCACCCGATTGTTTTCGCGAGCTTAGGG 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 AATTTCACAATCACCGACCCGTTTATTTCGGGTCACCCGATTGTTTTCGCGAGCTTAGGG 434
Query 530 TTTTTGAAAATGACTGGGTATTCACGAGAAGAAGTCATCGGAAGAAACGGGAAAGTTTTT 589
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 435 TTTTTGAAAATGACTGGCTATTCACGAGAAGAAGTGATCGGAAGAAACGGTAAAGTTTTT 494
Query 590 CAAGGACCTAAGACTAATCGAAGATCGATCATGGAGATTCGTGAAGCTATTCGTGAAGAG 649
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 495 CAAGGACCTAAGACTAATCGAAGATCGATCATGGAGATTCGTGAAGCGATTCGTGAAGAG 554
Query 650 AGATCTGT-TATGGTTAGCTTGTTGAATTATCGTAAATCTGGATCTCCGTTTTGGATGTT 708
||||| || | || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 555 AGATCAGTGCA-AGTGAGCTTGTTGAATTATCGTAAATCTGGGTCTCCGTTTTGGATGTT 613
Query 709 GTTTCATATGAGTCCTGTTTTTGGGAGAGATGATGGTAAAGTCATCAATTTTGTGGCGGT 768
|||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 614 GTTTCATATGTGTCCTGTTTTTGGGAAAGATGATGGTAAAGTCACCAATTTTGTGGCGGT 673
Query 769 TCAGGTCCCGATTTCGGGACAAG-A-A-CATC-G--G-A----AG----CTCGGAGATAT 813
|||||||||||||||||||| || | | |||| | | | || |||||||| |
Sbjct 674 TCAGGTCCCGATTTCGGGACGAGAACATCATCGGAAGAAGTTGAGAAATGTCGGAGATTT 733
Query 814 GTCGTCGGATCA-TTCTGAGTTGGTGTTTGGTTCTTGTCGAAGAGAGGTTTGTTTTGGTA 872
|||||||||| | |||| | ||||||||||||||||||||||||||||||||||
Sbjct 734 GTCGTCGGAT-ACTTCT---CCGACATTTGGTTCTTGTCGAAGAGAGGTTTGTTTTGGTA 789
Query 873 GTTTCGTGCATCAGAAACAAGCTTCACCAGTGGAATGTGATGATGA-G--CAAGGATTAG 929
||||||| |||| | | ||||| ||||||||||||||||||||| | ||||||||||
Sbjct 790 ATTTCGTGTGTCAGGATCGAGCTTTACCAGTGGAATGTGATGATGATGAACAAGGATTAG 849
Query 930 AGGATTGGGAACACTGTGAAGCGAGTGAGTCTGAGAAGCTGAAAGCTGTGGAAGCAATTA 989
||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| ||||
Sbjct 850 AGGATTGGGAACAGTGTGAAGCGAGTGAGTCCGAGAAGCTGAAAGCTACGGAAGCTATTA 909
Query 990 ACAATGTGTTATCTATTTTAACGCGTTACAGCAAGTTGAGTGGTAGATTAGTCTGCGGAA 1049
|||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||
Sbjct 910 ACAATGTGTTATCTATCTTAGTGCATTACAGCGAGTTGAGTGGTAGATTAGTCTGCGGAA 969
Query 1050 AGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGTTCGTCGTTGGTTATTTCTCTCGGTA 1109
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 970 AGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGCTCGTCGTTAGTTATTTCTCTCGGTA 1029
Query 1110 GAATCAAACAAAGTTTCGTATTAACCAATCCATGCTTACCCGACATGCCTATCGTTTATG 1169
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1030 GAATCAAACAAAGTTTCGTATTAACCAATCCATGCTTACCAGACATGCCTATCATTTATG 1089
Query 1170 CGAGTGATTCCTTTTTGACACTGACCGGTTACAAGAGACAGGAAGTGTTGGGTCAAAACT 1229
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1090 CGAGTGATGCCTTTTTGACACTGACCGGTTACAAGAGACAGGAAGTGTTGGGACAAAACT 1149
Query 1230 GCAGATTTCTGAGTGGGGTTGATACCGATTCCTCAGTACTATACGAGATGAAGGAGTGCA 1289
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1150 GTAGATTTCTGAGTGGGGTTGATACTGATTCCTCAGTACTATACGAGATGAAGGAATGCA 1209
Query 1290 TCTTAAAGGGACAATCATGCACAGTTCAAATACTAAATTACAGTAACAGAAAAGATAAGA 1349
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1210 TCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAGTAACAGAAAAGATAAGA 1269
Query 1350 GCTCATTCTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGACAGCAT 1409
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 GCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGACAGCAT 1329
Query 1410 ATTTTGTGGGTGTTCAGGTGGAAGGAAGTTGTAGAAATACTGAAAGTAAAGAGCTGAGAC 1469
|||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||
Sbjct 1330 ATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAAATTAAAGAGCTGAGAC 1389
Query 1470 CAGAGACAAGGCAACTGAGTGTGGTCGGTGCGGTTAGAGTTGCGGTTAGGAGCTCATTGA 1529
||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1390 CAGAGACGAGACAACTGAGTGTTGTCGGTGCGGTTAGAGTTGCGGTTAGAAGCTCATTGA 1449
Query 1530 TGGTAACATGCTAATGTACGCCCGAAAGAAAATGTC-TCTTAGAAAGAAAAGTAGAAAAG 1588
|||| |||||||||| |||||| ||||||||||| | || || | | |||| |
Sbjct 1450 TGGTGACATGCTAATATACGCCAGAAAGAAAATG-CGTC---GACTTA---G-AGAA--G 1499
Query 1589 AGTATGATGTGAATTGGATATACATCTTTACTAT 1622
||| | | |||||||||| |||||||||||||||
Sbjct 1500 AGTCTAAAGTGAATTGGACATACATCTTTACTAT 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80120069820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5