BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484180
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02740.1 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding tra... 1393 0.0
AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding tran... 643 0.0
AT2G02750.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 128 1e-28
> AT2G02740.1 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding transcriptional
regulator | chr2:769344-771235 FORWARD LENGTH=1094
Length=1094
Score = 1393 bits (754), Expect = 0.0
Identities = 810/837 (97%), Gaps = 4/837 (0%)
Strand=Plus/Plus
Query 1 GAAGCATTGAGAGGGAAAAGAAAAACGATGACGCAGCTCTTATCTTCTCCTCCAATGGCG 60
||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 19 GAAGCATTGAGAGTGAAAAGAAAAACAATGTCGCAGCTGTTATCTTCTCCTCCAATGGCG 78
Query 61 GTTTTCTCCAAACCCTTCAGAAACCATAAGTTTTCAGATGCTCGTTTTCCCTCTTCTCAC 120
|||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 79 GTTTTCTCCAAAACCTTCATAAACCATAAGTTTTCAGATGCTCGTTTTCTCTCTTCTCAC 138
Query 121 TCAATTCTCACCTCCGGT-GATTTCGCCGGAAAAATCGTTCCTGTAAAACCGACGGCAAG 179
|||||||||||||||||| || |||||||||||||| ||||| ||||||||||||| ||
Sbjct 139 TCAATTCTCACCTCCGGTGGA-TTCGCCGGAAAAATTATTCCTTTAAAACCGACGGCGAG 197
Query 180 GTTGAAATTAACGGTGAAGTCTCGAC-AAGATGATTACTTTGAGAAGCAGAGGTTTGGTG 238
|||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||
Sbjct 198 GTTGAAATTAACGGTGAAGTCTCGACAAAG-TGATTACTTTGAGAAACAGAGGTTTGGTG 256
Query 239 ACTCGTCTTCTTCGCAAAACGCTGAAGGATCTTCTCCAAGATTTTACGTGGGTCATTCGA 298
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 257 ACTCGTCTTCTTCGCAAAACGCTGAAGTATCTTCTCCTAGATTTTACGTGGGTCATTCGA 316
Query 299 TTTACAAAGGGAAAGCTGCTCTTACGATAGAGCCACGAGCACCAGAGTTTGTGGCTTTGG 358
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 317 TTTACAAAGGGAAAGCTGCTCTTACGATAGAACCACGAGCACCAGAGTTTGTGGCTTTGG 376
Query 359 AATCTGGTGCGTTCAAGCTGACAAAGGAAGGTTTTTTGTTGCTCCAGTTTGCTCCTGCAG 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 377 AATCTGGTGCGTTCAAGCTGACAAAGGAAGGTTTTTTGTTGCTCCAATTTGCTCCTGCAG 436
Query 419 CTGGTGTTCGTCAATACGATTGGAGTAGGAAGCAGGTCTTCTCGTTGTCGGTTACAGAAA 478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 CTGGTGTTCGTCAATATGATTGGAGTAGGAAGCAGGTCTTCTCGTTGTCGGTTACAGAAA 496
Query 479 TCGGTAATCTAGTTAGCCTTGGGCCGAGGGAATCATGTGAATTCTTCCATGATCCATTCA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TCGGTAATCTAGTTAGCCTTGGGCCGAGGGAATCATGTGAATTCTTCCATGATCCATTCA 556
Query 539 AGGGAAAAGGTAGTGATGAAGGTAAAGTGAGGAAAGTGTTGAAAGTTGAGCCCCTCCCAG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 557 AGGGAAAAGGTAGTGATGAAGGTAAAGTGAGGAAAGTGTTGAAAGTTGAGCCGCTCCCAG 616
Query 599 ATGGTTCTGGCCGCTTCTTTAACCTGAGTGTTCAAAACAAGCTCTTGAATGTAGATGAGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 ATGGTTCTGGCCGCTTCTTTAACCTGAGTGTTCAAAACAAGCTCTTGAATGTAGATGAGA 676
Query 659 GTGTATACATACCAATCACTAAAGCAGAGTTTGCTGTTCTTATCTCTGCTTTCAACTTCA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GTGTATACATACCAATCACTAAAGCAGAGTTTGCTGTTCTTATCTCTGCTTTCAACTTCG 736
Query 719 TCTTGCCGCACCTTATAGGCTGGAGTGCATTTGCTAACTCCATCAAACCAGAAGACGCTA 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 737 TCTTGCCGCACCTTATAGGCTGGAGTGCATTTGCTAACTCCATCAAACCAGAAGACTCTA 796
Query 779 ACCGCCTTAACAATGCATCGCCCAAGTATGGAGGAGACTATGAATGGAGTAGATGAT 835
|||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 797 ACCGCCTTAACAATGCTTCGCCTAAGTATGGAGGAGACTACGAATGGAGTAGATGAT 853
Score = 270 bits (146), Expect = 2e-71
Identities = 183/200 (92%), Gaps = 5/200 (3%)
Strand=Plus/Plus
Query 836 CATCTTTTTGTTCTTAAAAAATCAATGAGTCACCAAGAGCTGTTCAAGACACAGAACGGA 895
|||||||||||| || ||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 898 CATCTTTTTGTTGTT-GCAAATCAATGAGTCACCAAGAGCTGTTCGAGATAGAGAACGGA 956
Query 896 AAGAAAAGTAGCAGCAGAGACTGAAGTAGCGTTTAGACCAAATGTG-ATGTGTTGTTGTG 954
|||||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 957 AAGAAAAGCAGCAGCAGAGACTGAAGTA--GTTTAGACCAAATG-GAATGTGTTGTTGTG 1013
Query 955 TAGGAAATAACTCATATTTTGTATTAGACAATCTGTATTCATTCATGAGAAATCAATTAC 1014
|||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 1014 TAGGAAATAACTTATATTTTGTGTTAGACAATCTGTATTCATTCAAAAGCAATCAATTAC 1073
Query 1015 AATTTTGCTAATACAAGAAT 1034
||||||||||||||||||||
Sbjct 1074 AATTTTGCTAATACAAGAAT 1093
> AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding transcriptional
regulator | chr1:4929123-4930904 REVERSE LENGTH=1115
Length=1115
Score = 643 bits (348), Expect = 0.0
Identities = 563/664 (85%), Gaps = 25/664 (4%)
Strand=Plus/Plus
Query 191 CGGTGAAGTCTCGACAAGA-TGATTACTTTGAGAAGCAGAGGTTTGGTGACTCGTCTTCT 249
|||| |||||||| | ||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct 243 CGGTTAAGTCTCG-CCAGACGGATTACTTCGAGAAGCAGAGGTTCGGTGACTCTTCTTCT 301
Query 250 TC-GC-AAAAC-GCTGAAGGATCT-TCTCCAAGATTTTACGTGGGTCATTCGATTTACAA 305
|| | | | |||||||||| | || | ||||||||||||||||||||||| |||||
Sbjct 302 TCTCCTTCACCTGCTGAAGGAT-TGCCTGCTAGATTTTACGTGGGTCATTCGATATACAA 360
Query 306 AGGGAAAGCTGCTCTT-ACGA-TAGAGCCACGAGCACCAGAGTTTGTGGCTTTGGAATCT 363
|||||||||||| || || | | || ||| |||||||||||||||||||||| || |||
Sbjct 361 AGGGAAAGCTGC-GTTAAC-AGTGGACCCAAGAGCACCAGAGTTTGTGGCTTTAGACTCT 418
Query 364 GGTGCGTTCAAGCTGACAAAGGAAGGTTTTTTGTTGCTCCAGTTTGCTCCTGCAGCTGGT 423
|| || |||||| || |||| || ||||| || |||||||||||||||||| | ||||||
Sbjct 419 GGAGCTTTCAAGTTGTCAAAAGATGGTTTCTTATTGCTCCAGTTTGCTCCTTCTGCTGGT 478
Query 424 GTTCGTCAATACGATTGGAGTAGGAAGCAGGTCTTCTCGTTGTCGGTTACAGAAATCGGT 483
|| || ||||| |||||||| | ||| ||||| ||||| ||||| ||||||||||| ||
Sbjct 479 GTACGACAATATGATTGGAGCAAGAAACAGGTGTTCTCATTGTCTGTTACAGAAATTGG- 537
Query 484 AA-TCTAGTTAGCCTTGGGCCGAGGGAATCATGTGAATTCTTCCATGATCCATTCAAGGG 542
|| |||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 538 AACTCTAGTTAGCCTAGGCCCGAGGGAATCTTGTGAATTCTTCCATGATCCATTCAAGGG 597
Query 543 AAAAGGTAGTGATGAAGGTAAAGTGAGGAAAGTGTTGAAAGTTGAGCCCCTCCCAGATGG 602
||| |||||||| || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 598 GAAA---AGTGATGAGGGAAAAGTAAGGAAAGTGTTGAAAGTTGAGCCTCTCCCAGATGG 654
Query 603 TTCTGGCCGCTTCTTTAACCTGAGTGTTCAAAACAAGCTCT-TGAATGTAGATGAGAGTG 661
|||||| | ||||| ||||| ||||||||||||||||| | ||||||| ||||||||
Sbjct 655 TTCTGGTCATTTCTTCAACCTAAGTGTTCAAAACAAGCT-TGTGAATGTGGATGAGAGCA 713
Query 662 TATACATACCAATCACTAAAGCAGAGTTTGCTGTTCTTATCTCTGCTTTCAACTTCATCT 721
| ||||||||||| ||| ||||||||||||||||||||||||||| ||||| || |||
Sbjct 714 TTTACATACCAATTACTCGAGCAGAGTTTGCTGTTCTTATCTCTGCATTCAATTTTGTCT 773
Query 722 TGCCGCACCTTATAGGCTGG-AGTGCATTTGCTAACTCCATCAAACCAGAAGACG-CTAA 779
|||| |||||||||||||| | ||||||||| |||||||||||||||||||| | | ||
Sbjct 774 TGCCTTACCTTATAGGCTGGCA-TGCATTTGCAAACTCCATCAAACCAGAAGA-GAC-AA 830
Query 780 -CCGCCTTAACAATGCATCGCCCAAGTATGGAGGAGACTATGAATGGAGTAGATGATCA- 837
||| | ||||| || ||||| || |||||||||||||||||||||| |||||||| |
Sbjct 831 GCCGTGTGAACAACGCTTCGCCTAACTATGGAGGAGACTATGAATGGAATAGATGATGAA 890
Query 838 TCTT 841
||||
Sbjct 891 TCTT 894
> AT2G02750.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:771151-773540 REVERSE LENGTH=2390
Length=2390
Score = 128 bits (69), Expect = 1e-28
Identities = 79/84 (94%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 951 TGTGTAGGAAATAACTCATATTTTGTATTAGACAATCTGTATTCATTCATGAGAAATCAA 1010
|||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||||
Sbjct 2390 TGTGTAGGAAATAACTTATATTTTGTGTTAGACAATCTGTATTCATTCAAAAGCAATCAA 2331
Query 1011 TTACAATTTTGCTAATACAAGAAT 1034
||||||||||||||||||||||||
Sbjct 2330 TTACAATTTTGCTAATACAAGAAT 2307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50686254323
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5