BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484183
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02760.1 | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating en... 1066 0.0
AT1G14400.1 | Symbols: UBC1, ATUBC1 | ubiquitin carrier protein... 586 1e-166
> AT2G02760.1 | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating
enzyme 2 | chr2:773684-775371 FORWARD LENGTH=934
Length=934
Score = 1066 bits (577), Expect = 0.0
Identities = 709/767 (92%), Gaps = 31/767 (4%)
Strand=Plus/Plus
Query 1 AGATATGTTTTGATTAGATCGAAGTTTCTAGAAGATCACACCACTGCGTGCGTTATACGA 60
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 18 AGATATGTGTTGATTAGATCGAAGCTTCTAGAAGATCACACCACTGCGTGCGTTATACGA 77
Query 61 ACTTC--CA-CA----TC--AT-T-TC-T---TC--T---TTCGAGGATCGTCGAGCTTT 100
||||| || || || | | || | || | |||||||||| |||||||||
Sbjct 78 ACTTCTACATCATTTCTCTTTTCTCTCATCGCTCGGTGAATTCGAGGATCCTCGAGCTTT 137
Query 101 TTGATCGGAGACTTTTATTCTCTCATCATCATCATCGTCGTTTGAATTCCCCGGCCAAGA 160
|||||||||||| | || | || || ||||| |||| |||||||||| ||||| |||
Sbjct 138 TTGATCGGAGAC---T-TT-T-TC-TC-TCATCGTCGTTGTTTGAATTCTCCGGCTGAGA 189
Query 161 GATGCTTGCTTGACGACGAACCTCCACCGATCTTTTGCCTTTTTGCACAACAAGTAAGAG 220
|||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||
Sbjct 190 GATGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAAGTAAGAG 249
Query 221 AAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTCAAGAGGTTGCAGCAAGA 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 AAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTCAAGAGGTTGCAGCAAGA 309
Query 281 CCCACCTGCTGGAATTAGTGGTGCTCCACAAGACAACAATATCATGTTGTGGAATGCTGT 340
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CCCACCTGCAGGAATTAGTGGTGCTCCACAAGACAACAATATCATGTTGTGGAATGCTGT 369
Query 341 TATATTCGGGCCTGATGATACCCCTTGGGATGGAGGTACTTTCAAACTCTCACTGCAGTT 400
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 370 TATATTCGGGCCTGATGATACCCCTTGGGATGGAGGTACTTTCAAATTGTCACTGCAGTT 429
Query 401 TTCGGAAGATTATCCTAATAAGCCACCAACAGTTCGGTTTGTTTCACGGATGTTCCATCC 460
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 430 TTCGGAAGATTATCCAAATAAACCACCAACAGTGCGGTTTGTTTCACGGATGTTCCATCC 489
Query 461 AAATATTTATGCTGATGGGAGTATATGCTTGGACATTCTCCAGAACCAATGGAGTCCAAT 520
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 490 AAACATTTATGCTGATGGGAGTATATGCTTGGACATTCTCCAAAACCAATGGAGTCCAAT 549
Query 521 ATACGATGTCGCGGCTATACTAACCTCCATTCAGTCATTGCTCTGTGATCCTAATCCGAA 580
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 550 ATACGATGTCGCTGCTATACTAACCTCCATTCAGTCATTGCTATGTGATCCTAATCCGAA 609
Query 581 TTCTCCTGCAAATTCGGAAGCGGCACGAATGTTCAGTGAAAGCAAGCGCGAGTACAACAG 640
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 610 TTCTCCTGCAAATTCGGAAGCTGCACGAATGTTCAGTGAAAGCAAGCGCGAGTACAACAG 669
Query 641 AAGAGTCCGCGAGGTTGTCGAACAAAGCTGGACTGCCGACTAGTAATTATATT-TGCTGT 699
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 670 AAGAGTCCGCGAGGTTGTCGAACAAAGCTGGACTGCCGACTAGTAATTATATCAT--TGT 727
Query 700 AGCATTTGTCTTCAAATAACATTAAACCTCGTCTCTTGTGTTTGATT 746
|||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 728 AGCATTTGTCTTCAAATAACATTAAACCTCCTCTCTTGTATCTGATT 774
Score = 167 bits (90), Expect = 2e-40
Identities = 109/118 (92%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 747 CCACtctctttcatgtctttgtgtgtgttttc-aactctgtgatttgtttcttttgatgt 805
||||||||||| |||||||| ||||| ||||| |||||||||||||||| || || ||||
Sbjct 813 CCACTCTCTTTTATGTCTTTCTGTGT-TTTTCAAACTCTGTGATTTGTTGCTCTTCATGT 871
Query 806 ttcttttctatgtattttcGTAACCACATTCATCTTCATAATTATCATATGTATTTCA 863
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 TTTTTTTCTTTGTATTTTCGTAACCACATTCATCTTCATAATTATCATATGTATTTCA 929
> AT1G14400.1 | Symbols: UBC1, ATUBC1 | ubiquitin carrier protein
1 | chr1:4927011-4928690 REVERSE LENGTH=995
Length=995
Score = 586 bits (317), Expect = 1e-166
Identities = 429/484 (89%), Gaps = 3/484 (1%)
Strand=Plus/Plus
Query 202 TTTGCACAACAAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATT 261
||| ||| | ||| || || ||||||||||| ||||| |||||||| || ||||||||||
Sbjct 234 TTTCCACGA-AAG-AA-AGGAGGATGTCGACGCCAGCAAGGAAGAGGTTAATGAGGGATT 290
Query 262 TCAAGAGGTTGCAGCAAGACCCACCTGCTGGAATTAGTGGTGCTCCACAAGACAACAATA 321
|||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |
Sbjct 291 TCAAGAGGTTGCAGCAAGACCCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAACA 350
Query 322 TCATGTTGTGGAATGCTGTTATATTCGGGCCTGATGATACCCCTTGGGATGGAGGTACTT 381
| ||| | ||||||||||| ||||| ||||||||||| || || ||||||||||||||||
Sbjct 351 TTATGCTCTGGAATGCTGTCATATTTGGGCCTGATGACACACCATGGGATGGAGGTACTT 410
Query 382 TCAAACTCTCACTGCAGTTTTCGGAAGATTATCCTAATAAGCCACCAACAGTTCGGTTTG 441
||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||
Sbjct 411 TCAAACTCTCACTGCAGTTCTCTGAAGATTATCCCAATAAACCACCAACAGTTCGGTTTG 470
Query 442 TTTCACGGATGTTCCATCCAAATATTTATGCTGATGGGAGTATATGCTTGGACATTCTCC 501
| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| |
Sbjct 471 TGTCACGGATGTTTCATCCTAATATTTATGCAGATGGGAGTATCTGCTTGGACATTCTAC 530
Query 502 AGAACCAATGGAGTCCAATATACGATGTCGCGGCTATACTAACCTCCATTCAGTCATTGC 561
| ||||| ||||||||||| || ||||| || |||||||| |||||||| ||||| ||||
Sbjct 531 AAAACCAGTGGAGTCCAATCTATGATGTTGCTGCTATACTTACCTCCATCCAGTCCTTGC 590
Query 562 TCTGTGATCCTAATCCGAATTCTCCTGCAAATTCGGAAGCGGCACGAATGTTCAGTGAAA 621
||||||| ||||||||||||||||||||||| |||||||| || || |||| ||| ||||
Sbjct 591 TCTGTGACCCTAATCCGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAA 650
Query 622 GCAAGCGCGAGTACAACAGAAGAGTCCGCGAGGTTGTCGAACAAAGCTGGACTGCCGACT 681
||||||||||||||||||| ||||| || || ||||| || |||||||||||||| ||||
Sbjct 651 GCAAGCGCGAGTACAACAGGAGAGTGCGTGATGTTGTTGAGCAAAGCTGGACTGCTGACT 710
Query 682 AGTA 685
||||
Sbjct 711 AGTA 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5