BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484186
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02800.1 | Symbols: APK2B | protein kinase 2B | chr2:796680-... 2381 0.0
AT1G14370.1 | Symbols: APK2A, PBL2 | protein kinase 2A | chr1:4... 1066 0.0
> AT2G02800.1 | Symbols: APK2B | protein kinase 2B | chr2:796680-799443
REVERSE LENGTH=1683
Length=1683
Score = 2381 bits (1289), Expect = 0.0
Identities = 1413/1472 (96%), Gaps = 11/1472 (1%)
Strand=Plus/Plus
Query 1 AAAGAAAAGCTCGTTGGCTTTGTT-CTTTAGAATCTGTTGATTG-TTTATCGAGTGAGAA 58
||| |||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 135 AAAAAAAAGCTCGTTGGCTTTGTTCCTTT-GAATCTGTTGATTGTTTTATCGAGTGAGAA 193
Query 59 ATGGGTAATTGCTTAGATTCATCAGCTAAAGTGGATAGTAGCAGCCATAGTCCTCATGCT 118
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 194 ATGGGTAATTGCTTAGATTCATCAGCTAAAGTGGATAGTAGCAGCCACAGTCCTCATGCT 253
Query 119 AATTCTGCTTCGTTGAGCTCAAGAGTTTCAAGCAAGACAAGTCGTTCCACAGTTCCTTCA 178
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 254 AATTCTGCTTCATTGAGCTCAAGAGTTTCTAGCAAGACAAGTCGTTCCACAGTTCCTTCA 313
Query 179 AGCTTAAGCATAAATTCTTACAGCAGTGTGGAGTCTTTACCTACACCAAGAACAGAAGGA 238
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 314 AGCTTAAGCATAAATTCTTACAGCAGTGTTGAGTCTTTACCTACACCAAGAACAGAAGGA 373
Query 239 GAGATTTTGTCATCACCAAATCTTAAAGCTTTCACCTTTAACGAGCTCAAGAACGCTACT 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GAGATTTTGTCATCACCAAATCTTAAAGCTTTCACCTTTAACGAGCTCAAGAACGCTACG 433
Query 299 AGGAA-TTTCCGACCCGATAGTCTTTTAGGTGAAGGAGGTTTTGGTTATGTGTTTAAAGG 357
||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 434 AGGAACTTT-CGACCCGATAGTCTTTTAGGTGAAGGAGGTTTTGGCTATGTGTTTAAAGG 492
Query 358 ATGGATTGATGGAACTACTTTAACTGCTTCAAAACCGGGTTCTGGAATCGTTGTCGCTGT 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 493 GTGGATTGATGGAACTACTTTAACTGCTTCAAAACCGGGTTCTGGAATTGTTGTTGCGGT 552
Query 418 TAAGAAGCTTAAAGCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAAGTGAACTA 477
||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 553 TAAGAAGCTTAAAACTGAAGGTTATCAAGGTCATAAAGAGTGGTTGACTGAAGTGAACTA 612
Query 478 TCTTGGTCAGCTTAGTCACCCAAATCTTGTCAAACTAGTTGGGTATTGTGTAGAGGGCGA 537
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 613 TCTTGGTCAGCTTAGTCACCCAAATCTCGTCAAACTTGTTGGGTATTGTGTAGAGGGAGA 672
Query 538 AAACCGGTTACTGGTATACGAGTTCATGCCAAAAGGAAGCTTGGAGAATCATCTTTTTAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AAACCGGTTACTGGTATACGAGTTCATGCCAAAAGGAAGCTTGGAGAATCATCTTTTTAG 732
Query 598 ACGTGGTGCACAGCCACTTACGTGGGCTATAAGGATGAAAGTTGCAATAGGAGCAGCCAA 657
|||||| || ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 733 ACGTGGCGCTCAGCCACTTACGTGGGCTATAAGGATGAAAGTTGCAATAGGGGCTGCCAA 792
Query 658 GGGACTTACTTTTCTCCATGATGCAAAATCGCAAGTGATATACAGAGACTTTAAAGCTGC 717
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 793 AGGACTTACTTTTCTCCATGATGCGAAATCGCAAGTGATATACAGAGACTTTAAAGCTGC 852
Query 718 TAACATCCTACTCGACGCGGAATTCAACAGTAAACTTTCAGACTTCGGTCTAGCTAAAGC 777
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TAACATTCTACTTGATGCGGAATTCAACAGTAAACTTTCAGACTTCGGTCTAGCTAAAGC 912
Query 778 AGGTCCTACCGGTGACAAGACTCATGTGTCCACACAAGTCATGGGTACTCACGGATATGC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AGGTCCTACCGGTGACAAGACTCATGTGTCCACACAAGTCATGGGTACTCACGGATATGC 972
Query 838 CGCCCCTGAATATGTAGCAACAGGTCGATTAACAGCTAAGAGCGATGTATACAGTTTCGG 897
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 973 TGCCCCGGAATATGTAGCAACAGGTCGATTAACTGCTAAGAGCGATGTATACAGTTTCGG 1032
Query 898 TGTGGTACTACTGGAATTACTCTCAGGACGAAGAGCGGTGGACAAATCAAAAGTGGGAAT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TGTGGTACTACTGGAATTACTCTCAGGACGAAGAGCGGTGGACAAATCAAAAGTGGGAAT 1092
Query 958 GGAACAGAGTCTTGTGGACTGGGCAACACCGTATCTTGGTGACAAGCGAAAGCTCTTTAG 1017
|||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1093 GGAACAGAGTCTAGTGGACTGGGCAACACCGTATCTCGGCGACAAGCGGAAGCTCTTTAG 1152
Query 1018 AATAATGGACACGAGATTAGGCGGTCAGTATTCTCAAAAAGGAGCATACACAGCAGCTAG 1077
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1153 AATAATGGACACGAGATTAGGCGGTCAGTATCCTCAAAAAGGAGCATACACAGCAGCTAG 1212
Query 1078 TCTTGCATTGCAATGCTTAAACCCCGACGCAAAACTCAGACCTAAAATGTCAGAAGTTTT 1137
|||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct 1213 TCTTGCATTGCAATGCTTAAACCCTGACGCAAAACTGAGACCGAAAATGTCGGAAGTTTT 1272
Query 1138 GGCCAAATTAGATCAGCTTGAATCAACGAAACCTGGAACTGGAATTGGAAACAGACAAGC 1197
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1273 GGCCAAATTAGATCAGCTTGAATCAACGAAACCTGGAACTGGAGTTGGAAACAGACAAGC 1332
Query 1198 TCAGATTGATTCCCCAAGAGGTAGTAATGGATCTGTTGTACAGAAATCTCCGAGGAGGTA 1257
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1333 ACAGATTGATTCCCCAAGAGGTAGTAATGGATCTATTGTACAGAAATCTCCAAGGAGGTA 1392
Query 1258 TAGTTATGATCGGCCTCTCTTACACATAACTCCTGGTGCTTCTCCTTTGCCTTCTCACAA 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1393 TAGTTATGATCGGCCTCTCTTACACATAACTCCTGGTGCTTCTCCTTTGCCTACTCACAA 1452
Query 1318 TCACTCTCCTCGTGTAAGATAGGAATCACGGTAATAGTTTTTCTTTTGTCTTTGTCTGTT 1377
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 1453 TCACTCTCCTCGTGTAAGATAGGAATCACTGTAATAGTTAT-CTTTTGTCTTTGTCTGTT 1511
Query 1378 GTATGCTGCTCTGTGTGTAAAATGTGTTGTGTAACGGACCAAAGTTTCATTCTTGGCTCA 1437
|||||||| | | ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1512 GTATGCTG-T-T-TGT--AAAATGTGTTGTGTAATGGACCAAAGTTTCATTCTTGGCTCA 1566
Query 1438 GTTTATAAAATTTGGTTTCAATATGGTTTGTT 1469
||||||||||||||||||| |||||||||||
Sbjct 1567 ATTTATAAAATTTGGTTTCAGTATGGTTTGTT 1598
> AT1G14370.1 | Symbols: APK2A, PBL2 | protein kinase 2A | chr1:4915576-4918138
FORWARD LENGTH=1743
Length=1743
Score = 1066 bits (577), Expect = 0.0
Identities = 1075/1310 (82%), Gaps = 56/1310 (4%)
Strand=Plus/Plus
Query 56 GAAATGGGTAATTGCTTAGATTCATCAGCTAAAGTGGATAGTAGCAGCCATAGTCCTCAT 115
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||| || |||
Sbjct 281 GAAATGGGTAATTGTTTAGATTCATCAGCTAAAGTGGATAATAGCAACCATAGCCCACAT 340
Query 116 GCTAATTCTGCTTCGTT-GAGCTC-AAGAGTTTCAAGCAAGACAAGTCGTTCCACAGTTC 173
|||||||||||||| || | |||| || |||||||||||||||||| ||||| || | ||
Sbjct 341 GCTAATTCTGCTTC-TTCGGGCTCTAA-AGTTTCAAGCAAGACAAGCCGTTCAACGGGTC 398
Query 174 CTTCAAG-CTTAAGCATAAATTCTTACAG--CAG-T-GT-G----GAGTCTTTACCTACA 223
||||| | | |||||| || ||||||||| ||| | || | | | | ||||| |||
Sbjct 399 CTTCAGGAC-TAAGCACAACTTCTTACAGCACAGATAGTAGTTTTGGGCCATTACCAACA 457
Query 224 CCAAGAACAGAAGGAGAGAT-TTTGTCATCACCAAATCTTAAAGCTTTCACCTTT-AACG 281
| || |||||||||||||| || ||||| || || || |||||||||| |||| ||||
Sbjct 458 CTTAGGACAGAAGGAGAGATACTT-TCATCGCCTAACCTAAAAGCTTTCA-CTTTCAACG 515
Query 282 AGCTCAAGAACGCTACTAGGAA-TTTCCGACCCGATAGTCTTTTAGGTGAAGGAGGTTTT 340
| ||||||||||| |||| ||| ||| || | |||| ||| |||| |||||||||||
Sbjct 516 AACTCAAGAACGCGACTAAGAACTTT-CGTCAAGATAATCTACTAGGGGAAGGAGGTTTC 574
Query 341 GGTTATGTGTTTAAAGGATGGATTGATGGAACTA-CTTTAACTGCTTCAAAACCGGGTTC 399
|||| ||| || ||||||||||||||| ||| | || | ||||||||| || |||||
Sbjct 575 GGTTGTGTATTCAAAGGATGGATTGATCAAAC-ATCTCTCACTGCTTCACGTCCCGGTTC 633
Query 400 TGGAATCGTTGTCGCTGTTAAGAAGCTTAAAG-CTGAAGGTTTTCAAGGTCATAAGGAGT 458
|||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||| ||||
Sbjct 634 TGGAATCGTTGTTGCTGTTAAGCAGCTT-AAGCCTGAAGGTTTTCAAGGTCATAAAGAGT 692
Query 459 GGTTGACTGAAGTGAACTATCTTGGTCAGCTTAGTCACCCAAATCTTGTCA-AACTAGTT 517
||||||||||||| |||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 693 GGTTGACTGAAGTAAACTATCTTGGTCAACTTAGTCACCCAAATCTTGT-ATTACTAGTT 751
Query 518 GGGTATTGTGTAGAGGGCGAAAACCGG-TTACTGGTATACGAGTTCATGCCAAAAGGAAG 576
|||||||| | || |||||||||||| || || ||||| || |||||||||||||||||
Sbjct 752 GGGTATTGCGCGGAAGGCGAAAACCGGCTT-CTTGTATATGAATTCATGCCAAAAGGAAG 810
Query 577 CTTGGAGAATCATCTTTTTAGACGTGGTGCACAGCCACTTACGTGGGCTATAAGGATGAA 636
||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 811 CTTGGAGAATCATCTTTTTAGACGTGGGGCGCAGCCACTTACATGGGCAATAAGGATGAA 870
Query 637 AGTTGCAATAGGAGCAGCCAA-GGGACTTACTTTTCTCCATGATGCAAAATCGCAAGTGA 695
||| || |||| ||||| || ||| || |||||||| ||||| ||||| || |||||||
Sbjct 871 AGTGGCGGTAGGTGCAGCTAAAGGG-CTAACTTTTCTTCATGAAGCAAAGTCACAAGTGA 929
Query 696 TATACAGAGACTTTAAAGCTGCTAACATCCTACTCGACGCGGAATTCAACAG-TAAACTT 754
|||||||||||||||||||||||||||| ||||||||||| || ||||| | ||| |||
Sbjct 930 TATACAGAGACTTTAAAGCTGCTAACATTCTACTCGACGCTGACTTCAAT-GCTAAGCTT 988
Query 755 TCAGACTTCGG-TCTAGCTAAAGCAGGTCCTACCGGTGACAAGACTCATGTGTCCACACA 813
||||| ||||| | | || |||||||||||||| ||||| || || |||||||| ||| |
Sbjct 989 TCAGATTTCGGAT-TGGCAAAAGCAGGTCCTACTGGTGATAATACACATGTGTCAACA-A 1046
Query 814 AG-TCATGGGTACTCACGGATATGCCGCCCCTGAATATGTAGCAACAGGTCGATTAACAG 872
|| |||| |||||||| |||||||| || ||||||||||| || |||||| ||||||| |
Sbjct 1047 AGGTCATTGGTACTCATGGATATGCAGCTCCTGAATATGTTGCCACAGGTAGATTAACCG 1106
Query 873 CTAAGAGCGATGTATACAGTTTCGGTGTGGTACTACTGGAATTACTCTCAGGACGAAGAG 932
| ||||| ||||| ||||| ||||| || || ||||| ||| || | |||||||| | |
Sbjct 1107 CAAAGAGTGATGTGTACAGCTTCGGGGTCGTGCTACTAGAACTAATATCAGGACGGCGTG 1166
Query 933 CGGTGGACAAATCAAAAGTG-GGAATGGAACAGAGTCTTGTGGACTGGGCAACACCGTAT 991
| ||||||| || || | | |||| || | |||||||| || ||||||||||||||
Sbjct 1167 CCATGGACAATTCGAATG-GAGGAAACGAGTATAGTCTTGTAGATTGGGCAACACCGTAC 1225
Query 992 CTTGGTGACAAGCGAAAGCTCTTTAGAATAATGGACACGAGATTAGGCGGTCAGTATTCT 1051
||||| || ||||||||||| ||| | ||||||||||||| | |||| ||||| ||| |
Sbjct 1226 CTTGGCGATAAGCGAAAGCTTTTTCGCATAATGGACACGAAACTAGGGGGTCAATATCCA 1285
Query 1052 CAAAAAGGAGCATACACAGCAGCTAGTCTTGCATTGCAATGCTTAAACCCCGACGCAAAA 1111
||||| ||||| | |||||| |||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1286 CAAAAGGGAGCTTTCACAGCTGCTAATCTTGCATTGCAATGCTTAAATCCCGATGCAAAA 1345
Query 1112 CTCAGACCTAAAATGTCAGAAGTTTTGGCCAAATTAGATCAGCTTGAATCAACGAAACCT 1171
||| | || ||||||||||| ||||| | || |||||| ||||| ||||| || | |
Sbjct 1346 CTCCGGCCAAAAATGTCAGAGGTTTTAGTCACATTAGAACAGCTAGAATC--CGTTGC-T 1402
Query 1172 GGAAC-TGGAATTGGAAACAGACAAGCTCAGATTGATTCCCCAAGAGGT-AGTAATGGAT 1229
||| ||||| ||||| || | || || || || |||||| | | | || |
Sbjct 1403 A-AACCTGGAACC--AAACACAC---C-CAAATGGAATCTCCAAGATTTCA-TCATTCTT 1454
Query 1230 CTGTTGTACAGAAATCTCCGAGGAGG-TATAGTTATGATCGGCCTCT-CTTACACATAAC 1287
||||| | |||||||||||| | | | |||||| ||||||||||||| || ||||| ||
Sbjct 1455 CTGTTATGCAGAAATCTCCG-GTAAGATATAGTCATGATCGGCCTCTGCTG-CACATGAC 1512
Query 1288 TCCTGGTGCTTCTCCTTTGCCTTCTCACAATCACTCTCCTCGTGTAAGAT 1337
||||||||| || ||||| |||||| ||| ||| ||||||||||||||||
Sbjct 1513 TCCTGGTGCATCGCCTTTACCTTCTTACACTCAATCTCCTCGTGTAAGAT 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72439386435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5