BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484188
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02810.1 | Symbols: ATUTR1, UTR1 | UDP-galactose transporter... 1786 0.0
AT1G14360.1 | Symbols: ATUTR3, UTR3 | UDP-galactose transporter... 974 0.0
> AT2G02810.1 | Symbols: ATUTR1, UTR1 | UDP-galactose transporter
1 | chr2:801530-803436 FORWARD LENGTH=1259
Length=1259
Score = 1786 bits (967), Expect = 0.0
Identities = 1147/1232 (93%), Gaps = 19/1232 (2%)
Strand=Plus/Plus
Query 1 TCGGATTCGATCAGTGAAATTCGAATCGAAACGGCGCCGGAGGAATCATCGCCGGTGTCG 60
|||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| |
Sbjct 34 TCGGATTCGATCAGTGAAATTCGAATCGAAGCGCCGCCGGAAGAATCATCGCCGGTGT-G 92
Query 61 GG-GCGTTT-CCGTAGCGGCGATGGAGGTTCATGGCTCCGGATTCCGTCGAATGCTGTTG 118
|| |||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 93 GGAGCGTTTCCCGGAGCGGCGATGGAGGTCCATGGCTCCGGATTCCGTCGAATTCTGTTG 152
Query 119 TTGGCGTTGTGTATCTCCGGGATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 TTGGCGTTGTGTATCTCCGGGATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAG 212
Query 179 ACTCTGTCCACCAAGATATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCATTCTTG 238
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 ACTCTGTCCACGAAGAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCATTCTTG 272
Query 239 AACTTGGCTCAGAGTGTAGTCTGCTTGGTTTGGTCTTATATAATGATCAAGCTCTGGTCA 298
||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 273 AACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAATGATCAAGCTCTGGTCA 332
Query 299 AACGCTGGTAATGGTGGAGCACCATGGTGGGCGTATTGGAGTGCCGGCATTACTAATACG 358
|| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 333 AATGCTGGTAACGGTGGAGCACCATGGTGGACGTATTGGAGTGCAGGCATTACTAATACA 392
Query 359 ATTGGTCCTGCCATGGGAATTGAAGCTTTGAAGTATATCAGTTATCCAGCTCAGGTCCTG 418
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 393 ATTGGTCCTGCCATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCTCAGGTTTTG 452
Query 419 GCAAAGTCGTCGAAAATGATTCCAGTTATGCTAATGGGAACTTTGGTTTACGGAATAAGA 478
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 453 GCAAAATCGTCAAAAATGATTCCAGTTATGCTAATGGGAACTTTAGTTTACGGAATAAGA 512
Query 479 TACACCTTCCCTGAATACATTTGCACCTTTCTTGTCGCGGGAGGAGTATCTTTCTTTGCT 538
||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 513 TACACTTTCCCTGAATACATGTGCACCTTTCTTGTCGCTGGAGGAGTATCCATCTTTGCT 572
Query 539 CTTCTTAAGACAAGTTCAAAGACAATTAGCAAGCTAGCACATCCCAATGCACCCTTAGGC 598
|||||||||||||| || |||||||||||||||||||||||||| ||||| ||| | ||
Sbjct 573 CTTCTTAAGACAAGCTCTAAGACAATTAGCAAGCTAGCACATCCAAATGCTCCCCTCGGT 632
Query 599 TACGCACTTTGCTT-CTTAAACCTTGCCTTTGACGGATTCACAAACGCTACCCAAGACTC 657
||||||||||| || ||||||||| |||||||||||||||||||| || || ||||||||
Sbjct 633 TACGCACTTTG-TTCCTTAAACCTCGCCTTTGACGGATTCACAAATGCCACACAAGACTC 691
Query 658 TATTGCCTCAAGATACCCAAAAACCGAAGCGTGGGATATAATGCTCGGAATGAACTTATG 717
||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 692 CATTGCCTCAAGGTACCCGAAAACCGAAGCGTGGGACATAATGCTGGGAATGAACTTATG 751
Query 718 GGGAACAATATACAACATGATATATATGTTTGGATTGCCACAAGGGATTGGATTCGAAGC 777
||| ||||||||||||||||| || |||||||| |||||||||||||| |||||| ||||
Sbjct 752 GGGCACAATATACAACATGATCTACATGTTTGGCTTGCCACAAGGGATAGGATTCAAAGC 811
Query 778 AATTCAGTTCTGTAAGCTACACCCGGAAGCTGCATGGGACATTCTAAAGTATTGTCTATG 837
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 812 AATTCAGTTCTGTAAGCTACACCCGGAAGCGGCATGGGACATTCTAAAGTATTGTATATG 871
Query 838 TGGTGCCGTGGGACAAAACTTCATCTTTATGACCATAAGTAACTTCGGGTCACTAGCTAA 897
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 872 CGGTGCCGTGGGACAAAACTTCATCTTCATGACAATAAGTAACTTCGGGTCACTAGCTAA 931
Query 898 CACGACCATAACCACGACCAGGAAGTTTGTTAGCATAGTTGTATCATCAGTAATGAGCGG 957
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 932 CACGACCATAACCACGACCAGGAAGTTTGTTAGCATTGTTGTATCATCAGTAATGAGCGG 991
Query 958 AAATCCATTGTCGTTGAAGCAATGGGGATGTGTTTCGATGGTCTTTGGTGGTTTGTCATA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 992 AAATCCATTGTCGTTGAAGCAATGGGGATGTGTTTCGATGGTCTTTGGTGGTTTGGCATA 1051
Query 1018 TCAGATTTATCTTAAATGGAGGAAAATGCAGAGAGTGGAGAAGAAGAAGCAAAAGAGTTG 1077
||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1052 TCAAATTTATCTTAAATGGAAGAAATTGCAGAGAGTGGAGAAGAAGAAGCAAAAGAGTTG 1111
Query 1078 AAGTTTTTCCCTCATATCACTAAATTACTTTTCAGTTATTGTTAGTTTAT----GTCACT 1133
|||||||||||||||||| ||||||||| | ||||||||| ||||||||| ||||||
Sbjct 1112 AAGTTTTTCCCTCATATCTCTAAATTACGTATCAGTTATTCTTAGTTTATTTATGTCACT 1171
Query 1134 AGTCAATACAAATAGAGAATCTCAAACCAGATTAGTTAACTGTAAAAGTAACATTACCAA 1193
|||||||||||| || || |||||||||||||||||||||||| |||||||||||| ||
Sbjct 1172 AGTCAATACAAA--GA-AA-CTCAAACCAGATTAGTTAACTGTATAAGTAACATTACTAA 1227
Query 1194 TACTAATCAGTAAAATATATGATTTGAATTTT 1225
| | | | ||||||||||||||||||||||
Sbjct 1228 T-C-A--C--TAAAATATATGATTTGAATTTT 1253
> AT1G14360.1 | Symbols: ATUTR3, UTR3 | UDP-galactose transporter
3 | chr1:4911093-4913152 REVERSE LENGTH=1388
Length=1388
Score = 974 bits (527), Expect = 0.0
Identities = 851/1007 (85%), Gaps = 23/1007 (2%)
Strand=Plus/Plus
Query 70 CGTAGCGGCGATGGAGGT-TCATGGCTCCGGAT-TCCGTCGAATGCTGTTGTTGGCGTTG 127
||| ||||||||||| | ||| || ||||| | |||| ||| | ||||| ||| ||||
Sbjct 115 CGT-GCGGCGATGGA-ATCTCACGGTTCCGG-TCTCCGGCGAGTTCTGTTATTGTCGTTC 171
Query 128 TGTATCTCCGGGATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAGA-CTCTGTC 186
||| || | ||||||||| | || ||||| ||||||||| |||||||||||| || ||||
Sbjct 172 TGTGTCGCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCT-TGTC 230
Query 187 CACCAAGATATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCA-TTCTTGAACTTGG 245
|| |||| ||||||| ||||| |||||| ||||||||||||||| ||| |||| ||||
Sbjct 231 GACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATTTC-TGAATTTGG 289
Query 246 CTCAGAGTGTAGTCTGCTTGGTTTGGTCTTATATAATGATCAAGCTCTGGTCAAACGCTG 305
|||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||| |
Sbjct 290 CTCAGAATGTAATCTGCTTGGTTTGGTCTTATATAATGATTAAGCTCTGGTCCAACGGAG 349
Query 306 GTAATGGTGGAGCACCATGGTGGGCGTATTGGAGTGCCGGCATTACTAATACGATTGGTC 365
|| ||||||||| ||||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct 350 GTTCTGGTGGAGCCCCATGGTGGACGTATTGGAGTGCTGGCATTACTAATACCATTGGTC 409
Query 366 CTGCCATGGGAATTGAAGCTTTGAAGTATATCAGTTATCCAGCTCAGGTCCTGGCAAAGT 425
|||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||| |
Sbjct 410 CTGCTATGGGCATTGAAGCTTTAAAGTATATTAGTTACCCAGCTCAGGTCCTTGCAAAAT 469
Query 426 CGTCGAAAATGATTCCAGTTATGCTAATGGGAACTTTGGTTTACGGAATAAGATACACCT 485
| || |||||||||||||||||||| ||||| | || ||||| || ||||||||||| |
Sbjct 470 CTTCCAAAATGATTCCAGTTATGCTGATGGGCTCCTTAGTTTATGGCATAAGATACACTT 529
Query 486 TCCCTGAATA-CATTTGCACCTTTCTTGTCGCGGGAGGAGTATCTTTCTTTGCTCTTCTT 544
| ||||| || | |||||||||||||||| || |||||||||||| | ||||| ||||||
Sbjct 530 TGCCTGAGTATC-TTTGCACCTTTCTTGTTGCCGGAGGAGTATCTATGTTTGCCCTTCTT 588
Query 545 AAGACAAGTTC-AAAGACAATTAGCAAGCTAGCACATCCCAATGCACCC-TTAGGCTACG 602
|||||||| || ||| || || ||||||||||||||||||||||||||| || || ||||
Sbjct 589 AAGACAAGCTCTAAA-ACCATCAGCAAGCTAGCACATCCCAATGCACCCCTT-GGTTACG 646
Query 603 CACTTTGCTTCTTAAACCTTGCCTTTGACGGATTCACAAACGCTACCCAAGACTCTATTG 662
|||||||||||||||||||||||||| |||||||||||||| ||||| || || |||
Sbjct 647 GGCTTTGCTTCTTAAACCTTGCCTTTGATGGATTCACAAACGCAACCCAGGATTCCATTA 706
Query 663 CCTCAAGATACCCAAAAACCGAA-GCGTGGGATATAATGCTCGGAATGAACTTATGGGGA 721
|| |||| ||||| ||||| || || ||||| |||||||| |||||||| |||||||||
Sbjct 707 CCGCAAGGTACCCCAAAACT-AACGCATGGGACATAATGCTGGGAATGAATTTATGGGGA 765
Query 722 ACAATATACAACATGATATATATGTTTGGATTGCCACAAGGGATTGGATTCGAAGCAATT 781
|| |||||||||||| | || ||||||||||||||||| |||| ||||| ||||| |
Sbjct 766 ACCATATACAACATGGTCTACATGTTTGGATTGCCACATGGGAGCGGATTTGAAGCTGTG 825
Query 782 CAGTTCTGTAAGCTACACCCGGAAGCTGCATGGGACATTCTAAAGTATTGTCTATGTGGT 841
|||||||| |||| |||||| || || |||||||||||||| | ||| ||| |||| |||
Sbjct 826 CAGTTCTGCAAGCAACACCCTGAGGCAGCATGGGACATTCTTATGTACTGTTTATGCGGT 885
Query 842 GCCGTGGGACAAAACTTCATCTT-TATGACCATAAGTA-ACTTCGGGTCACTAGCTAACA 899
|| || || |||||||||||||| | |||| ||||| | | |||||||| ||||||||||
Sbjct 886 GCAGTAGGCCAAAACTTCATCTTCT-TGACAATAAGCAGA-TTCGGGTCTCTAGCTAACA 943
Query 900 CGACCATAACCACGACCAGGAAGTTTGTTAGCATAGTTGTATCATCAGTAATGAGCGGAA 959
||||||||||||| |||||||||||||| ||||| || ||||| ||||| ||||||| |
Sbjct 944 CGACCATAACCACAACCAGGAAGTTTGTAAGCATCGTGGTATCTTCAGTTTTGAGCGGGA 1003
Query 960 ATCCATTGTCGTTG-AAGCAATGGGGATGTGTTTCGATGGTCTTTGGTGGTTTGTCATAT 1018
|||| || || || || |||||||||||||| |||||||| || ||||| ||||| ||
Sbjct 1004 ATCCGTTATC-TTCCAAACAATGGGGATGTGTGTCGATGGTGTTCGGTGGATTGTCTTAC 1062
Query 1019 CAGATTTATCTTAAATGGAGGAAAATGCAGAGAGTGGAGAAGAAGAA 1065
|| ||||| || ||||||||||| |||||||| || ||||||||||
Sbjct 1063 CAAATTTACCTGAAATGGAGGAAGCTGCAGAGAATGCAGAAGAAGAA 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60190453455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5