BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484189
Length=2032
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02820.2 | Symbols: MYB88 | myb domain protein 88 | chr2:804... 2872 0.0
AT1G14350.1 | Symbols: FLP, AtMYB124, MYB124 | Duplicated homeo... 732 0.0
> AT2G02820.2 | Symbols: MYB88 | myb domain protein 88 | chr2:804174-807208
REVERSE LENGTH=2066
Length=2066
Score = 2872 bits (1555), Expect = 0.0
Identities = 1909/2069 (92%), Gaps = 67/2069 (3%)
Strand=Plus/Plus
Query 1 AAGAAATTTTTACAGAC--GAGAGCGTCagagagaga-aagagacc-aaacttctttaat 56
||||| ||||||||||| |||||||||||||||||| || || || |||||| ||||||
Sbjct 14 AAGAATTTTTTACAGACGAGAGAGCGTCAGAGAGAGAGAA-AGGCCAAAACTT-TTTAAT 71
Query 57 ggaagagacaacgaagcag-ac--c---aagaagaagaagaaAATTCTTGTTAATTCCGA 110
|||||||||||| |||||| || | |||||||||||||| |||||| || |||||||
Sbjct 72 GGAAGAGACAACTAAGCAGAACAACATGAAGAAGAAGAAGAAGATTCTTCTTCATTCCGA 131
Query 111 TGATTCCAAGAAGAAGGAGCGTCATATTGTTACTTGGTCTCCAGAGGAAGATGATATACT 170
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 132 TGATTCCAAGAAGAAGGAGCGTCATATTGTTACTTGGTCTCCTGAGGAGGATGATATACT 191
Query 171 AAGGAAGCAAATCAGTTTACTTGGAACTGAAAATTGGGCGATCATTGCATCCAAGTTTAC 230
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 192 AAGGAAGCAAATCAGTTTACAGGGAACTGAAAATTGGGCGATCATTGCATCCAAGTTTAA 251
Query 231 TGATAAGAGCACAAGGCAGTGTCGAAGAAGATGGTATACATACTTAAACTCTGATTTCAA 290
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 252 TGATAAGAGCACAAGGCAGTGTAGAAGAAGATGGTATACATACTTGAACTCTGATTTCAA 311
Query 291 GAGAGGAGGTTGGTCCCCTGAAGAAGATACACTGTTGTGTGAGGCACAGAGATTGTTTGG 350
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 312 GAGAGGAGGTTGGTCCCCTGAAGAAGATACACTTTTGTGTGAGGCACAGAGATTGTTTGG 371
Query 351 GAACAGGTGGACTGAGATAGCAAAAGTGGTCTCAGGAAGAACGGATAATGCTGTGAAGAA 410
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GAATAGGTGGACTGAGATAGCAAAAGTGGTCTCAGGAAGAACGGATAATGCTGTGAAGAA 431
Query 411 CAGGTTTACTACACTGTGCAAGAAGAGGGCTAAGCATGAAGCCATGGCGAAAGAGAACAG 470
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 432 CAGGTTTACTACACTGTGCAAGAAGAGGGCTAAGCATGAAGCTATGGCGAAAGAGAACAG 491
Query 471 GATTGCTTGTTGTGTGAACTCAAACAACAAGAGATTGTTGTTCCCAGATGGTATTAGTAC 530
||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 492 GATTGCTTGTTGTGTTAACTCAGACAACAAGAGACTGTTGTTCCCAGATGGTATTAGTAC 551
Query 531 ACCTCGAAAAGCCGAAAGTGAATCTCCTCTTACTAAGAAAATGAGGAGAAGTCATATTCC 590
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 ACCGCTAAAAGCCGAAAGTGAATCTCCTCTTACTAAGAAAATGAGGAGAAGTCATATTCC 611
Query 591 AGATCTTACAGAGATCAAGAGCTATGGAGATAGATCACATTTAAAGGTTGAATCGGCTAT 650
| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct 612 AAATCTTACAGAGATTAAGAGCTATGGGGATAGATCACATATAAAGGTTGAATCGACTAT 671
Query 651 GACTCAACAGAGTAGACCTCCATTTTCGGTAGTAGCCCACAATGCCACAGGTATTGATGG 710
|| ||||||||| |||| ||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 672 GAATCAACAGAGAAGACATCCATTTTCTGTAGTAGCCCACAATGCCACAAGTAGTGATGG 731
Query 711 CACCA-AAGAGCAAAAACAAACAGGCAATGCAAAAGAGAGTGACGGTGAGGATAAAGGTA 769
| || | ||||| ||||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 732 TA-CAGAGGAGCAGAAACAAATAGGCAATGTGAAAGAGAGTGACGGTGAGGATAAAAGTA 790
Query 770 ACCAAGAGGCATTTCTTAAGAAGGATGATCCAAAGGTGACAGCTTTGAAGCAACAAGCTG 829
||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 791 ACCAAGAGGTGTTTCTTAAGAAGGATGATTCAAAGGTGACAGCTTTGATGCAACAAGCTG 850
Query 830 AGCTTCTCAGTTCATTGGCCCAGAAAGTTAATGCAGACAACACAGATCAAAGCATGGAGA 889
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 851 AACTTCTCAGTTCATTGGCCCAGAAAGTTAATGCAGACAACACAGACCAAAGCATGGAGA 910
Query 890 ATGCCTGGAAGGTTCTACAGGATTTCTTGAATAAGAGCAAAGAAAATGATCTATTCAGAT 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 911 ATGCCTGGAAGGTTCTACAGGATTTCTTGAATAAGAGCAAAGAAAATGATCTATTTAGAT 970
Query 950 ATGGAATCCCAGATATCGATTTCCAACTCGATGAATTTAAAGATCTCGATGAGGACTTGA 1009
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 971 ATGGAATCCCAGATATTGATTTCCAACTCGATGAATTTAAAGATCTTGTTGAGGACTTGA 1030
Query 1010 GGATTAATAATGAAGATAGTCAATCATCTTGGAGGCAACCTGATCTCCATGATTCACCAG 1069
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GGAGTAGTAATGAAGATAGTCAATCATCTTGGAGGCAACCTGATCTCCATGATTCACCAG 1090
Query 1070 CAAGCTCTGAATATAG--C----TCAGGATCAGGATCAACCATAATGCCGCATCCTTCTG 1123
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||
Sbjct 1091 CAAGCTCTGAATATAGCTCAGGATCAGGATCAGGATCAACCATAATGACGCATCCTTCTG 1150
Query 1124 GTGATAAAACCCAACAACCCATGTCTGATACTCAGACAACATTGCAGAAACAAAATGATG 1183
|||||||||||||||||| |||||||||||||||||||||| || | ||||||| ||
Sbjct 1151 GTGATAAAACCCAACAACTTATGTCTGATACTCAGACAACATCACATCAGCAAAATGGTG 1210
Query 1184 GGGATTTACTACTAGATAAAGGGATTGTGTCTGATACAACTGTGGAACAAGTAAATTTAC 1243
|||| ||||||| |||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 1211 GGGAGTTACTACAAGATAATGGGATTGTGTCTGATGCAACTGTGGAACAAGTGGGTTTAC 1270
Query 1244 TCACACCAT-GTCAGGAAGTCCTAAAGAACCCAAATGAGATTGTGCCCATGCCGGGTGAC 1302
|| || | | |||| || || |||||||| | ||||||| |||||| || ||||||||
Sbjct 1271 TCTCAAC-TGGTCATGATGTGTTAAAGAACTCTAATGAGACTGTGCCTATCCCGGGTGAA 1329
Query 1303 GAAGAGTTTAACTCACCTGTTCAAGTCACTCCATTGTTCAGATCTCTAGCAGCAGGCATC 1362
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 GAAGAGTTTAACTCGCCTGTTCAAGTCACTCCATTGTTCAGATCTCTAGCAGCAGGCATC 1389
Query 1363 CCAAGCCCACAATTCTCTGAAAGTGAGAGGAACTTTCTGCTAAAAACACTTGGTGTCGAG 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 CCAAGCCCACAATTCTCTGAAAGTGAGAGGAACTTTCTGCTAAAAACACTTGGTGTCGAG 1449
Query 1423 TCCCCATCTCCATATCCAAGTGCTAATCCTTCACAACCACCTCCTTGCAAAAGAGTCCTT 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 TCCCCATCTCCATATCCAAGTGCTAATCCTTCACAACCACCTCCTTGCAAAAGAGTCCTT 1509
Query 1483 CTCGATAGCTTGTAAACCA-A--A--C-----TCTCTAAACCaaaaaaa--CTGCCCCTA 1530
||||||||||||||||||| | | | ||||||||||||||||| | | ||| |
Sbjct 1510 CTCGATAGCTTGTAAACCAGACCAAACCAAGCTCTCTAAACCAAAAAAAAAC-GTCCCAA 1568
Query 1531 AA-CCGCGGTTATGTCCTCATGGAGGTGGACATAACCTGCATTTCTTCCCTCTTTTTGCT 1589
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1569 AAACCTCGGTTATGTCCTCATGGAGGTGGGCATAACCTGCATTTCTTCCCTCTTTTTGCT 1628
Query 1590 TAGATTTTCTCCATAGGTTTGCAGCCATATCGGCCTGAAAAGTTTTAGTGAAGCGGGCGT 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TAGATTTTCTCCATAGGTTTGCAGCCATATCGGCCTGAAAAGTTTTAGTGAAGCGGGCGT 1688
Query 1650 GCCATGATCTGCAtttttttCCTTCCTCAGTGTTCATAATCTAGAATCTAGAATGTTAAA 1709
||||||||||||||||||| ||| || | | | || |||||||||||||||||
Sbjct 1689 GCCATGATCTGCATTTTTT-CCT-CC-C--T---C-TA-----GAATCTAGAATGTTAAA 1734
Query 1710 GGTAACATTTCTAAAGTCTAGACCCATCTTATAAACTGAGTTTCTCTCTCAGATACTCAG 1769
||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 1735 GGTAACATTTCTAAAGTCTAGACCCATCTCAGAAGCTGAGTTTCTCTCTCAGATACTCAG 1794
Query 1770 GATTCCAAAATCTT-TGCTCACTCATTAGGAGAGTTTTCTTTTCATCATCATACTTAAAA 1828
||||| || |||| | ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1795 GATTCTAA--TCTTATCCTCACTCATTAGGAGAGTTTTCTTTCCATCATCATACTCAAAA 1852
Query 1829 GCCATTTCATAAAAAGGGCTaaaaaaaaGTATGAGTTTTTTCTTCCATTCATGATTTGTG 1888
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1853 GCCATTCCATAAAAAGGGCTAAAAAA--GTATGAGTTTTTTCTTCCATTCATGATTTGTG 1910
Query 1889 TGTCTTAAGAAAAATTCTTTCGTTTGTCTCCCTCTTCAAGGGTCAGACCCAGATACATAA 1948
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1911 TGTCT-AAGAAAAATTCTTTCGTTTGTCT---TC---AAGGGTCAGACCCAGATACATAA 1963
Query 1949 TCTTGGGTT-GTCTCCCCCA----TGAATTCTTGATTTGTTGTTTTCTTGATTCTCTGTA 2003
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1964 TCTTGGGTTTGTCTCCCCCACCCATGAATTCTTGATTTGTTGTTTTCTTGATTCTCTGTA 2023
Query 2004 CAGAACCTATATTATTACATaaaaaaaaa 2032
||||||||||||| |||||||||||||||
Sbjct 2024 CAGAACCTATATTCTTACATAAAAAAAAA 2052
> AT1G14350.1 | Symbols: FLP, AtMYB124, MYB124 | Duplicated homeodomain-like
superfamily protein | chr1:4908255-4911168 FORWARD
LENGTH=2004
Length=2004
Score = 732 bits (396), Expect = 0.0
Identities = 853/1062 (80%), Gaps = 78/1062 (7%)
Strand=Plus/Plus
Query 112 GATTCCAAGAAGAAGGAGCGTCATATTGTTACTTGGTCTCCAGAGGAAGATGATATACTA 171
||||||||||| || ||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 221 GATTCCAAGAAAAAAGAGCGTCATATTGTTACTTGGTCACAAGAGGAAGATGTTATACTA 280
Query 172 AG-GAAGCAAATCAGTTTACTTGGAACTGAAAATTGGGCGATCATTGCATCCAAGTTTAC 230
|| ||| ||||| | | ||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 281 AGAGAA-CAAATAACTCTACATGGAACTGAAAATTGGGCGATCATTGCATCAAAGTTCAA 339
Query 231 TGATAAGAGCACAAGGCAGTGTC-GAAGAAGATGGTATACATACTTAAACTCTGATTTCA 289
|| || |||||||| || || | ||||||||||||||||||||||||||||||||||||
Sbjct 340 AGACAAAAGCACAAGACAATG-CAGAAGAAGATGGTATACATACTTAAACTCTGATTTCA 398
Query 290 AGAGAGGAGGTTGGTCCCCTGAAGAAGATACACTGTTGTGTGAGGCACAGAGATTGTTTG 349
| |||||||||||||||||||||||||||| || |||||||||||||| ||| | ||||
Sbjct 399 AAAGAGGAGGTTGGTCCCCTGAAGAAGATATGCTTTTGTGTGAGGCACAAAGAGTATTTG 458
Query 350 GGAACAGGTGGACTGAGATAGCAAAAGTGGTCTCAGGAAGAACGGATAATGCTGTGAAGA 409
| || || ||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct 459 GTAATAGATGGACTGAGATAGCAAAGGTGGTTTCAGGCAGAACTGATAATGCTGTGAAGA 518
Query 410 ACAGGTTTACTACACTGTGCAAGAAGAGGGCTAAGCATGAAGCCATGGCGAAAGAGAACA 469
|||||||||| ||||| || |||||||| || ||||||||||| ||| | ||||| ||
Sbjct 519 ACAGGTTTACAACACTTTGTAAGAAGAGAGCCAAGCATGAAGCTATGACTAAAGA---CA 575
Query 470 GGATTGCTTGTTGTGTGAACTCAAACAACAAGAGATTGTTGTTCCCAGATGGTATTAGTA 529
| | |||||||||| ||| ||| |||||||| ||| ||||| ||||
Sbjct 576 G-----C----------AACTCAAACACCAAAAGAATGTTGTTCTTAGACGGTATCAGTA 620
Query 530 CACCTCGAAAAGCCGA-AAGTGAATCTCCTCTTACTAAGAAAATGAGGAGAAGTCATATT 588
|||| |||||| |||| || |||| ||||| || |||||||| ||| ||||||||| |||
Sbjct 621 CACCGCGAAAATCCGAGAA-TGAAACTCCTATTGCTAAGAAATTGAAGAGAAGTCACATT 679
Query 589 CCAGATCTTACAGAGATCAAG-AGCTATGGA-GATA-GATCACATTTAAAGGTTGAATCG 645
| |||||| |||||||||| | | ||||||| | || ||| | | | |||||
Sbjct 680 CTAGATCTCACAGAGATCA-GTAACTATGGAAGGGCCGAGG-CATGT---G-T-GAATCA 732
Query 646 GCTATGACTCAACAGAGTAGACCTCCATTTTCGGTAGTAGCCC-ACAATGCCACAGGTAT 704
|| | || | || | || | |||||||||||| |||| | | |||||||| |||||
Sbjct 733 GC-A-GA-T-AA--G-GT---C-TCCATTTTCGGTTTTAGCTCGA-AATGCCACTGGTAT 780
Query 705 TGATGGCACCAAAGAGCAAAAACAAACAGGCAATGCAAAAGAGAGTGACGGTGAGGATAA 764
|||| || |||| || || |||||| |||||| || |||||||| ||||| |
Sbjct 781 TGATAGCTTGGAAGAACAGAATCAAACAAGCAATGTGAATGAGAGTGATGGTGA--A--- 835
Query 765 AGGTAACCAAGAGGCATTTCTTAAGAAGGATGATCCAAAGGTGACAGCTTTGAAGCAACA 824
|| || | ||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 836 -GG-------GATG--TTTCTTAAGAAGGATGATCCAAAAGTGACAGCTTTGATGCAACA 885
Query 825 AGCTGAGCTTCTCAGTTCATTGGCCCAGAAAGTTAATGCAGACAACACAGATCAAAGCAT 884
|||||| ||| | || || ||||| |||||||||||||||||||||||||| || || ||
Sbjct 886 AGCTGAACTTTTAAGCTCCTTGGCGCAGAAAGTTAATGCAGACAACACAGAACAGAGTAT 945
Query 885 GGAGAATGCCTGGAAGGTTCTACAGGATTTCTTGAATAAGAG-CAAAGAAAATGATCTAT 943
||||||||| ||||||||||| ||||| ||||||||||| || ||| || |||||| |||
Sbjct 946 GGAGAATGCTTGGAAGGTTCTTCAGGACTTCTTGAATAA-AGGCAAGGAGAATGATTTAT 1004
Query 944 TCAGATATGGAATCCCAGATATCGATTTCCA-ACTCGATGAATTTAAAGATCTCGAT-GA 1001
||||||||||||| || ||||| ||||| | | |||| |||||||| || || || ||
Sbjct 1005 TCAGATATGGAATACCTGATATAGATTTTAAGA-TCGAGGAATTTAAGGACCTT-ATAGA 1062
Query 1002 GGACTTGAGGATTAATAATGAAGATAGTCAATCATCTTGGAGGCAACCTGATCTCCATGA 1061
||| ||||||| | | ||||||| | ||||| ||||||||||||||||||||| |||||
Sbjct 1063 GGATTTGAGGAGTGGTTATGAAGACAATCAATTATCTTGGAGGCAACCTGATCTTCATGA 1122
Query 1062 TTCACCAGCAAGCTCTGAATATAGCTCAGGATCAGGATCAACCATAATGCCGCATCCTTC 1121
|||||||| |||||||| ||||| || | ||||||||||| ||| | ||| ||
Sbjct 1123 CTCACCAGCTAGCTCTGAGTATAGTTC-----C-GGATCAACCATCATGGTGGATCAGTC 1176
Query 1122 TGGTGATAAAACCCAACAAC-C-CATGTCTGATACTCAGACA 1161
|||||||||||| |||| | | || | | ||||||||||||
Sbjct 1177 TGGTGATAAAACACAACCATTCTCA-G-CAGATACTCAGACA 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100702293270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5