BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484191
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13720.1 | Symbols: | Inosine triphosphate pyrophosphatase ... 691 0.0
> AT4G13720.1 | Symbols: | Inosine triphosphate pyrophosphatase
family protein | chr4:7966952-7968925 REVERSE LENGTH=866
Length=866
Score = 691 bits (374), Expect = 0.0
Identities = 462/503 (92%), Gaps = 11/503 (2%)
Strand=Plus/Plus
Query 420 AAGTGGTTTCTTGAGAAGCTTGGTCATGAAGGTCTGAACGACTTACTGATGGCCTATGAA 479
||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 308 AAGTGGTTTCTAGAGAAGCTTGGTCACGAAGGTCTGAACAACTTACTGATGGCCTATGAA 367
Query 480 GATAAATCAGCTTATGCATTGTCCGCATTCTCTTTCTCACTTGGTCCAGGTGCTGAACCT 539
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 368 GATAAATCAGCTTATGCATTGTGCGCATTCTCTTTCTCGCGTGGTCCAGGTGCTGAACCT 427
Query 540 CTTACATTTTTGGGGAAAACTCCGGGTAAGATAGTTCCAGCAAGAGGACCAACTGATTTT 599
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 428 CTTACATTTTTGGGGAAAACTCCGGGTAAGATAGTTCCAGCCAGAGGACCAACTGATTTC 487
Query 600 GGGTGGGATCCAGTGTTTCAACCTGATGGATATGACCAAACTTATGCAGAAATGGCAAAG 659
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 488 GGATGGGATCCAGTGTTTCAACCTGATGGATATGACCAAACGTATGCAGAGATGGCAAAG 547
Query 660 GAAGAAAAGAACAAGATATCTCATAGGTACAAGTCTTTAGCAATGGTGAAATCTCATTTT 719
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 548 GAAGAAAAGAACAAGATATCACATAGGTACAAGTCTTTAGCATTGGTGAAATCTCACTTT 607
Query 720 AAAGAGGCTGGCTATGTGTTCCAGACAGATGATGGTACTAGTTAAAGAGAACCC-AA-TC 777
|| ||||||||||||||||||||||||||||||||||| | |||||||||||| || ||
Sbjct 608 AAGGAGGCTGGCTATGTGTTCCAGACAGATGATGGTACCATTTAAAGAGAACCAGAACTC 667
Query 778 AT-CA-C-T-GTCTCCAGCTTTTGAAGATTTGAGCACTGATCACTCACCAGATTCTTGTT 833
|| || | | |||| | || |||||||| | |||||| |||||||||||||||||||||
Sbjct 668 ATTCATCATTGTCTTCTGCGTTTGAAGAATGGAGCACCAATCACTCACCAGATTCTTGTT 727
Query 834 CCTATTCTAAGCTCCTTTGAGGA-TATTAATATTGTTTCCTTTTTGTTTTC-TCAAATAT 891
||||||||||||||||||| ||| |||| ||||||| | ||||| ||||| |||||||
Sbjct 728 CCTATTCTAAGCTCCTTTG-GGAATATTGATATTGTAAC-TTTTT-TTTTCCTCAAATAC 784
Query 892 AAGTAGAAACCATGGATTGAAAG 914
||||||||||||||||||| |||
Sbjct 785 AAGTAGAAACCATGGATTGCAAG 807
Score = 418 bits (226), Expect = 5e-116
Identities = 277/300 (92%), Gaps = 9/300 (3%)
Strand=Plus/Plus
Query 1 GCTTTCGCTATCTGAGAACTGAGACACAGAAAAT------GGCGGCGGCGAAAGCAGCGG 54
|||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 1 GCTTTCGCTATCTGAG-ACTGAGACACAGACAATGGCGGCGGCGGCGGCGAAAGCAGCGG 59
Query 55 TGGTTTTGCCACGGCCGGTGACTTTTGTGATTGGAAACGCCAAGAAGCTCGAAGAAGTCA 114
|||||||||||||||||||||| ||||||| |||||| || |||||||||||||||||||
Sbjct 60 TGGTTTTGCCACGGCCGGTGACGTTTGTGACTGGAAATGCTAAGAAGCTCGAAGAAGTCA 119
Query 115 AAGCTATCATCGGCAATTCCATTCCTTTCAAGTCTCTCAAACTCGACCTGCCTGAGCTTC 174
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 120 AAGCTATCATCGGAAATTCCATTCCTTTCAAGTCTCTCAAACTCGATTTGCCTGAGCTCC 179
Query 175 AAGGTGATCCTGAGGATATCTCCAAGGAGAAGGCTCGTTTGGCTGCTCTTCAGGTGAATG 234
||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 180 AAGGTGAGCCTGAGGATATTTCCAAAGAGAAGGCTCGTTTGGCTGCTCTTCAGGTGGATG 239
Query 235 GACCAGTGCTTGTGGAAGATACATGTCTCTGTTTCAATGCTTTGAA-GGGACGTCCTGGG 293
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 240 GACCAGTGCTTGTGGAAGATACATGTCTCTGTTTCAATGCTTTGAAAGGG-CTTCCTGGG 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46114946946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5