BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484193
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13510.1 | Symbols: AMT1;1, ATAMT1, ATAMT1;1 | ammonium tran... 2078 0.0
AT4G13505.1 | Symbols: | other RNA | chr4:7858000-7859691 REVE... 1816 0.0
AT3G24300.1 | Symbols: AMT1;3, ATAMT1;3 | ammonium transporter ... 837 0.0
> AT4G13510.1 | Symbols: AMT1;1, ATAMT1, ATAMT1;1 | ammonium transporter
1;1 | chr4:7858183-7859918 FORWARD LENGTH=1736
Length=1736
Score = 2078 bits (1125), Expect = 0.0
Identities = 1409/1550 (91%), Gaps = 4/1550 (0%)
Strand=Plus/Plus
Query 1 TCTTCTTCTCTAATCTCTCAACATGTCTTGCTCGGTGACCGAACTCGCCGTCTTGTTAGG 60
||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| |||| ||
Sbjct 16 TCTTCTTCTCTAAACTCTCAACATGTCTTGCTCGGCCACCGATCTCGCTGTCCTGTTGGG 75
Query 61 TCCCAATGCCACGGAGGCTGCCAACTACATCTGTGGCCAGCTAAGCGTCGTCGACAACAA 120
||| |||||||||| ||| ||||||||||||||||||||| || ||| |||| |||||||
Sbjct 76 TCCTAATGCCACGGCGGCGGCCAACTACATCTGTGGCCAGTTAGGCGACGTCAACAACAA 135
Query 121 GTTCATCGACGCCGCTTTCGCCATAGACACCACTTACCTCCTCTTCTCCGCTTACCTTGT 180
|| |||||| |||||||||| ||||||| ||||||||| ||||||||||| ||||||||
Sbjct 136 ATTTATCGACACCGCTTTCGCTATAGACAACACTTACCTTCTCTTCTCCGCCTACCTTGT 195
Query 181 CTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCGTAAGAGCCAAGAATAC 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 196 CTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCGTGAGAGCCAAGAATAC 255
Query 241 GATGAACATCATGCTTACCAACGTTCTTGATGCTGCGGCCGGAGGTCTCTTTTACTATCT 300
||||||||||||||||||||||| ||||| ||||| ||||| |||||||| || |||||
Sbjct 256 TATGAACATCATGCTTACCAACGTCCTTGACGCTGCAGCCGGTGGTCTCTTCTATTATCT 315
Query 301 ATTTGGCTATGCTTTTGCCTTTGGATCTCCGTCCAATGGTTTCATTGGTAAACACTACTT 360
|||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 316 GTTTGGCTACGCCTTTGCCTTTGGATCTCCGTCCAATGGTTTCATCGGTAAACACTACTT 375
Query 361 TGGTCTCAAAGATATCCCCACGGCCACTGCTGATTATTCCAATTTTCTCTACCAATGGGC 420
|||||||||||| |||||||||||| ||||||| || ||||| |||||||||||||||||
Sbjct 376 TGGTCTCAAAGACATCCCCACGGCCTCTGCTGACTACTCCAACTTTCTCTACCAATGGGC 435
Query 421 CTTTGCTATAGCCGCGGCTGGAATCACTAGTGGTTCGATCGCTGAACGGACTCAGTTCGT 480
|||||| || || |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 436 CTTTGCAATCGCTGCGGCTGGAATCACAAGTGGCTCGATCGCTGAACGGACACAGTTCGT 495
Query 481 GGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACCCGGTCGTGTCTCACTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 496 GGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACCCGGTCGTCTCTCACTG 555
Query 541 GTTCTGGTCGGTTGATGGATGGGCCAGTCCGTTCCGGACCGATGGAGATTTGCTTTTCAG 600
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 556 GTTCTGGTCAGTTGATGGATGGGCCAGCCCGTTCCGTACCGATGGAGATTTGCTTTTCAG 615
Query 601 AACCGGAGCGATCGATTTCGCTGGCTCCGGTGTTGTTCATATGGTCGGAGGTATCGCTGG 660
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 616 CACCGGAGCGATAGATTTCGCTGGGTCCGGTGTTGTTCATATGGTCGGAGGTATCGCTGG 675
Query 661 ACTCTGGGGAGCGTTCATTGAAGGACCACGACTCGGCCGGTTCGATAACGGTGGCCGTGC 720
||||||||| ||| |||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 676 ACTCTGGGGTGCGCTCATCGAAGGTCCACGACTTGGCCGGTTCGATAACGGAGGCCGTGC 735
Query 721 CATCGCTCTTCGTGGCCACTCAGCGTCACTTGTTGTCCTTGGAACATTCCTCCTTTGGTT 780
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 736 CATCGCTCTTCGTGGCCACTCGGCGTCACTTGTTGTCCTTGGAACATTCCTCCTCTGGTT 795
Query 781 TGGATGGTACGGATTCAACCCCGGTTCTTTCAACAAGATCCTAGTCACATACCAAACAGG 840
||||||||||||||| ||||||||||| |||||||||||||||||||| ||| | |||||
Sbjct 796 TGGATGGTACGGATTTAACCCCGGTTCCTTCAACAAGATCCTAGTCACGTACGAGACAGG 855
Query 841 AACGTATCAA-GGCCAGTGGAGCGCGGTCGGACGGACGGCCGTCACTACCACCTTAGCCG 899
|| || ||| |||||||||||||||||||||||||| || ||||| || || ||||| |
Sbjct 856 CACATA-CAACGGCCAGTGGAGCGCGGTCGGACGGACAGCTGTCACAACAACGTTAGCTG 914
Query 900 GCTGCACCGCGGCGCTCACGACTCTCTTCGGAAAACGTCTTCTCTCTGGCCATTGGAACG 959
|||||||||||||||| || || || || || |||||||| ||||| || ||||||||||
Sbjct 915 GCTGCACCGCGGCGCTGACAACCCTATTTGGGAAACGTCTACTCTCGGGACATTGGAACG 974
Query 960 TCACCGATGTATGTAACGGTCTCCTCGGAGGGTTTGCAGCAATAACCGGCGGCTGCTCCG 1019
|||| |||||||| ||||| |||||||||||||||||||| ||||| || |||||||| |
Sbjct 975 TCACTGATGTATGCAACGGCCTCCTCGGAGGGTTTGCAGCCATAACTGGTGGCTGCTCTG 1034
Query 1020 TCGTAGAGCCATGGGCAGCGATCATCTGCGGGTTCGTAGCGGCTCTCGTCCTCCTCGGAT 1079
|||| ||||||||||| |||||||||||||||||||| ||||| || |||||||||||||
Sbjct 1035 TCGTTGAGCCATGGGCTGCGATCATCTGCGGGTTCGTGGCGGCCCTAGTCCTCCTCGGAT 1094
Query 1080 GCAACAAGCTCGCGGAGAAACTCAAATACGACGACCCACTCGAGGCAGCACAGCTCCACG 1139
||||||||||||| ||||| ||||||||||||||||| || ||||||||||| || ||||
Sbjct 1095 GCAACAAGCTCGCTGAGAAGCTCAAATACGACGACCCTCTTGAGGCAGCACAACTACACG 1154
Query 1140 GCGGTTGCGGCGCGTGGGGGCTAATTTTTACAGCGCTTTTCGCTGA-GAAAAAGTACTTA 1198
| |||||||| |||||||| ||||| || || || || |||||| | ||||| ||||||
Sbjct 1155 GTGGTTGCGGTGCGTGGGGACTAATATTCACGGCTCTCTTCGCTCAAGAAAA-GTACTTG 1213
Query 1199 AACCAGGTTTATGGCGACAGACCCGGAAGGCCTTACGGTTTGTTCATGGGTGGTGGAGGA 1258
|||||| |||| ||| ||| |||||||||||| |||||||||| ||||| |||||||||
Sbjct 1214 AACCAGATTTACGGCAACAAACCCGGAAGGCCACACGGTTTGTTTATGGGCGGTGGAGGA 1273
Query 1259 AAACTCCTTGGAGCTCAGCTGATTCAAATAATTGTGATCACAGGTTGGGTTAGTGTGACC 1318
||||| |||||||||||||||||||| || ||||||||||| |||||||| |||| ||||
Sbjct 1274 AAACTACTTGGAGCTCAGCTGATTCAGATCATTGTGATCACGGGTTGGGTAAGTGCGACC 1333
Query 1319 ATGGGTACACTTTTCTTTATCCTCAAGAAAATGAAATTATTGCGGATATCATCAGAGGAT 1378
||||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1334 ATGGGGACACTTTTCTTCATCCTCAAGAAAATGAAATTGTTGCGGATATCGTCCGAGGAT 1393
Query 1379 GAGATGGCCGGTATGGATATGACCCGGCACGGTGGTTTTGCTTATATGTACCATGATGAT 1438
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1394 GAGATGGCCGGTATGGATATGACCAGGCACGGTGGTTTTGCTTATATGTACTTTGATGAT 1453
Query 1439 GATGAGTCTCACAAAGCCATTCAGCTTAGAAGAGTTGAGCCAAGATCTCCTTCTCCTTCT 1498
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1454 GATGAGTCTCACAAAGCCATTCAGCTTAGGAGAGTTGAGCCACGATCTCCTTCTCCTTCT 1513
Query 1499 GGTGCTAAAACTATTCCTACTCCGGtttgatttggatttttatttttatt 1548
|||||||| |||| ||||||||||||||||||||||||||| |||||||
Sbjct 1514 GGTGCTAATACTACACCTACTCCGGTTTGATTTGGATTTTTACTTTTATT 1563
> AT4G13505.1 | Symbols: | other RNA | chr4:7858000-7859691 REVERSE
LENGTH=1625
Length=1625
Score = 1816 bits (983), Expect = 0.0
Identities = 1219/1336 (91%), Gaps = 4/1336 (0%)
Strand=Plus/Minus
Query 161 CTCTTCTCCGCTTACCTTGTCTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGT 220
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 CTCTTCTCCGCCTACCTTGTCTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGT 1275
Query 221 TCCGTAAGAGCCAAGAATACGATGAACATCATGCTTACCAACGTTCTTGATGCTGCGGCC 280
||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1274 TCCGTGAGAGCCAAGAATACTATGAACATCATGCTTACCAACGTCCTTGACGCTGCAGCC 1215
Query 281 GGAGGTCTCTTTTACTATCTATTTGGCTATGCTTTTGCCTTTGGATCTCCGTCCAATGGT 340
|| |||||||| || ||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1214 GGTGGTCTCTTCTATTATCTGTTTGGCTACGCCTTTGCCTTTGGATCTCCGTCCAATGGT 1155
Query 341 TTCATTGGTAAACACTACTTTGGTCTCAAAGATATCCCCACGGCCACTGCTGATTATTCC 400
||||| |||||||||||||||||||||||||| |||||||||||| ||||||| || |||
Sbjct 1154 TTCATCGGTAAACACTACTTTGGTCTCAAAGACATCCCCACGGCCTCTGCTGACTACTCC 1095
Query 401 AATTTTCTCTACCAATGGGCCTTTGCTATAGCCGCGGCTGGAATCACTAGTGGTTCGATC 460
|| ||||||||||||||||||||||| || || |||||||||||||| ||||| ||||||
Sbjct 1094 AACTTTCTCTACCAATGGGCCTTTGCAATCGCTGCGGCTGGAATCACAAGTGGCTCGATC 1035
Query 461 GCTGAACGGACTCAGTTCGTGGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTT 520
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GCTGAACGGACACAGTTCGTGGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTT 975
Query 521 TACCCGGTCGTGTCTCACTGGTTCTGGTCGGTTGATGGATGGGCCAGTCCGTTCCGGACC 580
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 974 TACCCGGTCGTCTCTCACTGGTTCTGGTCAGTTGATGGATGGGCCAGCCCGTTCCGTACC 915
Query 581 GATGGAGATTTGCTTTTCAGAACCGGAGCGATCGATTTCGCTGGCTCCGGTGTTGTTCAT 640
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 914 GATGGAGATTTGCTTTTCAGCACCGGAGCGATAGATTTCGCTGGGTCCGGTGTTGTTCAT 855
Query 641 ATGGTCGGAGGTATCGCTGGACTCTGGGGAGCGTTCATTGAAGGACCACGACTCGGCCGG 700
||||||||||||||||||||||||||||| ||| |||| ||||| |||||||| ||||||
Sbjct 854 ATGGTCGGAGGTATCGCTGGACTCTGGGGTGCGCTCATCGAAGGTCCACGACTTGGCCGG 795
Query 701 TTCGATAACGGTGGCCGTGCCATCGCTCTTCGTGGCCACTCAGCGTCACTTGTTGTCCTT 760
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 794 TTCGATAACGGAGGCCGTGCCATCGCTCTTCGTGGCCACTCGGCGTCACTTGTTGTCCTT 735
Query 761 GGAACATTCCTCCTTTGGTTTGGATGGTACGGATTCAACCCCGGTTCTTTCAACAAGATC 820
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 734 GGAACATTCCTCCTCTGGTTTGGATGGTACGGATTTAACCCCGGTTCCTTCAACAAGATC 675
Query 821 CTAGTCACATACCAAACAGGAACGTATCAA-GGCCAGTGGAGCGCGGTCGGACGGACGGC 879
|||||||| ||| | ||||| || || ||| |||||||||||||||||||||||||| ||
Sbjct 674 CTAGTCACGTACGAGACAGGCACATA-CAACGGCCAGTGGAGCGCGGTCGGACGGACAGC 616
Query 880 CGTCACTACCACCTTAGCCGGCTGCACCGCGGCGCTCACGACTCTCTTCGGAAAACGTCT 939
||||| || || ||||| ||||||||||||||||| || || || || || ||||||||
Sbjct 615 TGTCACAACAACGTTAGCTGGCTGCACCGCGGCGCTGACAACCCTATTTGGGAAACGTCT 556
Query 940 TCTCTCTGGCCATTGGAACGTCACCGATGTATGTAACGGTCTCCTCGGAGGGTTTGCAGC 999
||||| || |||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 555 ACTCTCGGGACATTGGAACGTCACTGATGTATGCAACGGCCTCCTCGGAGGGTTTGCAGC 496
Query 1000 AATAACCGGCGGCTGCTCCGTCGTAGAGCCATGGGCAGCGATCATCTGCGGGTTCGTAGC 1059
||||| || |||||||| ||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 495 CATAACTGGTGGCTGCTCTGTCGTTGAGCCATGGGCTGCGATCATCTGCGGGTTCGTGGC 436
Query 1060 GGCTCTCGTCCTCCTCGGATGCAACAAGCTCGCGGAGAAACTCAAATACGACGACCCACT 1119
||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 435 GGCCCTAGTCCTCCTCGGATGCAACAAGCTCGCTGAGAAGCTCAAATACGACGACCCTCT 376
Query 1120 CGAGGCAGCACAGCTCCACGGCGGTTGCGGCGCGTGGGGGCTAATTTTTACAGCGCTTTT 1179
||||||||||| || ||||| |||||||| |||||||| ||||| || || || || ||
Sbjct 375 TGAGGCAGCACAACTACACGGTGGTTGCGGTGCGTGGGGACTAATATTCACGGCTCTCTT 316
Query 1180 CGCTGA-GAAAAAGTACTTAAACCAGGTTTATGGCGACAGACCCGGAAGGCCTTACGGTT 1238
|||| | ||||| |||||| |||||| |||| ||| ||| |||||||||||| ||||||
Sbjct 315 CGCTCAAGAAAA-GTACTTGAACCAGATTTACGGCAACAAACCCGGAAGGCCACACGGTT 257
Query 1239 TGTTCATGGGTGGTGGAGGAAAACTCCTTGGAGCTCAGCTGATTCAAATAATTGTGATCA 1298
|||| ||||| |||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 256 TGTTTATGGGCGGTGGAGGAAAACTACTTGGAGCTCAGCTGATTCAGATCATTGTGATCA 197
Query 1299 CAGGTTGGGTTAGTGTGACCATGGGTACACTTTTCTTTATCCTCAAGAAAATGAAATTAT 1358
| |||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 196 CGGGTTGGGTAAGTGCGACCATGGGGACACTTTTCTTCATCCTCAAGAAAATGAAATTGT 137
Query 1359 TGCGGATATCATCAGAGGATGAGATGGCCGGTATGGATATGACCCGGCACGGTGGTTTTG 1418
|||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 136 TGCGGATATCGTCCGAGGATGAGATGGCCGGTATGGATATGACCAGGCACGGTGGTTTTG 77
Query 1419 CTTATATGTACCATGATGATGATGAGTCTCACAAAGCCATTCAGCTTAGAAGAGTTGAGC 1478
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 76 CTTATATGTACTTTGATGATGATGAGTCTCACAAAGCCATTCAGCTTAGGAGAGTTGAGC 17
Query 1479 CAAGATCTCCTTCTCC 1494
|| |||||||||||||
Sbjct 16 CACGATCTCCTTCTCC 1
> AT3G24300.1 | Symbols: AMT1;3, ATAMT1;3 | ammonium transporter
1;3 | chr3:8805631-8807388 REVERSE LENGTH=1758
Length=1758
Score = 837 bits (453), Expect = 0.0
Identities = 1113/1425 (78%), Gaps = 71/1425 (5%)
Strand=Plus/Plus
Query 62 CCCAATGCCACGGAGGCTGCCAACTACATCTGTGGCCAGCTAAGCGTCGTCGACAACAAG 121
||||| ||||||| ||| ||| ||||||| || ||||| || || ||| ||||||||
Sbjct 86 CCCAACGCCACGGCGGCGGCCGACTACATTTGCGGCCAATTAGGCACCGTTAACAACAAG 145
Query 122 TTCATCGACGCCGCTTTCGCCATAGACACCACTTACCTCCTCTTCTCCGCTTACCTTGTC 181
|||| ||| || || ||||||||||||| ||| |||||||||||||| || |||||||||
Sbjct 146 TTCACCGATGCAGCCTTCGCCATAGACAACACCTACCTCCTCTTCTCTGCCTACCTTGTC 205
Query 182 TTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCGTAAGAGCCAAGAATACG 241
||| | |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct 206 TTCGCCATGCAGCTCGGCTTCGCTATGCTTTGTGCTGGTTCTGTTAGAGCCAAGAATACG 265
Query 242 ATGAACATCATGCTTACCAACGTTCTTGATGCTGCGGCCGGAGGTCTCTTTTACTATCTA 301
|||||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||||||
Sbjct 266 ATGAACATCATGCTTACCAATGTCCTTGACGCTGCAGCCGGAGGACTCTTCTACTATCTC 325
Query 302 TTTGGCTATGCTTTTGCCTTTGGATC-TCCGTCC-AATGGTTTCATTGGTAA-ACACTAC 358
||||| || || |||||||||||| ||| ||| || |||| |||||| || |||| ||
Sbjct 326 TTTGGTTACGCCTTTGCCTTTGGAGGATCC-TCCGAAGGGTT-CATTGG-AAGACACAAC 382
Query 359 TTTGGTCTCAAAGA-TATCCCCACGGCCACTGCTGATTATTCCAATT-TTC-TCTACCAA 415
|||| ||| | ||| | ||| || |||| |||||||| || || ||| ||||||||
Sbjct 383 TTTGCTCTTAGAGACTTTCCG-ACTCCCACAGCTGATTACTCT--TTCTTCCTCTACCAA 439
Query 416 TGGGCCTTTGCTATAGCCGCGGCTGGAATCACTAGTGGTTCGATCGCTGA-ACGGACTCA 474
||||| || || || || || ||||||||||| |||||||||||||| || | |||||||
Sbjct 440 TGGGCGTTCGCAATCGCGGCCGCTGGAATCACAAGTGGTTCGATCGCAGAGA-GGACTCA 498
Query 475 GTTCGTGGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACCCGGTCGTGTC 534
||||||||||||| | || || || |||||||||||||| |||||||||||||| || ||
Sbjct 499 GTTCGTGGCTTACTTGATATACTCTTCTTTCTTAACCGGATTTGTTTACCCGGTTGTCTC 558
Query 535 TCACTGGTTCTGGTCGGTTGATGGATGGGCCAGTCCGTTCCGGACCGATGGA-GATTTGC 593
||||||||| ||||| ||||||||||||||||| || || | | ||| ||| |
Sbjct 559 TCACTGGTTTTGGTCCCCGGATGGATGGGCCAGTCCCTTTCGTTCAGC-GGATGATC-GT 616
Query 594 TT-TTCAGAACCGGAGCGATCGA-TTTCGCTGGCTCCGGTGTTGTTCATATGGTCGGAGG 651
|| || || |||||||| || || ||| |||||||||||||||||||| ||||| || ||
Sbjct 617 TTGTTTAGCACCGGAGCCATTGACTTT-GCTGGCTCCGGTGTTGTTCACATGGTTGGTGG 675
Query 652 TATCGCTGGACTCTGGGGAGCG-TTCATTGAAGGACCACGAC-TCGGCCGGTTCGATAAC 709
|| || || | ||||| || || |||||||| || || | | || |||||||| ||
Sbjct 676 CATAGCAGGTTTATGGGGTGCTCTT-ATTGAAGGTCCTCGTCGT-GGTCGGTTCGAGAAA 733
Query 710 GGTGGCCGTGCCATCGCTCTTCGTGGCCACTCAGCGTCACTTGTTGTCCTT-GGAACATT 768
||||| || || || ||||| || |||||||| || || || || ||| || ||||| ||
Sbjct 734 GGTGGTCGCGCTATTGCTCTGCGCGGCCACTCTGCCTCGCTAGTAGTC-TTAGGAACCTT 792
Query 769 CCTCCTTTGGTTTGGATGGTACGGATTCAACCCCGGTTCTTTCAAC-AAGATCCTAGT-C 826
|||||| |||||||||||||| || |||||||||||||| |||| | ||||| || || |
Sbjct 793 CCTCCTATGGTTTGGATGGTATGGTTTCAACCCCGGTTCCTTCA-CTAAGATACTCGTTC 851
Query 827 ACATACCAAA-CAGGAACGTATCAA-GGCCAGTGGAGCGCGG-TCGGACGGACGGCCGTC 883
| || || | || | | | | ||||| ||||||| | |||| || || || ||
Sbjct 852 -CGTAT-AATTCTGGTTCCAA-CTACGGCCAATGGAGCG-GAATCGGCCGTACAGCGGTT 907
Query 884 A-CTACCAC-CT-TAGCCGGCTGCACCGCGGCGCTCACGACTCTCTTCGGAAAACGTCTT 940
| | ||||| || | | || ||||| || || || || || ||||| || ||||||||
Sbjct 908 AAC-ACCACACTCT--CAGGATGCACAGCAGCTCTAACCACACTCTTTGGTAAACGTCTC 964
Query 941 CTCTCTGGCCATTGGAACGTCACCGATGTATGTAACGG-TCTCCTCGGAGGGTTTGCAGC 999
|| || ||||| |||||||| || || || || ||||| | | ||||| |||||||| ||
Sbjct 965 CTATCAGGCCACTGGAACGTAACGGACGTTTGCAACGGGT-TACTCGGTGGGTTTGCGGC 1023
Query 1000 AATAACCGGC-GGCTGCTCCGTCGTAGAGCCATGGGCAGCGATCATCTGCGGGTTCGTAG 1058
||||||| | || ||||||||||||||||||||||||||||| | ||||| ||| | |
Sbjct 1024 CATAACCG-CAGGTTGCTCCGTCGTAGAGCCATGGGCAGCGATTGTGTGCGGCTTCATGG 1082
Query 1059 CGGCTCTCGTCCTCCTCGGATGCAACAAGCTCGCGGAGAAACT-CAAATACGACGACCCA 1117
| || ||||||| ||||||||||||||||||||||| | ||| || || || |||
Sbjct 1083 CTTCTGTCGTCCTTATCGGATGCAACAAGCTCGCGGAGCTTGTACAA-TATGATGATCCA 1141
Query 1118 CTCGAGGCAGCACAGCTCCACGGCGGTTGCGGCGCGTGGGGGCTAATTTTTACAGCGCTT 1177
||||||||||| || || || || || || |||||||||||| | || || || | ||
Sbjct 1142 CTCGAGGCAGCCCAACTACATGGAGGGTGTGGCGCGTGGGGGTTGATATTCGTAG-GATT 1200
Query 1178 -TTCGCTGA-GAAAAAGTA-CTTAAACCAGGTTTATGGCGACAGACCCGG-AAGGCCTTA 1233
|| || | || || ||| || |||| |||||||||||| || ||||| |||||| ||
Sbjct 1201 GTTTGCCAAAGAGAA-GTATCT-AAACGAGGTTTATGGCGCCAC-CCCGGGAAGGCCATA 1257
Query 1234 CGGTTTGTTCATGGGTGGTGGAGGAAAACTCCTTGG-AGCTCAGCTGATTCAAATAATTG 1292
|| | || ||||| || ||||| || || |||| ||| || || |||||||| |||
Sbjct 1258 TGGACTATTTATGGGCGGAGGAGGGAAGCTG-TTGGGAGCACAATTGGTTCAAATACTTG 1316
Query 1293 TGATCACAGGTTGGGTTAGTGTGACCATGGGTACACTTTTCTTTATCCTCAAGAAAA-TG 1351
|||| ||| |||||||||| || ||||| ||||| ||||| |||||||| || |
Sbjct 1317 TGATTGTAGGATGGGTTAGTGCCACAATGGGAACACTCTTCTTCATCCTCAA-AAGGCTC 1375
Query 1352 AAAT-TA-TTGCGGATATCATCAG-AGGATGAGATGGCC-GGTATGGATATGACCCGGCA 1407
|| | | || |||| || || || |||| ||| | || ||||||||||| || ||
Sbjct 1376 AA-TCTGCTTA-GGATCTCGG-AGCAGCATGAAATG-CAAGGGATGGATATGACACGTCA 1431
Query 1408 CGGTGGTTTTGCTTATATGTACCATGAT---GATGATGAGTCTCA 1449
|||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 1432 CGGTGGCTTTGCTTATATCTACCATGATAATGATGATGAGTCTCA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78915256740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5