BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484195
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02860.1 | Symbols: SUT2, ATSUC3, SUC3, ATSUT2 | sucrose tra... 3234 0.0
> AT2G02860.1 | Symbols: SUT2, ATSUC3, SUC3, ATSUT2 | sucrose transporter
2 | chr2:828352-832455 REVERSE LENGTH=2138
Length=2138
Score = 3234 bits (1751), Expect = 0.0
Identities = 2019/2146 (94%), Gaps = 27/2146 (1%)
Strand=Plus/Plus
Query 2 AAAATCGATTTCATCAAACATATTCACGCGCCCGAATTTGACTCTCCGATCATCGTCTCC 61
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 9 AAAATCGATTTCATCAAA-ATATTCACCCGCCCGAATTTGACTCTCCGATCATCGTCTCC 67
Query 62 GAATCTAGATCGACGAGAACAAAACCCTCGAAACCTAAATCGGAATGAGAAATTAGA-TT 120
|||||||||||||||||| ||||||||| |||| |||||||||||||||||||| || ||
Sbjct 68 GAATCTAGATCGACGAGATCAAAACCCTAGAAATCTAAATCGGAATGAGAAATT-GATTT 126
Query 121 TGATACGAATTAGGGATC--TGTGTTGAGGACGATGAGTGACTCGGTGTCGATCTCGGTT 178
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TGATACGAATTAGGGATCTGTGTGTTGAGGACGATGAGTGACTCGGTGTCGATCTCGGTT 186
Query 179 CCGTATAGGAATTTGAGGAAGGAGATTGAACTTGAGACGGTGACGAAGCATCATCAAGAT 238
||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||| |
Sbjct 187 CCGTATAGGAATTTGAGGAAGGAAATTGAACTTGAGACGGTCACCAAGCATCGTCAAAAC 246
Query 239 GGATCTGGTTCATCGTCCTTCTC----T-T-CTTCTCCTTTGAATCACCCTGATGT-GGC 291
| ||||||||| ||||| ||||| | | ||||||||| |||||| ||||| | |||
Sbjct 247 GAATCTGGTTCTTCGTCGTTCTCTGAATCTGCTTCTCCTTCGAATCATTCTGAT-TCGGC 305
Query 292 TGATGGTGAATCTGTGTCGAAGAATTGTAGCTTAGTAACGTTGGTTCTTAGTTGTACAGT 351
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 306 TGATGGTGAATCTGTGTCGAAGAATTGTAGTTTAGTGACGTTGGTTCTTAGTTGTACAGT 365
Query 352 CGCTGCTGGAGTTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTCACTCCTTATATTCA 411
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 366 TGCCGCTGGAGTTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTTACTCCTTATATTCA 425
Query 412 GACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTATGCGGCCCAATTACAGG 471
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 426 GACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCAATTACAGG 485
Query 472 CCTTGTGGTCCAGCCTTTTGTTGGCATTTGGAGTGATAAATGTACTTCAAAGTATGGAAG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 CCTTGTGGTCCAGCCTTTTGTTGGCATTTGGAGTGATAAATGTACTTCAAAGTATGGAAG 545
Query 532 AAGACGACCATTTATTCTCGTTGGATC-TCTCATGATCTCAATATCAGTGATAATAATCG 590
|||||||||||||||||| |||||||| | |||||||||||||| |||||||||||||||
Sbjct 546 AAGACGACCATTTATTCTAGTTGGATCAT-TCATGATCTCAATAGCAGTGATAATAATCG 604
Query 591 GGTTTTCTGCAGACATTGGGTATCTGTTAGGAGATACAAAGGAACATTGCAGTACTTTCA 650
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 605 GATTTTCTGCAGACATTGGGTATCTGTTAGGAGATTCAAAGGAACATTGCAGTACTTTCA 664
Query 651 AAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTTTTGGTTGTTGGATCTAG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 AAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTTTTGGTTGTTGGATCTAG 724
Query 711 CGAACAATACAGTACAGGGACCTGCTCGTGCTCTTCTAGCTGATCTATCAGGTCCTGATC 770
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 CAAACAATACAGTACAGGGACCTGCTCGTGCTCTTCTAGCTGATCTATCAGGTCCTGATC 784
Query 771 AGCGGAATACTGCAAATGCTGTGTTCTGCTTGTGGATGGCTATTGGGAATATCCTTGGGT 830
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 785 AGCGGAATACTGCAAATGCTGTGTTCTGCTTGTGGATGGCTATTGGGAACATCCTTGGGT 844
Query 831 TTTCTGCTGGTGCTAGTGGACGTTGGCAAGAATGGTTCCCTTTCCTAACTAGTAGAGCAT 890
||||||| |||||||| ||| |||||||||||||||||||| |||||||||||||||
Sbjct 845 TTTCTGCCGGTGCTAGCGGAAAATGGCAAGAATGGTTCCCTTTTTTAACTAGTAGAGCAT 904
Query 891 GTTGTGCTGCATGTGGAAATCTCAAAGCAGCGTTTCTTCTTGCAGTGGTCTTTCTCACTA 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GTTGTGCTGCATGTGGAAATCTCAAAGCAGCGTTTCTTCTTGCAGTGGTCTTTCTCACTA 964
Query 951 TATGTACTCTTGTCACTATCTATTTTGCTAAAGAGATTCCTTTCACAAGTAACAAGCCCA 1010
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 965 TATGTACTCTTGTCACAATCTATTTTGCTAAAGAGATTCCTTTTACAAGCAACAAGCCCA 1024
Query 1011 CCCGCATACCAGATTCTGCACCTTTGTTGGATGATCTCCAGTCTAAAGGCCTTGAGCATT 1070
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1025 CCCGCATACAAGATTCTGCACCTTTGTTGGATGATCTCCAGTCCAAAGGCCTTGAGCATT 1084
Query 1071 CAAAATTGAATCATGGTACTGCCAATGGAATCAAGTATGAGAGAGTGGAACGTGATGTGG 1130
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1085 CAAAATTAAATAATGGTACTGCCAATGGAATCAAGTATGAGAGAGTGGAACGTGATACGG 1144
Query 1131 ATGTACAGCTTGGCAATTCAAAGAACGAGCATCAAGATGAGAACTACGTTGATGGCCCTG 1190
||| |||| ||||||||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct 1145 ATGAACAGTTTGGCAATTCAGAGAATGAGCATCAAGATGAGACCTACGTTGATGGCCCTG 1204
Query 1191 GATCTGTTCTAGTGAATTTGCTAACTAGTTTAAGACATTTGCCACCGGCTATGCACTCAG 1250
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1205 GATCTGTTTTAGTGAATTTGCTAACTAGTTTAAGGCATTTGCCACCGGCTATGCACTCAG 1264
Query 1251 TTCTTATTGTCATGGCTCTTACATGGTTATCGTGGTTCCCCTTCTTTTTGTTCGATACAG 1310
||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1265 TTCTTATCGTCATGGCTCTTACATGGTTATCCTGGTTCCCCTTCTTTCTGTTCGATACAG 1324
Query 1311 ATTGGATGGGAAGAGAAGTTTACCACGGGAATCCAACAGGAGATAGTTTGCATGTGGAAC 1370
||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct 1325 ATTGGATGGGAAGAGAAGTTTACCATGGGGATCCAACAGGAGATAGTTTGCATATGGAAC 1384
Query 1371 TCTATGATCAAGGTGTACGTGAAGGTGCACTTGGTTTGCTACTAAACTCTGTTGTTCTTG 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 TCTATGATCAAGGTGTACGTGAAGGTGCACTTGGTTTGCTACTAAACTCTGTTGTTCTTG 1444
Query 1431 GGATCAGCTCGTTTCTCATTGAACCAATGTGTCAGCGGATGGGTGCAAGGGTTGTATGGG 1490
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1445 GGATCAGCTCATTTCTCATTGAACCAATGTGTCAGCGGATGGGTGCTCGGGTTGTATGGG 1504
Query 1491 CTCTGAGCAATTTTACTGTATTTGCATGCATGGCGGGAACAGCTGTAATTAGCTTGATGT 1550
|| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1505 CTTTGAGCAATTTTACTGTATTTGCCTGCATGGCGGGAACAGCTGTAATCAGCTTGATGT 1564
Query 1551 CTCTCGGTGATTACAAAAATGGAGTCGAATTCATAATGCATGGAAACGAAACAACAAGAA 1610
||||| ||||| ||||||||||| | |||| |||||||| ||||||||||||||||||||
Sbjct 1565 CTCTCAGTGATGACAAAAATGGAATTGAATACATAATGCGTGGAAACGAAACAACAAGAA 1624
Query 1611 CCGCAGCTGTAGTCGTCTTTGCACTCCTTGGTTTTCCTCTAGCTATCACATACAGTGTTC 1670
||||||| ||| |||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1625 CCGCAGCCGTAATCGTTTTTGCACTCCTTGGTTTTCCCCTAGCTATCACATACAGTGTCC 1684
Query 1671 CTTTCTCTGTCACAGCAGAAGTCACTGCTGATTCCGGTGGCGGTCAAGGTTTGGCTATAG 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 CTTTCTCTGTCACAGCAGAAGTCACTGCTGATTCCGGTGGCGGTCAAGGTTTGGCTATAG 1744
Query 1731 GAGTGTTGAACCTCGCAATCGTTATTCCCCAGATGATAGTATCACTTGGAGCGGGTCCAT 1790
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 GAGTGTTGAATCTCGCAATCGTTATTCCCCAGATGATAGTATCACTTGGAGCGGGTCCAT 1804
Query 1791 GGGATCAATTGTTTGGAGGAGGAAATTTACCGGCGTTTGTTTTGGCGTCTGTTGCTGCTT 1850
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1805 GGGATCAATTGTTTGGAGGAGGAAACTTACCGGCGTTTGTTTTGGCGTCTGTTGCTGCTT 1864
Query 1851 TTGCTGCTGGAGTTATCGCCCTGCAAAGGCTTCCGACGCTATCTAGTTCTTTCAAGTCCA 1910
| |||||||||||||| || ||||||||||||| |||||||| ||||||||||||||||
Sbjct 1865 TCGCTGCTGGAGTTATTGCATTGCAAAGGCTTCCCACGCTATCGAGTTCTTTCAAGTCCA 1924
Query 1911 CTGGTTTCCACATCGGGTAAAATCTTTTTACCGGATAGACCTAAAATTCAGATTTAGATC 1970
| |||||||||||||| |||||||||| |||| | |||| ||||||||| | |||||||
Sbjct 1925 CCGGTTTCCACATCGGCTAAAATCTTTATACC--ACAGACATAAAATTCACAGTTAGATC 1982
Query 1971 CATTCGATTCTTTTTGACCATGTTCTCCTCTCGGCGTATATGTATGTAGGTTTTGTACAT 2030
| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1983 TACCCGATTCTTTTTGACCACGTTCTCCTCTCGGCGTATATGTAAGTAGGTTTTGTACAT 2042
Query 2031 TTAGTTTTGTAATATGGTATACACAGCAATGTGACTCTAAATTTACAGTACGATCTCTTC 2090
||||||| | ||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 2043 CTAGTTTTCTTATATGTTATACACAGCAATGTGACTCTAAATTTACAGTACC-TCTCTTC 2101
Query 2091 TCACTTAATATGGTTCTAATATATCTTCGTTATTTTGAATCACTTT 2136
|||| || | |||||||||||||||||||||||||||||
Sbjct 2102 TCACGTA----G-----AATATATCTTCGTTATTTTGAATCACTTT 2138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105923149950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5