BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484196
Length=2169
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02870.1 | Symbols: | Galactose oxidase/kelch repeat superf... 3094 0.0
AT1G14330.1 | Symbols: | Galactose oxidase/kelch repeat superf... 878 0.0
> AT2G02870.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:837812-840129 FORWARD LENGTH=2190
Length=2190
Score = 3094 bits (1675), Expect = 0.0
Identities = 2058/2226 (92%), Gaps = 93/2226 (4%)
Strand=Plus/Plus
Query 1 aagagagagaaaaagaaagaaagaaTTGTTCCTCTC-AAAGATTTTAACTTTGAGCTCTC 59
|||||||||| | ||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 1 AAGAGAGAGAGAGAGAAAAAAAGAATTGTTCCTCTCAAAAGATTTTAACTTTGAG--CTC 58
Query 60 TCTGAGAAACCAAAGCTTCACTCTGATTCGcagagcgaatcaaaagagacgacacag--a 117
||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 59 TCTGAGAAACCAAAGCTTCACTCTGATTCGC-TCTCGAATCAAAAGAGACGACAGAGAAA 117
Query 118 gaagaagaagaaacgcgaagaacagaaacagCTCTCTTAAGCTCTTCttaattattatta 177
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 118 GAAGAAGAAGAAACGCGAAGAACAGAAACAGCTCTCTTAAGCTTTTCTTAATTATTATTA 177
Query 178 ttaattattattTCTCTCTTCTTAATCCCTAAATCTCCAGATGGAATCATGAACCAGATC 237
| |||| || |||| | ||||||||| |||||||| |||||| ||||||||||||||
Sbjct 178 T-AATT-TT----CTCT-T-CTTAATCCCCAAATCTCCTGATGGATTCATGAACCAGATC 229
Query 238 GGGATCGAAAGATGATTTGAGTTTCCGGGTTTGATTCTTTTTCCCCTTTTTGTGAAATTG 297
|| | |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 230 GG---C------TGATTTGAGTTTCCGGGTTTGATT-TTTTTCCC-TTTTTGTGAAATTG 278
Query 298 GGTTGGAATCTGGAGATCTGGATCTTGA-AAAGGTTGAAACTTTACGTGT-CTT--TG-- 351
|||||||||||||||||||||||||| | |||| | |||||||||||||| ||| ||
Sbjct 279 GGTTGGAATCTGGAGATCTGGATCTT-ATAAAGCTGGAAACTTTACGTGTGCTTGATGAA 337
Query 352 --G-TGGTG-TT-G---ATT--TT-G-T--G-A--TT-G--G--TT---AATTTGGGTTT 386
| | || || | ||| || | | | | || | | || |||||||||||
Sbjct 338 CCGATTTTGATTAGGTGATTGGTTAGATTCGGAAATTTGAAGACTTGTTAATTTGGGTTT 397
Query 387 GGGATTGGGATTGATCTGAAAATTTGTTGTCTTTGGAAGAAATGTTGGAAGATCGATCAC 446
||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 398 GGGATTGGGATTGATCTGAAAATTTGTAGTTTTTGGAAGATATGTTGGAAGATCGATCAC 457
Query 447 CAGATTCGTGTTTGATTACAAGGGTTTTCTCAAGCTCTCGTCTTTCTGAATCAAACTGGT 506
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 CAGATTCGTGTTTGAGTACAAGGGTTTTCTCAAGCTCTCGTCTTTCTGAATCAAACTGGT 517
Query 507 CTAAGTCTTACATGTATCCAGAGGATGATGATAAGCTCG--GG-AATGGTAAAAGACCTT 563
|||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||
Sbjct 518 CTAACTCTTACATGTATCCAGAGGATGATGATAAGCTCCTCGGTAATGGTAAAAGAGCTT 577
Query 564 TGGAGGTTGTTGGTGAGATTAGACAGACCAAATCACTTAAATTAATGGGTTTTTCTATTA 623
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 578 TGGAGGTTGTTGGTGAGGTTAGACAGACCAAATCACTTAAATTAATGGGTTTTTCGATTA 637
Query 624 -CTTATGATAGCGATTCATCTGACTATTCATTGAGTGGTGGGGAGGAGCAAGCAGATGCT 682
|| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 638 TCT-ATGATAGCGATTCTTCTGACTATTCATTGAGTGGTGGGGAGGAGCAAGCTGATGCT 696
Query 683 G-TGATTGGTGATGGCTCATCGTCGAGGCAGGAGCAAGAACA--A-TCTGATTCTAATGA 738
| | ||||||||||||||||| || ||||||||||||||||| | ||||||| ||||||
Sbjct 697 GCT-ATTGGTGATGGCTCATCATCAAGGCAGGAGCAAGAACAGCAATCTGATTTTAATGA 755
Query 739 CAATGGTGGTGATTCTACGGATTCGCATTCTCTTATCAATGAGATTGGGAGGGACAATTC 798
|||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 756 CAATGGTGGTGATTCTTCGGATTCTCACTCTCTTATCAATGAGATTGGGAGGGACAATTC 815
Query 799 GATTGACTGTTTGATCCGCTGCTCGAGGTCTGATTATGGTTCAATTGCTTCTTTGAACCG 858
||| |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 816 GATCGACTGTTTGATCCGTTGCTCGAGGTCTGATTATGGTTCTATTGCTTCCTTGAACCG 875
Query 859 GAATTTCCGTTCTTTGGTAAAGAGTGGAGAGATTTATAGATTAAGGCGACAAAGCGGGTT 918
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 876 GAATTTCCGTTCTTTGGTAAAGAGTGGAGAGATTTATAGATTAAGGCGACAAAACGGGTT 935
Query 919 TGTTGAACATTGGGTTTACTTCTCTTGCCAGCTCTTGGAATGGGTTGCGTTCGATCCTGT 978
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 936 TGTTGAACATTGGGTTTACTTCTCTTGCCAGCTCTTGGAATGGGTTGCGTTTGATCCTGT 995
Query 979 CGAGAGAAGGTGGATGCAGTTACCAACTATGCCTTCCAGTGTTACCTTCATGTGTGCCGA 1038
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 996 TGAGAGAAGGTGGATGCAGTTGCCAACTATGCCTTCCAGTGTTACCTTCATGTGTGCAGA 1055
Query 1039 TAAGGAGTCTCTGGCCGTTGGGACGGATCTGCTTGTCTTAGGAAAAGATGCTT---CTTC 1095
||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||
Sbjct 1056 TAAGGAGTCTCTGGCCGTTGGGACGGACCTGCTTGTCTTAGGAAAAGATGATTTTTCTTC 1115
Query 1096 TCATGTAATATACAGATACAGTCTACTGACTAATTCTTGGTCTTCTGGTATGAAGATGAA 1155
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1116 TCATGTAATATACAGATACAGTCTACTCACTAATTCTTGGTCTTCTGGTATGAAGATGAA 1175
Query 1156 CTCTCCGAGGTGTTTGTTTGGATCCGCGAGCCTTGGAGAGATTGCTATATTTGCTGGTGG 1215
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1176 CTCTCCGAGGTGTTTGTTTGGATCCGCGAGCCTTGGAGAGATTGCTATATTCGCTGGTGG 1235
Query 1216 ATGTGATTCCCAGAGAAAGACTCTTGATTTTGCGGAAATGTATAATTCTGAGCTTCAAAC 1275
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1236 ATGTGATTCCCAGGGAAAGATTCTTGATTTTGCGGAAATGTATAATTCTGAGCTTCAAAC 1295
Query 1276 TTGGATAACTCTTCCAAGGATGAACAAACCGAGGAAGATGTGTTCGGGTGTTTTTATGGA 1335
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1296 TTGGATAACTCTTCCAAGGATGAACAAACCGAGGAAGATGTGTTCGGGAGTTTTTATGGA 1355
Query 1336 TGGGAAGTTCTATGTAATTGGAGGAATCGGTGGTGCTGATTCTAAAGTCTTGACCTGCGG 1395
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1356 CGGGAAGTTCTATGTAATTGGAGGAATCGGTGGTGCTGATTCTAAAGGCTTGACCTGCGG 1415
Query 1396 TGAAGAATATGATTTGGAGACCAAGAAATGGACTCAAATCCCTGACTTGTCGCCTCCAAG 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 TGAAGAATATGATTTGGAGACCAAGAAATGGACTCAAATCCCTGACTTGTCGCCTCCAAG 1475
Query 1456 AAGCCGTGCTGATCAAGCTGATATGTCACCAGCA-CAAGAAGCACCGCCTCTTGTTGCGG 1514
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1476 AAGCCGTGCTGATCAAGCTGATATGTCACCAGCAGCG-GAAGCACCGCCTCTTGTTGCGG 1534
Query 1515 TTGTGAATAACCAATTGTACGCTGCTGATCACGCCGATATGGAAGTGAGGAAGTATGATA 1574
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1535 TTGTGAATAACCAATTATACGCTGCTGATCACGCCGATATGGAAGTGAGGAAGTACGATA 1594
Query 1575 AGGAGAATAAGAAATGGTTAACTGTTGGAAGATTGCCTGAAAGAGCTGGCTCGGTTAACG 1634
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1595 AGGAGAATAAGAAGTGGTTAACTGTTGGAAGATTGCCTGAAAGAGCTGGCTCGGTAAACG 1654
Query 1635 GATGGGGACTTGCTTTTAGAGCTTGTGGGGAGCGGTTAATCGTTATTGGTGGACCGAAGT 1694
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1655 GATGGGGACTTGCTTTTAGAGCTTGTGGAGAGCGGTTAATTGTTATTGGTGGACCGAAGT 1714
Query 1695 ACTCAGGAGGTGGGTTCATAGAGCTGAATTCTTGGATACCGAGCGACGGTGGTCCACCGC 1754
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1715 GCTCAGGAGGTGGTTTCATAGAGCTAAATTCTTGGATACCGAGCGACGGTGGTCCACCTC 1774
Query 1755 AGTGGACATTGCTTGACAGGAAACATTCTCCTAATTTTGTATACAATTGCGCAGTGATGG 1814
|||||||| | |||||||||||||||||||||| ||| ||||||||||| ||||||||||
Sbjct 1775 AGTGGACACTACTTGACAGGAAACATTCTCCTACTTTCGTATACAATTGTGCAGTGATGG 1834
Query 1815 GTTGCTAAAAGAACACACATTCATAATACTAC---TATCGATTTGAAGACCCTCCAGATT 1871
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1835 GTTGCTAAAAGAACACACATTCATAATACTACGACTATCCATTTGAAGACCCTCCAGATT 1894
Query 1872 CTTGTTGATGGGTTTTCGCTCACACGTCAAAAGACACCATTGAAGGTCCCAAGCTCCAAC 1931
|||||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 1895 CTTGTTGATGGGTTTTAGCTTACAAGTCAAAAGACACCATTGAAGGTCCCACGCTCCAAC 1954
Query 1932 CTTTATGCTTCTTCTTC--CTT----ATTTGTTTCCCTTACAAAATTTTCAATTTGAATA 1985
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1955 CTTTATGCTTCTTCTTCTTCTTCCTTATTTGTTTCCCTTACAAAATTTTCAATTTGAATA 2014
Query 1986 CAATCATCTCTGTATTGTTAGAAACCAGACAAA-GTCCCCAGGAGATTCCACaaaaaaaa 2044
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 2015 CAATCATCTCTGTATTGTTAGAAACCAGACAAAAGTCCCAAGGAGATTCCA-AAAAAAAA 2073
Query 2045 gaaagaaaaaaaaaaaaaaaaCTGAAACAGGTTTATTATAATAAGTTAGTTAAAAATTGA 2104
|| |||||||||||| ||||||||||||||| | | |||||| ||||||| ||||
Sbjct 2074 -AAGGAAAAAAAAAAA-----CTGAAACAGGTTTAT-A-A-TAAGTTCGTTAAAAGTTGA 2124
Query 2105 AGCTTTTTAGAGTTTGCCAGATCTGGTTAACATTGTTGTATGTGTTTT-AATCAAATTTG 2163
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2125 AGCTTTTTAGAGTTTGCCAGATCTGGTTAACATTGTTGTATGTGTTTTTAATCAAATTTG 2184
Query 2164 TTTTCT 2169
||||||
Sbjct 2185 TTTTCT 2190
> AT1G14330.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:4890118-4892251 REVERSE LENGTH=2134
Length=2134
Score = 878 bits (475), Expect = 0.0
Identities = 918/1126 (82%), Gaps = 54/1126 (5%)
Strand=Plus/Plus
Query 716 CAAGAACAATCTGATTCTAATGACAATGGTGGTGATTCTACGGATTCGCATTCTCTTATC 775
||||| |||||||||||||| |||||||| | | | | || || |||| ||||||
Sbjct 783 CAAGACCAATCTGATTCTAACAACAATGGTAAT-A-GCGATGG---CG-ATTCACTTATC 836
Query 776 AATGAGATTGGGAGGGACAATTCGATTGA-CTGTTTGATCCGCTGCTCGAGGTCTGATTA 834
||||| ||||| || |||||||| | | | ||||||||| || ||||||||||||| |||
Sbjct 837 AATGATATTGGCAGAGACAATTCTA-TAAGCTGTTTGATTCGTTGCTCGAGGTCTGGTTA 895
Query 835 TGGTTCAATTGCTTCTTTGAACCGGAATTTCCGTTCTTTGGTAAAGAGTGGAGAGATTTA 894
||||| ||||||||||| ||||||| ||| || |||||||| |||| |||||||||||
Sbjct 896 CGGTTCGATTGCTTCTTTAAACCGGAGTTTTCGGTCTTTGGTGAAGACCGGAGAGATTTA 955
Query 895 TAGATTAAGGCGACAAAGCGGGTTTGTTGAACATTGGGTTTACTTCTCTTGCCAGCTCTT 954
|||| | ||| | |||| | | |||||||||||||||||||||||||||| ||||| ||
Sbjct 956 TAGACTCAGGAGGCAAAACCAGATTGTTGAACATTGGGTTTACTTCTCTTGTCAGCTTTT 1015
Query 955 GGAATGGGTTGCGTTCGATCCTGTCGAGAGAAGGTGGATGCAGTTACCAACTATGCCTTC 1014
|||||||||||| ||| ||||| | || ||||| |||||| | || || || |||||||
Sbjct 1016 GGAATGGGTTGCTTTCAATCCTTTTGAAAGAAGATGGATGAATTTGCCTACAATGCCTT- 1074
Query 1015 CA-GTGTTACCTTCATGTGTGCCGATAAGGAGTCTCTGGCCGTTGGGACGGATCTGCTTG 1073
|| ||||||| ||||||||||||||||| || ||| | || ||||| |||||| ||||||
Sbjct 1075 CAGGTGTTACATTCATGTGTGCCGATAAAGAATCTTTAGCTGTTGGTACGGATTTGCTTG 1134
Query 1074 TCTTAGGAAAAGATG-CT--TCTTCTCATGTAATATACAGATACAGTCTACTGACTAATT 1130
| ||||| ||||||| | ||||||||||| ||||| ||||| ||||| ||||||| |
Sbjct 1135 TGTTAGGCAAAGATGATTACTCTTCTCATGTTATATATAGATATAGTCTTTTGACTAACT 1194
Query 1131 CTTGGTCTTCTGGTATGAAGATGAACTCTCCGAGGTGTTTGTTTGGATCCGCGAGCCTTG 1190
|||||||||| ||||||| |||||| |||||||||||||||||||| || ||||| || |
Sbjct 1195 CTTGGTCTTCCGGTATGAGGATGAATTCTCCGAGGTGTTTGTTTGGCTCAGCGAGTCTAG 1254
Query 1191 GAGAGATTGCTATATTTGCTGGTGGATGTGATTCCCA-GAG-AAAGACTCT-TGATTTTG 1247
|||||||||| || ||||||||||| | |||||| | | ||| | || ||||| |
Sbjct 1255 GAGAGATTGCGATCTTTGCTGGTGGTTTTGATTCTTTTG-GCAAA-A-TCAGTGATTCCG 1311
Query 1248 CGGAAATGTATAATTCTGAGCTTCAAACTTGGA-TAACTCTTCC-AAGGATGAACAAACC 1305
| || |||||||| || |||||||| ||||||| || | ||||| ||| ||||| |||||
Sbjct 1312 CTGAGATGTATAACTCCGAGCTTCAGACTTGGACTA-CACTTCCGAAG-ATGAATAAACC 1369
Query 1306 GAGGAAGATGTGTTCGGGTGTTTTTATGGATGGGAAGTTCTATGTAATTGGAGGAATCGG 1365
|||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1370 AAGGAAGATGTGTTCAGGTGTTTTCATGGATGGGAAGTTCTATGTGATTGGAGGAATTGG 1429
Query 1366 TGGTGCTGATTCTAAAGT-CTTGACCTGCGGTGAAGAATATGATTTGGAGACCAAGAAAT 1424
||| |||||| ||||| ||| || || ||||| || | |||||| ||||| |||||||
Sbjct 1430 TGGAAATGATTCGAAAGTGCTT-ACTTGTGGTGAGGAGTTTGATTTAGAGACGAAGAAAT 1488
Query 1425 GGACTCAAATCCCTGACTTGTCGCCTCCAAGAAGCCGTGCTGATCAA-GCTGATATGTCA 1483
||||| | || || || ||||||||||||| ||||| | || || || | | ||
Sbjct 1489 GGACTGAGATACCGGAAATGTCGCCTCCAAGGAGCCG-G--GA--AATGCCG----G-CA 1538
Query 1484 CCAGCACAAGAAGCACCGCCTCTTGTTGCGGTTGTGAATAACCAATTGTACGCTGCTGAT 1543
||||| | | || ||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1539 GCAGCAGA-G--GCGCCGCCTCTTGTTGCGGTTGTGAATAACGAATTGTATGCTGCTGAT 1595
Query 1544 CACGCCGATATGGAAGTGAGGAAGTATGATAAGGAGAATAAGAAATGGTTAACTGTT-GG 1602
|| || ||||||||||||||||||||||||||||||| |||||||||||| ||| || ||
Sbjct 1596 CATGCTGATATGGAAGTGAGGAAGTATGATAAGGAGAGTAAGAAATGGTTTACT-TTAGG 1654
Query 1603 AAGATTGCCTGAAAGAGCTGGCTCGGTTAACGGATGGGGACTT-GCTTTTAGAGCTTGTG 1661
|||||||| |||||||||| |||||||||||| |||||| || || ||||||||||| |
Sbjct 1655 GAGATTGCCCGAAAGAGCTGACTCGGTTAACGGTTGGGGA-TTAGCGTTTAGAGCTTGCG 1713
Query 1662 GGGAGCGGTTAATCGTTATTGGTGGACCGAAGTACT-CAGGAGGTGGGTTCATAGAGCTG 1720
| ||| |||| || || |||||||| || | | | | |||| || |||| ||| || |||
Sbjct 1714 GTGAGAGGTTGATTGTGATTGGTGGTCCTAGG-AGTTCAGGTGGAGGGTACATTGAACTG 1772
Query 1721 AATTCTTGGATACCG---AGCGA-CGGTGGTCCACCGC-AGTGGACATTGCTTGACAGGA 1775
||||| |||||||| || || || | ||| || | | ||||||||||| | ||||
Sbjct 1773 AATTCATGGATACCATCTAGTGATCGAAG-TCCGCCTCTA-TGGACATTGCTCGGTAGGA 1830
Query 1776 AACATTC-TCCTAATTTTGTATACAATTGCGCAGTGATGGGTTGCT 1820
||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 1831 AACATTCATCG-AATTTTGTTTACAATTGCGCGGTGATGGGTTGCT 1875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107579767935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5