BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484201
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02910.1 | Symbols: | Protein of unknown function (DUF616) ... 2359 0.0
> AT2G02910.1 | Symbols: | Protein of unknown function (DUF616)
| chr2:847176-849598 REVERSE LENGTH=1615
Length=1615
Score = 2359 bits (1277), Expect = 0.0
Identities = 1515/1624 (93%), Gaps = 40/1624 (2%)
Strand=Plus/Plus
Query 1 TTCTAAATCGTCACCAGGTTTGTTTCATGGTGAGCTAGAGATCTTCGCTTCAGGTTTTTA 60
|||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 4 TTCTAAATCGCCACCAGGTAGGTTTCATGGTGAGCTAGAGATCTTCGCTTCA-GTGTTTA 62
Query 61 AGGATCAGATAATGTTACCGGAGAGAAGAAGTACGGTGGTTTCTTCTTCTTCATCTTCAT 120
||||| ||||||||||||||||||||||||| ||||| | || ||||||||| |||||||
Sbjct 63 AGGATTAGATAATGTTACCGGAGAGAAGAAGCACGGT-G-TT-TTCTTCTTCTTCTTCAT 119
Query 121 ATCTGAATCAATCTGGTCACAATGATAATTCTTTTTTGCTTCTTCGGAGAGGCAAAAAGT 180
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 ATCTGAATCCATCTGGTCACAATGATAATTCTTTTTTACTTCTTCGGAGAGGCAAAAAGT 179
Query 181 TTGGTCGGATAGTGAAATTGAAGctctcacatttgttcttgttctttgtgtcactctttt 240
||||||| || |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 180 TTGGTCGTATTGTGAAATTGAAGCTTTCACATTTCTTTTTGTTCTTTGTGTCACTCTTTT 239
Query 241 tcttctcttgcttcttctctGGCCATAAACTACTCTTTCATGGTTCTGAATTCTTACCTC 300
||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 TCTTCTCTTGCATGTTCTCTGGCCATAAACTACTCTTTCATGGTTCTGAGTTCTTACCTC 299
Query 301 ATTTTGAGCAAAACCCTTACATGAAAAGTCATATGTTGGTTTCATCAGAGATTGATATAA 360
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 300 ATTTTGAGCAAAACCCTTACATGAACAGTCATATGTTGGTTTCATCGGAGATTGATATAG 359
Query 361 GATCAAACAAATCCAACATCGAAAGACCACCCGGAAGCAAGAAGAGAACTAAGCATTTAC 420
||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 360 GATTAAACAAATCCAACATCGAAAGACCACCTGGAAGCAAGAAGAGAACCAAGCATTTAC 419
Query 421 CTTGTGAAGTTCCACTTGCTGAATCTGTTGATCGCATACTTGATCCTCACGATTATTTGA 480
||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 420 CTTGTGAAGTTCCACTTGCTGAATCTGCTGATCGCATACTTGAGCCTCAGGATTATTTGA 479
Query 481 ATTTTACGCGGTTTTCGTTAGGCTTTGTAGTGACTGAGACATATGATAAGCCTAGGTTTG 540
|||| || |||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 480 ATTTCACTCGGTTTTCGTTAGGCTTTGTAGAGACTGAGACATATGATAACCCTAGGTTTG 539
Query 541 GAGGGCATCAAACACTCAAG-GAAAGAGAGAGATCTTACTCTGCAATAAATCAGACAATT 599
||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GAGGGCATCAAACACTC-AGTGAAAGAGAGAGATCTTACTCTGCAGTAAATCAGACAATT 598
Query 600 CACTGTGGTTTTGTTAAAGGAACTAATGGATTTCATCAAGGGACTGGATTTGATTTGAGT 659
|||||| | ||| | | | ||| |||| |||||||||||||||||
Sbjct 599 CACTGT-G----GTT--------T--T-G---TCA--AAGGAACTGGATTTGATTTGAGC 637
Query 660 GAAATGGATAGGGCTTATATGAAGAACTGTGTAGTCTCTGTGTCTTCTTGCATTTTTGGA 719
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 GAAAAGGATAGGGCCTATATGAAGAACTGTGTAGTCTCTGTGTCTTCTTGCATTTTTGGA 697
Query 720 AGCTCTGATTTTCTAAGGAGACCTGCAACCAAAAAGATCAGTGAATTCTCGAAGCGAAAT 779
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 698 AGCTCTGATTTTCTAAGGAGACCTGCAACCAAAAAGATTAGTGAGTTTTCGAAGCGAAAT 757
Query 780 GTTTGTTTTGTGATGTTCGTTGATGAGCAAACACTATCGAAACTTGCTAGTGAAGGGCAT 839
||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 758 GTTTGCTTTGTGATGTTTGTTGATGAGCAAACGCTATCGAAACTGGCTAGTGAAGGGCAT 817
Query 840 GTTCCTGACAAGCAAGGATTTGTTGGTTTGTGGAAAACTGTAGTAGTGAGCAATTTGCCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GTTCCTGACAAGCAAGGATTTGTTGGTTTGTGGAAAACTGTAGTAGTGAGCAATTTGCCT 877
Query 900 TATACTGATATGCGAAAGACTGGAAAGGTTCCGAAATTTCTGTCACACCGCCTTTTTCCT 959
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 878 TATAATGATATGCGAAAGACTGGCAAGGTTCCGAAATTTCTGTCACACCGCCTTTTTCCT 937
Query 960 TCTTCTAGGTATTCGATTTGGCTAGATAGTAAGATGAGACTCACTACAGATCCTATGCTG 1019
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TCTTCTAGGTATTCAATTTGGCTAGATAGTAAGATGAGACTCACTACAGATCCTATGCTG 997
Query 1020 ATCATTGACTTCTTCTTATGGAGAACAAAATCAGAATTCGCTATCTCGAACCATTATGAC 1079
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 998 ATCATTGACTTCTTCTTATGGAGAACAAAATCAGAATTCGCTATCTCCAACCATTATGAC 1057
Query 1080 CGGCATTGTGTTTGGGATGAAGTGTTACAGAACAAACGGCTGAACAAGTACAACCATTCG 1139
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1058 CGGCATTGTGTGTGGGATGAAGTGTTACAGAACAAACGGCTGAATAAGTACAACCATTCG 1117
Query 1140 GCCATCGATGAACAGTTTATGTTCTACCGATCAGATGGTCTCAAGAAATTTGACCCTTCA 1199
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1118 GCCATTGATGAACAGTTTATGTTTTACCGATCAGATGGTCTCAAGAAATTTGATCCTTCA 1177
Query 1200 GATCCTAATTCTCCTCTTCCAAGTTATGTACCTGAAGGTTCTTTTATTGTAAGGGCTCAT 1259
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1178 GATCCTAATTCTCCTCTTCCAAGTTATGTACCGGAAGGTTCTTTTATTGTAAGGGCTCAT 1237
Query 1260 ACACCAATGTCAAACCTCTTCACATGCCTTTGGTTCAATGAAGTTGATCGGTTTACCTCA 1319
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1238 ACACCAATGTCAAACCTCTTCACTTGCCTTTGGTTCAATGAAGTTGATCGGTTTACCTCA 1297
Query 1320 CGAGATCAATTGAGTTTTGCGTACACATACCTTAAACTGCAGAGACTGAATCCAGATAGA 1379
|||||||| ||||||||||| ||||||||||||||||| |||||||||||| | ||||||
Sbjct 1298 CGAGATCAGTTGAGTTTTGCATACACATACCTTAAACTTCAGAGACTGAATTCGGATAGA 1357
Query 1380 CCCTTACGCCTAAACATGTTCAAGGACTGTGAACGTCGAGCATTAACTAAGCTCTTCCAC 1439
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1358 CCCTTGCGCCTAAACATGTTCAAGGATTGTGAGCGTCGAGCATTAACTAAGCTCTTCCAC 1417
Query 1440 CATCGCGTAGATTCATCGCCTCCTTCACCTCCTGCTTGATTGATTAAGTAAAGATAGTGT 1499
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1418 CATCGCGTAGATTCATCGCCTCCTTCACCTCCTACTTGATTGATTAAGTATAGATAGTGT 1477
Query 1500 TCT-A-----C-A-A-TTTTTGTACTTTTCTCCGCATTCTACTTCTTCTAGTCTAACTTT 1550
||| | | | | ||||||||||||||||| | || ||||| || |||||||||||
Sbjct 1478 TCTTATGTTTCTACAATTTTTGTACTTTTCTCCTCTTTATACTT-TT--AGTCTAACTTT 1534
Query 1551 GAAGGAGATGAAACATGGAAGAGGAACCTAATTGACATTGTGTATGAGCCAAGATAGAAA 1610
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1535 GAAGGAGATGAAACATGGAAGAGGAACCTAATTGACATTGTGTATGAGCCATTATAGTAA 1594
Query 1611 TCTT 1614
|||
Sbjct 1595 -CTT 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81023679630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5