BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484204
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02950.1 | Symbols: PKS1 | phytochrome kinase substrate 1 | ... 2085 0.0
AT1G14280.1 | Symbols: PKS2 | phytochrome kinase substrate 2 | ... 147 4e-34
> AT2G02950.1 | Symbols: PKS1 | phytochrome kinase substrate 1
| chr2:854947-856538 REVERSE LENGTH=1592
Length=1592
Score = 2085 bits (1129), Expect = 0.0
Identities = 1432/1568 (91%), Gaps = 62/1568 (4%)
Strand=Plus/Plus
Query 1 ATGGTGACACTAACACCATCTTCTTCTTCAACTCCAAAGACATCTTTTGATTTCATGAAG 60
|||||||||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct 71 ATGGTGACACTAACACCATCTTCTGCTAGTACCCCAAAAACATCTTTTGATTTCATGAAG 130
Query 61 AATAACAACAGTCACAGTCTCTATGTttcttcctcttccccttcttcttcttcttACTTG 120
||||||||||||||||| | | | || | || | |||||||||||||||||||
Sbjct 131 AATAACAACAGTCACAG---C-A-G--TC-T-CT-AT--GTTTCTTCTTCTTCTTACTTG 178
Query 121 AGCAGCAAGGAAGATGCTGTTCTCACAACCAAGAAGCTCATGGAGCCAAGCAAAACCCTA 180
|||||||||||||||||| || |||| ||||||||||||||||| ||||||||||| |||
Sbjct 179 AGCAGCAAGGAAGATGCTCTTGTCACGACCAAGAAGCTCATGGAACCAAGCAAAACACTA 238
Query 181 AACATGAGCATCAATATTCAAAAAC-A-A-GAGTTTGGCGATGAGAAGAAAATGGTGAAG 237
||||||||||| || || ||||| | | |||||||| |||||||||||||||||||||
Sbjct 239 AACATGAGCAT---TAATCCAAAACAAGAGGAGTTTGGTGATGAGAAGAAAATGGTGAAG 295
Query 238 AAAGCTACTGAAGATCCAGAGATTGGTGTGTTTGGAGCTGAGAAGTACTTCAATGGAGAC 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AAAGCTCCTGAAGATCCAGAGATTGGTGTGTTTGGAGCTGAGAAGTACTTCAATGGAGAC 355
Query 298 ATGGATTCAGACCAAGGTTCTAGTGTTCTGTCTCTGACAAACCCAGAAGTTGAGAGAACC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ATGGATTCAGACCAAGGTTCTAGTGTTCTGTCTCTGACAAACCCAGAAGTTGAGAGAACC 415
Query 358 ATCGTCGATTCGAAGCAGAGCGCGAAGAAATCTACTGGAACCCCGAGTGTCCGGTCTGAA 417
||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 416 GTCGTCGACTCGAAGCAGAGCGCGAAGAAATCTACTGGTACTCCGAGTGTCCGGTCTGAA 475
Query 418 TCAAGCTGGAATAGTCAGAGCGTGTTGCTTCAGAACAAACTGGTGAATAGCTGCAACAGT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TCAAGCTGGAATAGTCAGAGCGTGTTGCTTCAGAACAAACTGGTGAATAGCTGCAACAGT 535
Query 478 TCCTTCAAGGAGAAGAAGAAGAACAGTAATGGTCAGATTCAAAAGGCGAGCAATAATAAG 537
|||||||| | ||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 536 TCCTTCAA-G-GAA-AAGAAGAACAGTAATGGTCAGATTCAAAAGGTGACCAATAATAAG 592
Query 538 AAGAGTTTTCTCGCAAATTTGGGGTGTAAATGCGCCTGTTCTGATGGGAATTCAGTAGAT 597
||||||||||||||||||||||||||||||||||| || ||||||||| |||| ||||||
Sbjct 593 AAGAGTTTTCTCGCAAATTTGGGGTGTAAATGCGCATGCTCTGATGGGGATTCTGTAGAT 652
Query 598 GTCGACGATAAAATCTCGGTTAAGAGAAGCGCTGATCCGAATATCTCTGTTATCGCAATG 657
||||| || |||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 653 GTCGAGGAGAAAACCTCGGTCAAGAGAAGCGCTGATCCGAATATCTCTGTTAT--C---- 706
Query 658 AGGAAGATCGAAAATCAGGTGAGATCTTCTGTGGATATGAACACAGAACTGATCAAGATT 717
| | | | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 707 ------A-C----A--A--TGAGATCTTCTGCGGATATGAACACAGAACTGATCAAGATT 751
Query 718 CAGAAGCAAGAAGAGTTATCACAGAGGAAGTCTCTTGAAGTTTTTGGATCTCCTGTAACT 777
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 752 CAGAAGCAAGAGGAGTTATCACAGAGGAAGTCTCTTGAAGTTTTTGGATCTCCAGTGGCT 811
Query 778 ATTGAGAAGAAGAGTACCGTTGTTCAGAAGAAGCTCCCCTTGCCTCCATGGAAATCAAGA 837
|||||||||||||||| |||||||||||||| || || ||||||||||||||||| |||
Sbjct 812 ATTGAGAAGAAGAGTAGTGTTGTTCAGAAGAAACTACCATTGCCTCCATGGAAATCGAGA 871
Query 838 ACAGAGGAGGAAGACACAAAGAGTGAAGGGAGTGATTCAAGCTCGGATCTATTCGAGATA 897
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 872 ACAGAGGAGGACGACACAAAGAGTGAAGGGAGTGATTCAAGCTCGGATCTTTTCGAGATA 931
Query 898 GAGGGTCTTACAGGGAACCCTAAACCTTTTCTTACGAGGCAAGGAAGTGATCCGGCTTCA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 932 GAGGGTCTTACAGGGAACCCTAAACCTTTTCTTACGAGGCAAGGAAGTGATCCAGCTTCA 991
Query 958 CCTACGTGTTATGCGCCAAGTGAAGTAAGCGTAGAATGGAGCATAGTGACAGCAAGTGCA 1017
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 992 CCTACGTGTTATGCGCCAAGTGAAGTAAGCGTAGAGTGGAGCATAGTGACAGCAAGTGCA 1051
Query 1018 GCAGATTTCTCTGTTATGTCAGAATGTGCAACAAGTCCCGTAAGAAGAAACCGATCTTCT 1077
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 1052 GCAGATTTCTCTGTTATGTCAGAATGTGCAACAAGTCCTGTAAGAAGAAACCGACCTACT 1111
Query 1078 CAGATTCCTAGAATCCCTATTACCGCTAAATCAGCACCGCAGAGACGGAAATCGAGT--- 1134
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 CAGATTCCTCGAATCCCTATTACCGCTAAATCAGCACCGCAGAGACGGAAATCGAGTAGC 1171
Query 1135 AGCAGCGGAGGCAGTGGTTTCTTGATGAGCTGCAAGAGTCATAAATCTGTTATGGTTTCT 1194
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 AGCAGCGGAGGGAATGGTTTCTTGATGAGCTGCAAGAGTCATAAATCTGTTATGGTTTCT 1231
Query 1195 GGTGATTTAGACAGAAGAAGCAGCATCAATAAGACAACA-CCGAGTTATGTTCCCAGATT 1253
|||||||||||||||||||||||||| || |||||| || |||||||| ||||| |||||
Sbjct 1232 GGTGATTTAGACAGAAGAAGCAGCATGAACAAGACA-CAACCGAGTTACGTTCCTAGATT 1290
Query 1254 CCCAATGGAGACTACTAAATCTAAGAGTTTCGAAACACGAAGAAGGATCAGCAACAGCTC 1313
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 CCCAATGGAGACTACTAAACCTAAGAGTTTCGAAACACGAAGAAGGATCAGCAACAGCTC 1350
Query 1314 GATTTCTCACACACAATCATCTCTTCTGTATAGTCAGTGATTGCACTAAAGTAAAAGAAA 1373
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1351 GATTTCTCACACACAATCATCTCTTCTTTATAGTCAGTGATTGCAAGAAAGTAAAAGAAA 1410
Query 1374 ACGATTTCAATCTCTTATCTCTCTTTATCTATAATATCTACCGAGTGAGAAAGATTTATA 1433
| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| | ||
Sbjct 1411 AAGATTTCAATCTCTGATCTCTCTTTATCTATAATTTCTACTGAGTGAGAAAGATATGTA 1470
Query 1434 AACTTATA-TAATGTCTTGTTGAGTTCTTGATCACAATGTGAAAATCAAATGAATTTTAA 1492
|||||||| |||||||||||||||| | || || | |||||| ||||| ||
Sbjct 1471 AACTTATAATAATGTCTTGTTGAGT-C-----CA---TG--A---TCAAATCAATTTAAA 1516
Query 1493 AGGGTTTCTTAGAGACCTCTTGCACCAAAGAAAAACTTACTCAAAGAGTGAAAAATGATT 1552
|||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 1517 AGGGTTTCTTAGAGACCTTTTGCACCTAAGAAAAAGTTACTCAAAGAGTGACAAATGATT 1576
Query 1553 AGAGAGTG 1560
|||||||
Sbjct 1577 GGAGAGTG 1584
> AT1G14280.1 | Symbols: PKS2 | phytochrome kinase substrate 2
| chr1:4877627-4879149 FORWARD LENGTH=1523
Length=1523
Score = 147 bits (79), Expect = 4e-34
Identities = 185/234 (79%), Gaps = 15/234 (6%)
Strand=Plus/Plus
Query 235 AAGAAAGCTACTGAAGATCCAGAGATTGGTGTGTTTGGAGCTGAGAAGTACTTCAATGGA 294
||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 229 AAGAAAGCTTCTGAAGATTTGGAGATCAGTGTGTTTGGAGCTGAGAAGTACTTCAATGGA 288
Query 295 GACATGGATTCAGACCA-AGGTTCTAGTGTTCTGTCTC-T--GACAAACCCAGAAGTT-- 348
|| |||||||| ||||| || | |||| || |||||| | | || | |||||||||
Sbjct 289 GATATGGATTCTGACCACAG-TCCTAGACTTGTGTCTCCTCTGCCAGATCCAGAAGTTCC 347
Query 349 ----GAGAGAACCATCGTCGATTCGAAGCAGAGCGCGAAGAAATC-TACTGGAACC-CCG 402
||||||| | | || | | ||||||| ||| ||||||| || | | |||| | ||
Sbjct 348 AATAGAGAGAATCTTTGTTGGTCCGAAGCAAAGCTCGAAGAATTCCT-C-GGAAACTCCT 405
Query 403 AGTGTCCGGTCTGAATCAAGCTGGAATAGTCAGAGCGTGTTGCTTCAGAACAAA 456
||| | ||||||||||| || |||||||| ||||| |||||||||||| ||||
Sbjct 406 AGTCTTCGGTCTGAATCCAGTTGGAATAGCCAGAGTTTGTTGCTTCAGAGCAAA 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5