BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484210
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02960.5 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 909 0.0
> AT2G02960.5 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr2:862087-864359 REVERSE LENGTH=1560
Length=1560
Score = 909 bits (492), Expect = 0.0
Identities = 550/577 (95%), Gaps = 7/577 (1%)
Strand=Plus/Plus
Query 259 TGTCTCCGGTTAATGCGGAGGTTGAGGAGATGAGATCAGAGCCGCCGGTGGTTGATGAGA 318
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
Sbjct 381 TGTCTCCGGTTAATGCGGAGGTTGAGGAGATGAGATCAGAGTCGCCGGTGGTTAATGATA 440
Query 319 AGGCGATT-GATATATCTGATGATG---ATGGTGATGAGAATGAACCGCTTATTGTCTCT 374
||||| || ||||| |||||||||| ||| |||||||||||||||||||||||| |||
Sbjct 441 AGGCG-TTAGATATTTCTGATGATGATCATGATGATGAGAATGAACCGCTTATTGTTTCT 499
Query 375 GCG-GAATGTCGTATTTGTTCTGATGAGTCTCCTGTTGAGAATCTTGAGAGTCCTTGTGC 433
| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 500 G-GTGAATGTCGTATTTGTTCTGATGAGTCTCCTGTTGAGAATCTTGAGAGCCCTTGTGC 558
Query 434 TTGCAGTGGCAGCTTAAAGTATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAA 493
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 TTGCAGTGGCAGCCTAAAGTATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAA 618
Query 494 GGGAAACATTATATGCGAGATTTGTCATCAGCCTTACCAGCCTGGATATACCGCTCCACC 553
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 619 GGGAAACATTATATGCGAGATTTGTCACCAGCCTTATCAACCTGGATATACCGCTCCACC 678
Query 554 ACCTCCACTTCAGCCTGAAGAAACAACTATTGACATTGGAGGAGGATGGACAATCTCAGG 613
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 679 ACCTCCACTTCAGCCTGAAGAAACAACTATTGACATTGGTGGAGGATGGACAATCTCAGG 738
Query 614 TTTGGATGTGCATGATCCTCGGCTCCTTGCTATTGCTGAAGCTGAACGTCGGTATTTAGA 673
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 739 TTTGGATGTGCATGATCCTCGTCTCCTTGCAATTGCTGAAGCTGAACGTCGGTATTTAGA 798
Query 674 GTCTGAATATGTTGAATATACAGCTTCAAGTGCCAGCGGGGCTGCATTCTGTCGCTCAGC 733
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 799 GTCTGAATATGTGGAATATACAGCTTCAAGTGCAAGCGGGGCCGCATTCTGTCGCTCAGC 858
Query 734 TGCTCTAATCTTAATGGCTCTTCTTCTCTTACGACACGCACTGACCATAACAGATGATGC 793
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 859 TGCTCTAATATTAATGGCTCTTCTTCTCTTACGACACGCACTGACCATAACAGATGATAC 918
Query 794 TGATGGAGAAGAAGACGACCCATCTTCGATACTATCT 830
|||||| ||||||||||||||||||||||||||||||
Sbjct 919 TGATGGCGAAGAAGACGACCCATCTTCGATACTATCT 955
Score = 588 bits (318), Expect = 5e-167
Identities = 403/442 (91%), Gaps = 14/442 (3%)
Strand=Plus/Plus
Query 831 CTTGTCTTGCTCCGAGCTGCTGGATTTCTTCTTCCATGCTATATCATGGCTTGGGCCATC 890
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CTTGTCCTGCTCCGAGCTGCTGGATTTCTTCTTCCATGCTATATCATGGCTTGGGCCATC 1121
Query 891 AGTATTCTACAGCGCCGAAGACAAAGACAGGAAGCTGCAGCTTTGGCTACACAGTTTGCA 950
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1122 AGTATTCTACAGCGCCGAAGACAGAGACAGGAAGCTGCAGCTTTGGCTACACAGTTTGCG 1181
Query 951 TTGGTGCTTCAGTCAGGGCAGCCTAGAACAGTTCACTTCACGGTATCACCGGGAATATCA 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TTGGTGCTTCAGTCAGGGCAGCCTAGAACAGTTCACTTCACGGTATCACCGGGAATATCA 1241
Query 1011 TCATCCCCCATGGCTCATGCGACTACATCTACACAACAACAGCATGACGATCCTGTCTGA 1070
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TCATCCGCCGTGGCTCATGCGACTACATCTACACAACAACAGCATGACGATCCTGTCTGA 1301
Query 1071 ATTCTGATCTAATGGCATAA-CTATGGAGCCATTACAAGGTACGAGGGAAATCGAATGAA 1129
|||||||||||||| || || | |||||||||||||||||||||| | ||||| ||||||
Sbjct 1302 ATTCTGATCTAATGTCACAAGC-ATGGAGCCATTACAAGGTACGATGTAAATCAAATGAA 1360
Query 1130 GAGTTTGATGTCTGTAAATTTAGAATGTTGTATGAGTAAATGATTGAAATCATTTGAGTT 1189
|| |||| |||| ||||||| | | ||||||||| |||||||||||||||| ||
Sbjct 1361 GAATTTGGTGTCCGTAAATT--G--T-----ATGAGTAAAGGATTGAAATCATTTGAATT 1411
Query 1190 CTTGGAATGTTATATCTCATTCTTTTTACCTGTAGCCAAAAATGTCAA-TAGCTTTTGAA 1248
| ||||| |||| |||| ||| |||||| |||||||||||||||||| ||| ||||| |
Sbjct 1412 CGTGGAAGGTTAGATCT--TTCATTTTACTTGTAGCCAAAAATGTCAAATAGGTTTTGCA 1469
Query 1249 CAAATTTGTATATTATGTTTTA 1270
|||||||||| ||| || ||||
Sbjct 1470 CAAATTTGTAAATTCTGCTTTA 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5