BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484212
Length=1951
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR) s... 2870 0.0
> AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:868359-870385 FORWARD LENGTH=2027
Length=2027
Score = 2870 bits (1554), Expect = 0.0
Identities = 1804/1926 (94%), Gaps = 12/1926 (1%)
Strand=Plus/Plus
Query 1 GGCTTATCGTTATCCTCAAGATTTGACAG-TTAAACAACGAGAAGCTCAAATTCAGAGCT 59
||||||||||||||||||||||||| ||| || || || |||||||||||| ||||||||
Sbjct 47 GGCTTATCGTTATCCTCAAGATTTGTCAGTTTGAATAATGAGAAGCTCAAAATCAGAGCT 106
Query 60 TTAATGGCTATATCTTCTGCTTCACTAATATCATCATTCTCACACGCAGAAACTTTTACT 119
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 107 TTAATGGCGATATCTTCAGCTTCACTAATATCATCATTCTCACACGCAGAAACGTTCACT 166
Query 120 AAACCTTTAAAAATCGACACTGTGAATCCGAATCCACCAAACCCGATTCTTCTAATTTCC 179
|| | || |||||||||||||||||| | ||| ||||||||||||||| ||||||
Sbjct 167 AAGCATTCGAAAATCGACACTGTGAAT----A--CACAAAACCCGATTCTTCTGATTTCC 220
Query 180 AAATGCAATTCTGAAAGAGAGCTGATGCAAATTCAAGCTTACGCGATCAAATCTCATCA- 238
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 221 AAATGCAATTCTCTAAGAGAGCTGATGCAAATTCAAGCTTACGCGATCAAATCTCAT-AT 279
Query 239 AGAAGATGTTTCCTTCAACACTAAGCTGATAAATTTCTGCACTGAGTCTCCAACGGAGTC 298
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 280 TGAAGATGTTTCCTTCGTCGCTAAGCTGATAAATTTCTGCACTGAGTCTCCAACGGAGTC 339
Query 299 TTCAATGTCATACGCACGCCACTTGTTCGACGCAATGTCTGAACCAGATATAGTGATTTT 358
|||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 340 TTCAATGTCATATGCACGCCACTTGTTCGAGGCAATGTCTGAACCAGATATTGTCATTTT 399
Query 359 TAATTCTATAGCTCGTGGGTATTCTCGCTCCACGAATCCTCTTGAGGTGTTTAATCTCTT 418
||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 400 TAATTCTATGGCTCGTGGGTATTCTCGCTTCACGAATCCTCTTGAGGTTTTTAGTCTCTT 459
Query 419 CGTTGAGATCTTAGAAGATGATCTTTTACCTGATAACTATACTTTCCCGTCTCTTCTCAA 478
|||||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||
Sbjct 460 CGTTGAGATCTTAGAAGATGGTATTTTACCTGACAACTACACTTTCCCGTCTCTTCTCAA 519
Query 479 AGCTTGTGCAGTGGCAAAGGCATTAGAAGAAGGTAGACAATTGCATTGTCTGTCGATGAA 538
|||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 520 AGCTTGTGCAGTAGCAAAGGCGTTAGAAGAAGGTAGACAATTGCATTGTTTGTCGATGAA 579
Query 539 ATTAGGGGTTGATGATAATGTATATGTTTGCCCTACGCTTATTAATATGTACACTGAGTG 598
| ||||| ||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 580 ACTAGGGCTTGATGATAATGTCTATGTTTGTCCAACGCTTATTAATATGTACACTGAGTG 639
Query 599 TGAAGATGTGGATGCTGCTCGTTGTGTGTTTGATCGGATTGTTGAGCCGTGCGTTGTTTG 658
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 640 TGAAGATGTGGATTCTGCTCGTTGTGTGTTTGATCGGATTGTTGAGCCGTGTGTTGTTTG 699
Query 659 TTATAATGCTATGATCACGGGGTACGCGAGAAGAAACAGACCAAACGAGGCTTTATCTTT 718
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 700 TTATAATGCTATGATCACGGGTTATGCGAGAAGAAACAGACCGAACGAGGCTTTATCTTT 759
Query 719 GTTCCGTGAAATGCAAGGTAAGAACTTGAAGCCGAATGAGATTACCCTTTTGAGTGTTCT 778
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 760 GTTCCGTGAAATGCAAGGTAAGTACTTGAAGCCGAATGAGATTACCCTTTTGAGTGTTCT 819
Query 779 GTCTTCTTGTGCTCTGTTGGGATCGTTAGATCTAGGGAAATGGATACATGAGTATGCTAA 838
||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 820 GTCATCTTGTGCTCTGTTGGGATCGTTAGATTTAGGGAAATGGATACATAAGTATGCTAA 879
Query 839 GAAACATGGTTTTTGTAAGTATGTGAAAGTAAACACAGCTTTGATCGATATGTTTGCGAA 898
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GAAACATAGTTTCTGTAAGTATGTGAAAGTAAACACAGCTTTGATCGATATGTTTGCGAA 939
Query 899 ATGTGGTAGCTTGGATGATGCAGTGTCTATATTTGAAGATATGAGGTATAAGGATACACA 958
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 940 ATGTGGTAGCTTGGATGATGCAGTGTCTATATTCGAAAAAATGAGGTATAAGGATACACA 999
Query 959 AGCTTGGTCAGCGATGATTGTAGCTTATGCGAATCA-CGGACAAGCTGAGAATTCCATGT 1017
|||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 1000 AGCTTGGTCAGCAATGATTGTAGCTTATGCGAATCATGGGA-AAGCTGAGAAATCCATGT 1058
Query 1018 TAATGTTTGAGAGAATGAGATCTGAAAATGTTCAGCCTGATGAGATCACGTTTCTCGGTC 1077
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1059 TGATGTTTGAGAGAATGAGGTCTGAAAATGTTCAGCCTGATGAGATCACATTTCTCGGTC 1118
Query 1078 TGTTAAACGCTTGCAGCCACACAGGTCTCGTGGAAGAAGGGCGCAAGTATTTCTCACGGA 1137
|||||||||||||||||||||| |||| |||||||||||| | ||||||||||||| ||
Sbjct 1119 TGTTAAACGCTTGCAGCCACACTGGTCGAGTGGAAGAAGGGAGAAAGTATTTCTCACAGA 1178
Query 1138 TGATTAACGAATTTGGGATTGTTCCGAGTATTAAGCATTATGGTTCTATGGTAGATCTTC 1197
|| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 TGGTTAGCAAATTTGGGATTGTTCCGAGTATTAAGCATTATGGTTCTATGGTAGATCTTC 1238
Query 1198 TTGGTAGAGCTGGAAATTTAGAAGATGCTTATGAATTCATTGATAAGCTCCCGATAAGTC 1257
|| ||||||||||||||||||||||||| ||||||||||||||||||||||| || || |
Sbjct 1239 TTAGTAGAGCTGGAAATTTAGAAGATGCATATGAATTCATTGATAAGCTCCCAATTAGCC 1298
Query 1258 CAACACCGATGTTATGGAGGATTCTTTTAGCTGCTTGTAGCAGCCATAACAATTTGGAGC 1317
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1299 CAACACCAATGCTATGGAGGATTCTTTTAGCTGCTTGTAGCAGCCATAACAATTTGGACC 1358
Query 1318 TAGCTGAAAAGGTTAGCGAAAGGATCTTAGAGCTAGATGATTCGCACGGTGGCGATTACG 1377
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 1359 TAGCTGAAAAGGTTAGCGAGAGGATCTTTGAGCTAGATGATTCACACGGTGGCGATTACG 1418
Query 1378 TGATCTTATCAAATCTATACGCGAGAAACAAGAAATGGGAAGCTGTAGATTCTTTAAGAA 1437
|||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1419 TGATTTTATCAAACCTATACGCGAGAAACAAGAAATGGGAATATGTAGATTCTTTAAGAA 1478
Query 1438 AGGTGATGAAGGATCGAAAGGCGGTTAAAGTTCCAGGGTGTAGCTCGATTGAGGTGAACA 1497
|||||||||| ||||||||||||||||||||||| || || |||||||||||||| ||||
Sbjct 1479 AGGTGATGAAAGATCGAAAGGCGGTTAAAGTTCCCGGTTGCAGCTCGATTGAGGTAAACA 1538
Query 1498 ATGTTGTTCATGAGTTTTTCTCAGGGGATGGTGTGAAGTCTGCAACCACAAAGCTTCACA 1557
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 ATGTGGTTCATGAGTTTTTCTCAGGGGATGGTGTGAAGTCTGCAACCACAAAGCTTCACA 1598
Query 1558 GAGCATTAGATGAAATGGTGAAAGAGCTAAAGCTTGCAGGCTATGTTCCTGATACATCAA 1617
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1599 GAGCATTAGATGAAATGGTGAAAGAGCTAAAGCTTTCAGGTTATGTTCCTGATACATCAA 1658
Query 1618 TGGTGGTTCACGCTGATATGAGTGACAAAGAGAAGGAGATTACGCTTAGGTATCACAGCG 1677
|||| |||||||| |||||| |||| |||||||||| ||||||||||||||||||||||
Sbjct 1659 TGGTAGTTCACGCCAATATGAATGACCAAGAGAAGGAAATTACGCTTAGGTATCACAGCG 1718
Query 1678 AGAAGCTTGCGATAGCATTTGGGTTATTGAATACTCCTCCGGGAACAACGATTCGGGTTG 1737
| |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1719 AAAAGCTTGCGATAACGTTTGGATTATTGAATACTCCTCCGGGAACAACGATTCGGGTTG 1778
Query 1738 TGAAGAATCTTAGGGTGTGTAGAGATTGCCACAATGCAGCTAAGTTGATCTCTCTAATAT 1797
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||
Sbjct 1779 TGAAGAATCTTAGGGTGTGTAGAGATTGTCACAATGCAGCAAAGTTGATATCTCTTATAT 1838
Query 1798 TTGGTAGGAAAGTTGTTCTCAGAGATGTTCAAAGGTTTCATCATTTTGAAGATGGTAAAT 1857
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1839 TTGGTAGGAAAGTTGTTCTTAGAGATGTTCAAAGGTTTCATCATTTTGAAGATGGAAAAT 1898
Query 1858 GTTCTTGTAGGGATTTTTGGTGACGTCA-CTCCAGACCAACAACATAATTTTCCGTAGCT 1916
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1899 GTTCTTGTGGGGATTTTTGGTGACGTCATCTCCAGACCAACAACATAATTTTCCGTAGCT 1958
Query 1917 AAAAAT 1922
||||||
Sbjct 1959 AAAAAT 1964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96636049125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5