BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484214
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03050.1 | Symbols: EMB93, SOLDAT10 | Mitochondrial transcri... 1426 0.0
> AT2G03050.1 | Symbols: EMB93, SOLDAT10 | Mitochondrial transcription
termination factor family protein | chr2:899690-900946
REVERSE LENGTH=1257
Length=1257
Score = 1426 bits (772), Expect = 0.0
Identities = 856/895 (96%), Gaps = 12/895 (1%)
Strand=Plus/Plus
Query 3 GATGATTGCAAGGTGCTCTCTTTTTCCGCCGCCGTGTTTCTCCGCCGTCA-GAGTTAGAT 61
|||||| |||||||| |||||||||||||||||||||||||||||||| | || ||||||
Sbjct 1 GATGATAGCAAGGTGTTCTCTTTTTCCGCCGCCGTGTTTCTCCGCCGTGAGGA-TTAGAT 59
Query 62 GTTTCGCCGGAGAAACTTCAGATACTGGGATTCTATTTCGAGAGAAGCTTATTTATCTTC 121
||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 60 GTTTCGCCGGAGAAACTTCAGATACTGGGATTCTATTCCGGGAGAAGCTTATTTACCTTC 119
Query 122 AAGACCTTAACGTTGATCCTCACAAAGCTCTCCGAGTAAACCCATCTCTCCGTTCAGCTC 181
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 AAGACCTTAACGTAGATCCTCACAAAGCTCTCCGAGTAAACCCATCTCTCCGTTCTGCTC 179
Query 182 CAATCTCCTCCGTTGTCTCCGTCGAGAGTCTTCTCTCTTCCACCGGACTCTCAAGACCTG 241
||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 180 CAATCTCCTCCGTCGTCTCCGTCGAGACTCTACTCTCTTCCACCGGACTCTCAAGACCCG 239
Query 242 CCGTTGGTCGTATCCTCGATATGTTTCCAGATTTGTTAACTTCTGATCCTGAATCTGAAA 301
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCGTTGGTCGTATCCTCGACATGTTTCCAGATTTGTTAACTTCTGATCCTGAATCTGAAA 299
Query 302 TCTTACCAGTTCTTCGCTTCTTATCCGATGAGATTTCAATTTCAGAGCAAGATATTCCCA 361
|||||||||||||||||||||||||| ||||||||||||||||||||||||| || || |
Sbjct 300 TCTTACCAGTTCTTCGCTTCTTATCCAATGAGATTTCAATTTCAGAGCAAGACATACCTA 359
Query 362 AATCGATCTCTCGCTGTCCTCGATTGCTAATTTCATCTGTAGATTATCAGCTTCGTCCTG 421
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATCGATCTCTCGTTGTCCTCGATTGCTAATTTCATCTGTAGATTATCAGCTTCGTCCTG 419
Query 422 CATTAACGTTTCTCAAAACCCTAGGATTCGTGGGTCGCGACACGATTACGTCACGGAACA 481
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CATTAACGTTCCTCAAAACCCTAGGATTCGTGGGTCGCGACACGATTACGTCACGGAACA 479
Query 482 CGGT-TCTGCTTGTATCGAATGTGGAAAGAACCCTAATCCCCAAAATTGAGTACCTTGAA 540
|||| | |||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 480 CGGTGT-TGCTTGTATCGAATGTGGAACGAACCCTAATCCCCAAAATTGAGTATCTTGAA 538
Query 541 GAAGGGTTAGGGTTTA-ATAGAGAAGAAGTAGCGAAGATGGTTGTGAGATCTCCGGCGTT 599
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAAGGGTTAGGGTTTACA-AGAGAAGAAGTAGCGAAGATGGTTGTGAGATCTCCGGCGTT 597
Query 600 GTTGACTTATAGTGTGGATAACAATTTAGTTCCTAAAGTTGAGTTTTTTATGGAGGAGAT 659
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 GTTGACTTATAGTGTTGATAACAATTTAGTTCCTAAAGTTGAGTTTTTTATTGAGGAGAT 657
Query 660 TCGTGGTGATGTTAAGGAGCTGAAACGTTTCCCTCAGTATTTTTCGTTTAGCTTGGAGAG 719
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GCGTGGAGATGTTAAGGAGCTGAAACGTTTCCCTCAGTATTTTTCGTTTAGCTTGGAGAG 717
Query 720 GAAGATAAAGCCAAGGCATAGATTGCTTAAGGAACATGGGATTTTGATGCCGTTGTCTGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 718 GAAGATAAAGCCAAGGCATAGATTGCTTAAGGAACATGGGATTTTGATGCCTTTGTCTGA 777
Query 780 GATGTTGAAGGTTAGTGATGGTCAGTTTAACAATTGGCTTTTAGAACTTCGTCTTAGGTC 839
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 778 GATGTTGAAGGTTAGTGATGGTCAGTTTAACCATTGGCTTTTAGAACTTCGTCTTAGGTC 837
Query 840 TGCTGAAAGAAGATGATGATAAACAACAACGATGTAAGCTTTTTTGATGTTCTTT 894
||||||||||||||||||||||||||||||| | | |||||| ||||||||||
Sbjct 838 TGCTGAAAGAAGATGATGATAAACAACAACG-T-T---CTTTTT-GATGTTCTTT 886
Score = 191 bits (103), Expect = 1e-47
Identities = 141/157 (90%), Gaps = 11/157 (7%)
Strand=Plus/Plus
Query 843 TGAAAGAAGATGATGATAAACAACAACGATGTAAGCTTTTTTGATGTTCTTTGTTCTTTT 902
||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| ||
Sbjct 1005 TGAAAGAAGATGATGATCAACAACAACAATGTAAGC-TTTTTGATGTTCTTTGTTC-TTG 1062
Query 903 TTACTTGAGATTTGAGAGATGAAAATTGCAAAAGTTTTGTACTTTGGGACATGCTAAGAC 962
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1063 GTACTTGAGATTTGAGAGATGAAAATTGCAGAAGTTTTGTACTTTGGGACATGCTAAGAC 1122
Query 963 A-T-------GAGCTTGTATATAGTTTTT-GTTTCAA 990
| | ||||||||||||||||||| |||||||
Sbjct 1123 ACTTTCATATGAGCTTGTATATAGTTTTTTGTTTCAA 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5