BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484221

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G03130.1 | Symbols:  | Ribosomal protein L12/ ATP-dependent ...   196    8e-50


> AT2G03130.1 | Symbols:  | Ribosomal protein L12/ ATP-dependent 
Clp protease adaptor protein ClpS family protein | chr2:940744-941076 
FORWARD LENGTH=333
Length=333

 Score =  196 bits (106),  Expect = 8e-50
 Identities = 120/127 (94%), Gaps = 0/127 (0%)
 Strand=Plus/Plus

Query  1    ATGAGAGTACTGAGGGACGGCCAAAGTGGTGGTGGTGCCAATGAGGGAGCCAAAGCGGAG  60
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1    ATGAGAGTACTGAGGGACGGCCAAAGTGGTGGTGGTGCCAATGAGGGAGCTAAAGCGGAG  60

Query  61   AAGACTGTTTTTGAGGTTAAACTGGAGTCTTTCGACCCATGTGCGAAAATCAAGATCATT  120
            |||||||| |||||||||||||| |||||||||||  || ||||||||||||||||||||
Sbjct  61   AAGACTGTGTTTGAGGTTAAACTTGAGTCTTTCGAGGCACGTGCGAAAATCAAGATCATT  120

Query  121  ATGGAGG  127
            | |||||
Sbjct  121  AAGGAGG  127



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5