BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484224
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03190.1 | Symbols: ASK16, SK16 | SKP1-like 16 | chr2:964214... 610 4e-174
AT3G25650.1 | Symbols: ASK15, SK15 | SKP1-like 15 | chr3:933587... 412 1e-114
AT2G20160.1 | Symbols: MEO, ASK17 | E3 ubiquitin ligase SCF com... 287 8e-77
AT1G10230.1 | Symbols: ASK18, SK18 | SKP1-like 18 | chr1:335557... 239 2e-62
> AT2G03190.1 | Symbols: ASK16, SK16 | SKP1-like 16 | chr2:964214-964901
FORWARD LENGTH=688
Length=688
Score = 610 bits (330), Expect = 4e-174
Identities = 456/516 (88%), Gaps = 12/516 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTTCGAGGTTGACGAA 60
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 19 ATGTCTTCGAACAAGATTGTGTTGACTAGCTCGGATGATGAATCGTTCGAGGTTGAGGAA 78
Query 61 GCGGTGGCTCGTAAACTGCAGATCATAGCGCACATGATTGATGACGACTGCGCCGATAAA 120
||||||||||||||| || || ||||||| |||||||| |||||||||||||||||||||
Sbjct 79 GCGGTGGCTCGTAAATTGAAGGTCATAGCACACATGATCGATGACGACTGCGCCGATAAA 138
Query 121 GCAATCCCGCTTCAAAACGTCACTGGAAAGATCCTCGCTGTGGTTATCGAGTATTGCAAG 180
|||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||
Sbjct 139 GCAATCCCGCTTGAAAACGTCACCGGAAATATCCTCGCTTTGGTTATCGAGTATTGCAAG 198
Query 181 AAACACGT--TA-ATGATGTTGATGATAGTGATG-TTGT--TGAAGAAATAAGCGAAAAT 234
|||||||| | ||||||||||||||||||||| || | ||||| || ||||||||||
Sbjct 199 AAACACGTACTTGATGATGTTGATGATAGTGATGATTCTACTGAAGCAACAAGCGAAAAT 258
Query 235 GTAGACGAGGAAGCCAAGAAAGAGCTC-GTGACTTGGGACGCAGAGTTCATGAAAGATAT 293
||| |||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||
Sbjct 259 GTAAACGAGGAAGCCAAGAACGAGCTCAG-GACTTGGGACGCAGAGTTCATGAAAGA-AT 316
Query 294 T-GATATGGAAACAATGTTCCAACTCCTTCTCGCTGCTAACTATCTCAACGTCAAA-AGT 351
| |||||||||||| | | ||||| ||||||||| ||| |||||||||||| || | |
Sbjct 317 TTGATATGGAAACAGTCATGAAACTCATTCTCGCTGTTAATTATCTCAACGTCCAAGA-T 375
Query 352 CTTCTTGATCTCACTAGCCAGACCATTGCAGATTACATCAAAGATAAGACGCCACAGGAA 411
||||||| ||||||| |||||||| |||||||| |||| ||||||| | ||||| |||||
Sbjct 376 CTTCTTGGTCTCACTTGCCAGACCGTTGCAGATCACATGAAAGATATGTCGCCAGAGGAA 435
Query 412 GTTCGAGAAATCTTTAACATCGAGAACGATTTCACGCCTGAAGAAGAGGAAGAGATTCGC 471
||||||||| |||||||||| ||||| |||| ||| ||||||||||| || | ||||||
Sbjct 436 GTTCGAGAACTCTTTAACATTGAGAATGATTACACACCTGAAGAAGAAGACGCGATTCGT 495
Query 472 AAGGAGAACGAATGGGCTTTTGAGGATCTAAATTAA 507
||||| |||| |||||||||||||||||||| |||
Sbjct 496 AAGGAAAACGCTTGGGCTTTTGAGGATCTAAAGTAA 531
> AT3G25650.1 | Symbols: ASK15, SK15 | SKP1-like 15 | chr3:9335876-9336459
REVERSE LENGTH=534
Length=534
Score = 412 bits (223), Expect = 1e-114
Identities = 418/510 (82%), Gaps = 22/510 (4%)
Strand=Plus/Plus
Query 1 ATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTTCGAGGTTGACGAA 60
|||||||| |||||||||||||||||||| ||||||| || |||||| | ||||| |||
Sbjct 1 ATGTCTTCTAACAAGATTGTGTTGACTAGTTCCGATGGCGAGTCTTTCCAAGTTGAGGAA 60
Query 61 GCGGTGGCTCGTAAACTGCAGATCATAGCGCACATGATTGATGACGACTGCGCCGA-TAA 119
| |||||| || |||||||||||| || |||| || | || |||||||| | | |||
Sbjct 61 GTGGTGGCACGAAAACTGCAGATCGTAAAGCACCTGCTCGAAGACGACTGTG-TTATTAA 119
Query 120 AGCAATCCCGCTTCAAAACGTCACTGGAAAGATCCTCGCTGTGGTTATCGAGTATTGCAA 179
| |||||| ||||||||||| || ||||| || ||| | | ||| |||||||||||||
Sbjct 120 CGAAATCCCTCTTCAAAACGTTACAGGAAATATTCTCTCCATCGTTCTCGAGTATTGCAA 179
Query 180 GAAACACGTTAATGATGTTGAT-GATAG-TGATGTTGT-TGAAGA-AATAAG-CGAA-AA 233
||||||||| | |||| || | ||| | ||||| | ||| || ||| ||| ||
Sbjct 180 GAAACACGTCGACGATG-TGGTCGAT-GATGATG-CATCTGAGGAGCCGAAGAAGAAGAA 236
Query 234 TG-TAGACGAGGAAGCCAAGAAAG-AGCTCG-TGACTTGGGACGCAGAGTTCATGAAAGA 290
| || || || || ||| || | |||| || ||||||||||||||||||||||| |
Sbjct 237 -GCCCGATGATGAGGCGAAG-CAGAATCTCGATG-CTTGGGACGCAGAGTTCATGAAAAA 293
Query 291 TATTGATATGGAAACAATGTTCCAA-CTCCTTCTCGCTGCTAACTATCTCAACGTCAAAA 349
|||||||||||||||||| || ||| ||| |||||||||||||||||||||||||| ||
Sbjct 294 TATTGATATGGAAACAATCTT-CAAGCTCATTCTCGCTGCTAACTATCTCAACGTCGAAG 352
Query 350 GTCTTCTTGATCTCACTAGCCAGACCATTGCAGATTACATCAAAGATAAGACGCCACAGG 409
||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 353 GTCTTCTTGGTCTCACTTGCCAGACTGTTGCAGATTACATCAAAGATAAGACGCCAGAGG 412
Query 410 AAGTTCGAGAAATCTTTAACATCGAGAACGATTTCACGCCTGAAGAAGAGGAAGA-G--A 466
||||||||||| ||||||| |||||||| |||||||| | ||||||||| ||||| | |
Sbjct 413 AAGTTCGAGAACTCTTTAATATCGAGAATGATTTCACACATGAAGAAGAAGAAGAAGCGA 472
Query 467 TTCGCAAGGAGAACGAATGGGCTTTTGAGG 496
||||||||||||||| |||||||||||||
Sbjct 473 TTCGCAAGGAGAACGCTTGGGCTTTTGAGG 502
> AT2G20160.1 | Symbols: MEO, ASK17 | E3 ubiquitin ligase SCF complex
subunit SKP1/ASK1 family protein | chr2:8699672-8700124
REVERSE LENGTH=453
Length=453
Score = 287 bits (155), Expect = 8e-77
Identities = 186/201 (93%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTTCGAGGTTGACGAA 60
||||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 1 ATGTCTTCGAAGAAGATTGTGTTGACTAGCTCCGATGATGAATGTTTTGAGATTGACGAA 60
Query 61 GCGGTGGCTCGTAA-ACTGCAGATCATAGCGCACATGATTGATGACGACTGCGCCGATAA 119
|||||||||||||| | ||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 61 GCGGTGGCTCGTAAGA-TGCAGATGGTAGCGCACATGATCGATGACGATTGCGCCGATAA 119
Query 120 AGCAATCCCGCTTCAAAACGTCACTGGAAAGATCCTCGCTGTGGTTATCGAGTATTGCAA 179
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 120 AGCAATCCGGCTTCAAAACGTCACTGGAAAGATCCTCGCTATCATTATCGAGTATTGCAA 179
Query 180 GAAACACGTTAATGATGTTGA 200
|||||||||| ||||||||||
Sbjct 180 GAAACACGTTGATGATGTTGA 200
> AT1G10230.1 | Symbols: ASK18, SK18 | SKP1-like 18 | chr1:3355571-3356359
FORWARD LENGTH=789
Length=789
Score = 239 bits (129), Expect = 2e-62
Identities = 383/500 (77%), Gaps = 40/500 (8%)
Strand=Plus/Plus
Query 1 ATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTTCGAGGTTGACGAA 60
|||||||| ||||||||| ||||||| || ||||||| || ||||||||| | ||||||
Sbjct 105 ATGTCTTCTAACAAGATTTTGTTGACGAGTTCCGATGGCGAGTCTTTCGAGATCGACGAA 164
Query 61 GCGGTGGCTCGTAAACTGCAGATCATAGCGCACATGATTGATGACGACTGCGCCGATAAA 120
|||||||| ||||| | | |||||||| ||||||||| || || ||||||||| | ||
Sbjct 165 GCGGTGGCGCGTAAGTTTCTGATCATAGTGCACATGATGGAGGATAACTGCGCCGGTGAA 224
Query 121 GCAATCCCGCTTCAAAACGTCACTGGAAAGATCCTCGCTGTGGTTATCGAGTATTGC-AA 179
||||| |||||| |||| ||||| || | |||||| | | | |||||||| || ||
Sbjct 225 GCAATTCCGCTTGAAAATGTCACCGGGGATATCCTCTCCAAGATAATCGAGTA-CGCGAA 283
Query 180 GAAACACGTTAATGATGTTGATGATAGTGATGTTGTTGAAGAAATAAGCGAAAATGTAGA 239
|| |||| | | | ||| | | | | ||||| || | || | |||
Sbjct 284 GATGCACG-TCA--A---TGA--A-CCT-A----G-TGAAG-AA-GA-CG---A---AGA 319
Query 240 CGAGGAAGCCAAGAAAGAGCTCGT-GACT--TGGGACGC-AGAGTTCAT-G-AAAGATAT 293
|||||| || ||| |||| || | |||| |||||||| | ||||||| | |||| ||
Sbjct 320 CGAGGAGGCGAAG-AAGA-ATC-TAGACTCGTGGGACGCTA-AGTTCATGGAAAAGCTA- 374
Query 294 TGATATGGAAACAATGTTCCAACTCCTTCTCGCTGCTAACTATCTCAACGTCAAAAGTCT 353
||| |||| || || ||| || || |||||||||| ||||| || ||| || || | ||
Sbjct 375 -GATCTGGAGACCATCTTCAAAATCATTCTCGCTGCCAACTACCTAAACTTCGAAGGACT 433
Query 354 TCTTGATCTCACTAGCCAGACCATTGCAGATTACATCAAAGATAAGACGCCACAGGAAGT 413
||| | | || |||||||||| |||| ||||||||||| || || || ||| |||||||
Sbjct 434 TCTCGGTTTCGCTAGCCAGACGGTTGCTGATTACATCAAGGACAAAACACCAGAGGAAGT 493
Query 414 TCGAGAAATCTTT-AACATCGAGAACGATTTCACGCCTGAAGAAGAGGAAGAGATTCGCA 472
||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 ACGAGAGAT-TTTCAACATCGAGAACGATTTCACGCCTGAAGAAGAGGAAGAGATTCGCA 552
Query 473 AGGAGAACGAATGGGCTTTT 492
||||||| | ||| |||||
Sbjct 553 AGGAGAATGCTTGGACTTTT 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24212858854
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5