BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484226
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03210.1 | Symbols: FUT2, ATFUT2 | fucosyltransferase 2 | ch... 2420 0.0
> AT2G03210.1 | Symbols: FUT2, ATFUT2 | fucosyltransferase 2 |
chr2:968335-970018 REVERSE LENGTH=1620
Length=1620
Score = 2420 bits (1310), Expect = 0.0
Identities = 1523/1626 (94%), Gaps = 14/1626 (1%)
Strand=Plus/Plus
Query 1 ATGAGAATCACAGAGATCTTAGCTTTTTTCATGGTTTTAATCCCTGTCTTACTAGTAATC 60
|||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||
Sbjct 1 ATGAGAATCACAGAGATCTTAGCTTTGTTCATGGTTTTAGTCCCTGTCTCGCTAGTAATC 60
Query 61 GTAGCCATGTTTGGATATGATCAAGGAAATGGTTTTGTAGAGGCATCAAGAATCATACGA 120
|||||||||||||||||||||||||||||||| |||||| | ||||| ||| |||| |
Sbjct 61 GTAGCCATGTTTGGATATGATCAAGGAAATGGCTTTGTACAAGCATCTAGATTCAT---A 117
Query 121 ATGGAACCGGAACCAAACGTGACAT-C-C-TCAGATGATTCAGCA-T--TGCAGAGAGAT 174
| || ||||||||| ||||||| | | |||||||||||| || | |||||||||||
Sbjct 118 A--CAA-TGGAACCAAATGTGACATCCTCATCAGATGATTCATCACTAGTGCAGAGAGAT 174
Query 175 CAGGAACAAAAAGATTCTGTAGATTTGTCTCTGCTTGGAGGACTACTTGTTTCTGGTTTC 234
|| ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct 175 CAAGAACAAAAAGATTCTGTAGATATGTCTCTGCTTGGAGGGCTACTTGTATCTGGTTTC 234
Query 235 AAAAAAGAGTCTTGCTTGAGTAGATACCAATCTTACCTCTATCGTAAAGCTTCACCGTAT 294
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 235 AAGAAAGAGTCTTGCTTGAGTAGATACCAATCTTACCTCTACCGTAAAGCTTCACCGTAT 294
Query 295 AGACCTTCTTTACATCTACTTTCGAAGCTTAGAGCTTACGAAGAGCTTCATAAACGATGT 354
| |||||| || |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 295 AAACCTTCGTTGCATCTACTTTCGAAGCTTAGAGCTTACGAAGAGCTTCATAAAAGATGT 354
Query 355 GGACCGGGAACGAGACCGTATACCAATGCAGAGAGACTGCTTAAACCGAAACAAACTGGT 414
||||||||||| |||| ||||||||||||||| ||| ||||||||| ||||||||| |||
Sbjct 355 GGACCGGGAACAAGACAGTATACCAATGCAGAAAGATTGCTTAAACAGAAACAAACAGGT 414
Query 415 GA-TTCAGAACCAGAAGGATGCAAGTATGTTGTTTGGATGTCGTTTAGCGGATTAGGAAA 473
|| | ||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAGAT-GGAATCACAAGGATGCAAGTATGTTGTTTGGATGTCGTTTAGCGGATTAGGAAA 473
Query 474 CAGGATTATCAGTATTGCCTCTGTGTTTCTGTATGCAATGTTGACGGATAGGGTCTTGCT 533
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 474 CAGGATTATCAGTATTGCTTCTGTGTTTCTGTATGCAATGTTGACAGATAGAGTCTTGCT 533
Query 534 TGTTGAAGGAGGAGAGCAATTCGCGGATCTATTCTGCGAACCATTCCTCGATACCACTTG 593
|||||||||||| || || ||||||||| ||||||||||||| |||||||||||||||||
Sbjct 534 TGTTGAAGGAGGGGAACAGTTCGCGGATTTATTCTGCGAACCGTTCCTCGATACCACTTG 593
Query 594 GCTACTACCGAAAGATTTCACCTTAACTAGTCAGTTCAGTGGCTTTGGTCAAAACTCAGC 653
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 594 GTTACTACCGAAAGATTTCACCTTAGCTAGTCAGTTCAGTGGCTTTGGTCAAAACTCAGC 653
Query 654 TCATTGCCATGGAGATATGCTGAAGAAGAAACTGATTAACGAATCTTCTGTTTTGTCTCT 713
||| |||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||||
Sbjct 654 TCACTGCCATGGAGATATGCTGAAGAGGAAACTGATTAATGAATCCTCTGTTTCGTCTCT 713
Query 714 GTCTCATCTCTATCTTCATCTAGCTCATGATTACAACGACCACGACAAAATGTTCTTCTG 773
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 714 GTCTCATCTCTATCTTCATCTAGCTCATGACTACAATGAGCACGACAAAATGTTCTTCTG 773
Query 774 CGCAGAAGATCAGAATCTCTTAGAGAATGTTCCTTGGTTGATCATGAGGACAAACAACTT 833
| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 774 TGAAGAAGATCAAAATCTCTTAAAGAATGTTCCTTGGTTGATCATGAGGACAAACAACTT 833
Query 834 CTTTGCACCGTCTCTCTTCTTGATCCCTTCTTTCGAGGAAGAGCTCGGTATGATGTTTCC 893
||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||
Sbjct 834 CTTTGCACCGTCTCTTTTCTTGATTTCTTCTTTCGAAGAAGAGCTCGGTATGATGTTTCC 893
Query 894 CAAGAAAGGAACGGTATTTCACCATTTGGGTCGTTACCTTTTCCATCCTTCGAATCAAGT 953
| ||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 894 CGAGAAAGGAACGGTTTTTCACCATTTAGGTCGTTACCTTTTCCATCCTTCAAATCAAGT 953
Query 954 CTGGGGACTAATCACAAGATACTATCAAGCTTACTTAGCCAAAGCTGATGAGAGGATTGG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 954 CTGGGGACTAATCACAAGATACTATCAAGCTTACTTAGCCAAAGCTGATGAAAGGATTGG 1013
Query 1014 TCTTCAAATAAGAGTCTTTGATGAGAAATCCGGCGTATCTCCTCAAGTCACAAAGCAAAT 1073
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1014 TCTTCAAATAAGAGTCTTTGATGAGAAATCCGGCGTATCTCCTCGAGTCACAAAGCAAAT 1073
Query 1074 CATTTCGTGCGTTCAAAACGAGGATTTGTTACCGAAACTAAGCAAAGGAGAAGAACAACA 1133
||||||||| |||||||||||| || ||||||||| |||||||||||| ||||||||| |
Sbjct 1074 CATTTCGTGTGTTCAAAACGAGAATCTGTTACCGAGACTAAGCAAAGGTGAAGAACAATA 1133
Query 1134 CAAGCAGCCATCAGAAGAAGACTCGAAACTCAAATCGGTCTTGATCACTTCTTTAACAAC 1193
||||||||||||||||||||| | |||||||||||| |||||| |||| |||||||||||
Sbjct 1134 CAAGCAGCCATCAGAAGAAGAGTTGAAACTCAAATCTGTCTTGGTCACCTCTTTAACAAC 1193
Query 1194 AGGATACTTTGAGATCTTGAAAACAATGTATTGGGAAAATCCAACTGTAACAGGAGAAGT 1253
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1194 AGGATACTTTGAGATCTTGAAAACAATGTATTGGGAAAATCCAACTGTAACAAGAGATGT 1253
Query 1254 GATTGGAATACATCAGCCAAGTCATGAAGGTCATCAACAAACAGAGAAGCTAATGCATAA 1313
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1254 GATTGGAATACATCAGCCAAGTCATGAAGGACATCAACAAACAGAGAAGCTAATGCATAA 1313
Query 1314 CAGGAAAGCTTGGGCAGAGATGTACTTACTTAGCTTAACCGATAAGTTGGTTATTAGTGC 1373
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1314 CAGGAAAGCTTGGGCAGAGATGTACTTACTCAGCTTAACGGATAAGTTGGTTATTAGTGC 1373
Query 1374 TTGGTCTACATTTGGTTATGTAGCTCAAGGACTTGGAGGATTAAGAGCTTGGATTCTGTA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TTGGTCTACATTTGGTTATGTAGCTCAAGGACTTGGAGGATTAAGAGCTTGGATTCTGTA 1433
Query 1434 TAAACAAGAGAATCAAACCAACCCAAATCCACCTTGTGGTAGAGCTATGTCACCAGATCC 1493
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1434 TAAACAAGAGAATCAAACCAACCCAAATCCACCTTGCGGTAGAGCTATGTCACCAGATCC 1493
Query 1494 TTGTTTCCATGCCCCTCCTTACTACGATTGCAAAGCTAAGCAAGGAACCGACACCGGTAA 1553
|||||||||||| ||||||||||| ||||||||||| ||| ||||||| ||||| |||||
Sbjct 1494 TTGTTTCCATGCTCCTCCTTACTATGATTGCAAAGCAAAGAAAGGAACTGACACTGGTAA 1553
Query 1554 TGTTGTCCCGCATGTTAGACATTGTGAAGATATTAGCTGGGGACTTAAGCTTGTTGACAA 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TGTTGTCCCGCATGTTAGACATTGTGAAGATATTAGCTGGGGACTTAAGCTTGTTGACAA 1613
Query 1614 CTCTTA 1619
|| |||
Sbjct 1614 CTTTTA 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5