BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484228

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G03230.1 | Symbols:  | GCK domain-containing protein | chr2:...   520    6e-147


> AT2G03230.1 | Symbols:  | GCK domain-containing protein | chr2:972917-973375 
FORWARD LENGTH=459
Length=459

 Score =  520 bits (281),  Expect = 6e-147
 Identities = 339/368 (92%), Gaps = 0/368 (0%)
 Strand=Plus/Plus

Query  41   AAGGAGGAGATTCATCTGCTGCTTCGCAAGATCCGAACAAATCCAAAACAGTAAGTTCTG  100
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  74   AAGGAGGAGATTCATCTGCTGCTTCGGAAGATCCGAACAAATCCAAAACAGTAAGTTCTG  133

Query  101  ATGACAATTTGAATGAAACTAATAAGGAGAAAGAGGAAGAAGATTGTGATGAGTGTTGGC  160
            ||||  |||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  134  ATGATGATTTGAGTGAGACTAACAAGGAGAAAGAGGAAGAAGATTGTGAAGAGTGTTGGC  193

Query  161  TTAGTCGGTTTTTGAAGAAAGGTGGGTGCAAGGATGCATTCATAGAAGTTGATCACTGTT  220
            ||||||||| |||||| |||||||  ||||| ||||||||||||||||||||||| ||| 
Sbjct  194  TTAGTCGGTATTTGAAAAAAGGTGATTGCAAAGATGCATTCATAGAAGTTGATCATTGTA  253

Query  221  GGGAAGTGAAAGATGGCGGCACGAATTGTCGAGATGCTAGATTGAAGCTGAATACATGTA  280
            ||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct  254  GGGAAGTGAAAGATGACGGCACGAACTGTCGAGATGCTAGATTGAAGCTGATTACATGTA  313

Query  281  TGTATGCTAACGTCGATTACTATGGACAGTATCTGGCGATGCAGAAAGAGAGGTTTACTC  340
            ||||| |||||||||||||||| |||| || ||| || ||||||||||||| |   ||||
Sbjct  314  TGTATACTAACGTCGATTACTACGGACCGTTTCTAGCAATGCAGAAAGAGATGCGGACTC  373

Query  341  AGTCGTTAAAGGAGTTGGAAAAAGGGGAGGAGGCAGCCGCTGCGGCCaagaagaaggaag  400
            |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct  374  AGTCGTTAAAGGAGTTGGAACAAGGGGAGGAGGCAGCCGCTGCGGCGAAGAAGAAGGAAG  433

Query  401  aagaagaa  408
            ||||||||
Sbjct  434  AAGAAGAA  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5