BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484240

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G03320.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   392    8e-109


> AT2G03320.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 4 Blast hits to 4 
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr2:1007382-1007945 FORWARD LENGTH=306
Length=306

 Score =  392 bits (212),  Expect = 8e-109
 Identities = 254/273 (93%), Gaps = 8/273 (3%)
 Strand=Plus/Plus

Query  2    GCATGTTTGTTATTTCGTGCTGTACATGGCTTCAAAAGTTTCTGAAAAACTTAGCTTCCG  61
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  36   GCATGTTTATTATTTCGTGCTGTGCATGGCTTCAAAAGTTTCTGAAAAACTTAGCTTCCG  95

Query  62   AAAATCAGCAGAGGAACCATACCTTCCTATTGCTGCTACTACT--T-TGATATCACATGG  118
            |||| |||||||||||||| ||||||||||||||||| |||||  | ||||||||| |  
Sbjct  96   AAAAGCAGCAGAGGAACCAAACCTTCCTATTGCTGCTGCTACTACTCTGATATCACCTC-  154

Query  119  TACAGGTAGAGTAGACTTTGTCTTTGTGGACAATGAAGCACAAGAGATAATAAATGTTTC  178
             | |||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct  155  -A-AGGTCGAGTAGACTTTGTCTTTATGGACAATGAAGCACAAGAGATAAGAAATGTTTC  212

Query  179  GCCGACATCACAAGAACTTCCATCTTCTACTACTACTTCTATTTCACATAGTAATGAACG  238
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  213  GCCGACATCACAAGAACTTCCATCTTCTTCTACTACTTCTATTTCACATAGTAATGAACG  272

Query  239  ATCTAATTCGT-TACGATCTATCGTTATTCAGT  270
            ||||||||| | |||||||||||||||||||||
Sbjct  273  ATCTAATTC-TCTACGATCTATCGTTATTCAGT  304



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12365866254


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5