BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484241
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11810.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1410 0.0
AT2G03330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 719 0.0
> AT3G11810.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G03330.1);
Has 141 Blast hits to 141 proteins in 21 species: Archae -
0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 131; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:3727796-3729031
FORWARD LENGTH=1236
Length=1236
Score = 1410 bits (763), Expect = 0.0
Identities = 971/1067 (91%), Gaps = 32/1067 (3%)
Strand=Plus/Plus
Query 1 TACGCTTCAATGGCGACTCCATCACAATCTCTATCTCCTCCTCCTCCCA-TGAATCTCTG 59
||||||||||||||||||||| | | ||||||| | |||||||| ||| ||||||||||
Sbjct 15 TACGCTTCAATGGCGACTCCAACTCCATCTCTA--T-CTCCTCCT-CCATTGAATCTCTG 70
Query 60 GGTAATCTTATCAGAATCAAAACGAATCATCAACGCTCACTCACGTCActtcttagctct 119
| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 71 GATAATCTTATCAGAATCAAAACGAATCATCAACGCACACTCACGTCACTTCCTAGCTCT 130
Query 120 ctccgttctcttcctccttcctctctgcttctccGTCACAGTTTACCCTTCCGTCTTCCG 179
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 131 CTCCGTTCTCTTCCTCCTCCCTCTCTGCTTCTCCATCACAGTTTACCCTTCCGTCTTCCT 190
Query 180 TCTCATCACCGATCAATCCTCCGCTTCTCACAACAGCGTCTCTCTCCT-C-C-GCGGACT 236
|||||||||||||||||| |||||||||||||||| |||||||||||| | | |||||||
Sbjct 191 TCTCATCACCGATCAATCATCCGCTTCTCACAACACCGTCTCTCTCCTCCGCGGCGGACT 250
Query 237 CCAC--CAA-AAC---GATGACGTCGATACTAAAACAACGGTCTTGCTTCTGATTGGTTA 290
|||| ||| ||| |||||| ||||||| |||||||||||||| ||| | || |||||
Sbjct 251 CCACAACAACAACGATGATGACATCGATACCAAAACAACGGTCTTACTTGTAATCGGTTA 310
Query 291 CATCGTTGTTGTCACCGTCTTCAATCTCTTAGCTATTGGATCAATCGCTTATAGTGTGTT 350
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CATCGTTGTTATCACCGTCTTCAATCTCTTAGCTATTGGATCAATCGCTTATAGTGTGTT 370
Query 351 TCAAGGTTTCTATGGAAGACCTGTGAAATTGATCTCTGCAGTGAAATCGAGCGTT-GCTT 409
|||||| |||||||| |||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 371 TCAAGGATTCTATGGTAGACCTGTGAAATTGAACTCTGCAGTGAAATCGAGC-TTCGCTT 429
Query 410 CGTTTTTACCTCTTCTCGCTACTTTGATTTCATCGAAT-TTCATAGTTTT-GGGGGTTTT 467
||||||||||||||||||||||||||| ||||||||| || |||||||| ||||| |||
Sbjct 430 CGTTTTTACCTCTTCTCGCTACTTTGACCTCATCGAATCTT-ATAGTTTTAGGGGG-TTT 487
Query 468 TATGATTCTAGGGATTTTAGCTTTCTTGTTGACTAAGGTAATTGAGATCA-TCCCCG-GT 525
| |||||| |||||||||||||||||||||| |||| | ||||||| || |||| | ||
Sbjct 488 TCTGATTCCAGGGATTTTAGCTTTCTTGTTGGTTAAGCTTATTGAGACCATTCCCGGTGT 547
Query 526 -G---TCTATTACTCATCTTCGTATTTCCAAGGTTTTATAATCGTAGTAACGATTATGTC 581
| || ||||| | |||||||||||||||||||| ||| | ||||||||||||| ||
Sbjct 548 AGAATTCGATTACGCCTCTTCGTATTTCCAAGGTTTCGTAACCCTAGTAACGATTATCTC 607
Query 582 GATTGCAATTACGA-TTAAGCTCTATGTGAATTGGATTCTTGCTTGGGTTGTTGTTGTTG 640
|||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GATTGCGATTGC-AGTTAAGCTCTATGTGAATTGGATTCTTGCTTGGGTTGTTGTTGTTG 666
Query 641 TTGAATCAGCTTGGGGTTTAACACCATTGAAGAGAAGTAATA-GCTTGGTTAAAGGAATG 699
||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||
Sbjct 667 TTGAATCAGCTTGGGGTATAACACCGTTGAAGAGAAGTAA-ACGCTTGGTTAAAGGAATG 725
Query 700 AAAGGTGTTTCTTTGTCGATAATCTTCTTCTTCGCTTCAACCGAATCGATTCTCGTATGG 759
||| ||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 726 AAATGTGCTTCTTTGTCGATTATCTTCTTCTTCGCTTCAACGGAATCGATTCTCGTTTGG 785
Query 760 ATTAGTACCTTAGCCGCCTCTGCTCAGCTCATCGATGATGAAAATGGTGGGAAGTTATGG 819
||||||||||||||||||| ||||||||||| |||| | || ||||||||||||| |||
Sbjct 786 ATTAGTACCTTAGCCGCCTATGCTCAGCTCAACGATAACGAGAATGGTGGGAAGTCGTGG 845
Query 820 ACGA-ATGCTTTCTTTGTGGTACAGATTGTTATCACGTCTGCGTTTTTAACGCTTTTGAC 878
|| | ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct 846 AC-AGATGCTTTCTTTGTGGTACAGATTGTGATCACGTCTGCGTTTCTAACGCTGTTGAC 904
Query 879 GCTGTATAATCTTACGGCGACTACTGTGATGTATATGTATTGTAAAGCTGTTCATGGTGA 938
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GTTGTATAATCTTGCGGCGACTACTGTGATGTATATGTATTGTAAAGCTGTTCATGGTGA 964
Query 939 ACTTGTTTGGGAGATAGCTGAAGAGTTTGCTAGAGATTATGTGAGCTTGCCTTTTGATGA 998
||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 965 GCTTGTTTGGGAGATAGCCGAAGAGTTTGCTAGAGAATATGTTAGCTTGCCTTTTGATGA 1024
Query 999 TGGTAAAGTTCCTCACTTGGTCTCTGTAGCTTACAACAACATCTGAT 1045
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 TGGTAAAGTTCCTCACTTGGTCTCTGTAGCTTACAACAACATCTGAT 1071
Score = 135 bits (73), Expect = 7e-31
Identities = 110/126 (87%), Gaps = 10/126 (8%)
Strand=Plus/Plus
Query 1042 TGATCTTGTTTGTTTTGTTGTTATGTTTCAAGTTCGTGTTCGAAAAATCTGGTCTT-TAT 1100
|||||||||||||||||||||||||||| ||| | ||||| | |||| |||||||| | |
Sbjct 1109 TGATCTTGTTTGTTTTGTTGTTATGTTTTAAGGTAGTGTTTGGAAAA-CTGGTCTTCT-T 1166
Query 1101 GTATGATTAA-GCAAGTTTGTAA--CTT-T--GTATATTGATCTTCTTTACTGTTCTTGA 1154
|||||| ||| |||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1167 GTATGA-TAATGCAAGTTTGTAACCCTTGTACGTATATTGATCTTCTTTACTGTTCTTGA 1225
Query 1155 GATTTG 1160
|| |||
Sbjct 1226 GACTTG 1231
> AT2G03330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G11810.1);
Has 370 Blast hits to 370 proteins in 33 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 368; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:1008460-1014122
FORWARD LENGTH=1158
Length=1158
Score = 719 bits (389), Expect = 0.0
Identities = 528/594 (89%), Gaps = 13/594 (2%)
Strand=Plus/Plus
Query 460 GGGGTTTTTATGATTCTAGGGATTTTAGCTTTCTTGTTGACTAAGGTAATTGAGATCA-T 518
|||| |||| |||||| |||||||||||||||||||||| |||| | |||||||||| |
Sbjct 569 GGGG-TTTTCTGATTCCAGGGATTTTAGCTTTCTTGTTGGTTAAGCTTATTGAGATCATT 627
Query 519 CCCCG-GT-G---TCTATTACTCATCTTCGTATTTCCAAGGTTTTATAATCGTAGTAACG 573
||| | || | || ||||| | |||||||||||||||||||| ||| | ||||||||
Sbjct 628 CCCGGTGTAGAATTCGATTACGCCTCTTCGTATTTCCAAGGTTTCGTAACCCTAGTAACG 687
Query 574 ATTATGTCGATTGCAATTACGATTAAGCTCTATGTGAATTGGATTCTTGCTTGGGTTGTT 633
||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 688 ATTATCTCGATTGCGGTTGCGGTTAAGCTCTATGTGAATTGGATTCTTGCTTGGGTTGTT 747
Query 634 GTTGTTGTTGAATCAGCTTGGGGTTTAACACCATTGAAGAGAAGTAATA-GCTTGGTTAA 692
|||||||||||||| ||||||||| ||||||| ||||||| |||||| | ||||||||||
Sbjct 748 GTTGTTGTTGAATCGGCTTGGGGTATAACACCGTTGAAGACAAGTAA-ACGCTTGGTTAA 806
Query 693 AGGAATGAAAGGTGTTTCTTTGTCGATAATCTTCTTCTTCGCTTCAACCGAATCGATTCT 752
|||||||||| ||| |||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 807 AGGAATGAAATGTGCTTCTTTGTCGATTATCTTCTTCTTCGCTTCAACGGAATCGATTCT 866
Query 753 CGTATGGATTAGTACCTTAGCCGCCTCTGCTCAGCTCATCGATGATGAAAATGGTGGGAA 812
||| |||||||||||||||||||||| ||||| ||||| |||| |||| |||||||||||
Sbjct 867 CGTTTGGATTAGTACCTTAGCCGCCTATGCTCTGCTCAACGATAATGAGAATGGTGGGAA 926
Query 813 GTTATGG-ACGAATGCTTTCTTTGTGGTACAG-ATTGTTATCACGTCTGCGTTTTTAACG 870
|| ||| | | | |||||||| | |||||| |||| |||||||| ||||| |||||
Sbjct 927 GTCGTGGAAAG-GTTCTTTCTTTTTTGTACAGAATTG-GATCACGTCCGCGTTGCTAACG 984
Query 871 CTTTTGACGCTGTATAATCTTACGGCGACTACTGTGATGTATATGTATTGTAAAGCTGTT 930
|| |||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 985 CTATTGATGTTGTATAATCTTGTGGCGACTACTGTGATGTATATGTATTGTAAAGCTGTT 1044
Query 931 CATGGTGAACTTGTTTGGGAGATAGCTGAAGAGTTTGCTAGAGATTATGTGAGCTTGCCT 990
|||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1045 CATGGTGAGCTTGTTGGGGAGATAGCTGAAGAGTTTGCTAGAGAATATGTTAGCTTGCCT 1104
Query 991 TTTGATGATGGTAAAGTTCCTCACTTGGTCTCTGTAGCTTACAACAACATCTGA 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TTTGATGATGGTAAAGTTCCTCACTTGGTCTCTGTAGCTTACAACAACATCTGA 1158
Score = 126 bits (68), Expect = 4e-28
Identities = 93/105 (89%), Gaps = 1/105 (1%)
Strand=Plus/Plus
Query 247 GATGACGTCGATACTAAAACAACGGTCTTGCTTCTGATTGGTTACATCGTTGTTGTCACC 306
|||||| ||||||| ||||||| |||||| |||| || |||| |||||||||| |||||
Sbjct 472 GATGACATCGATACCAAAACAAAGGTCTTAATTCTAATCGGTTTCATCGTTGTTATCACC 531
Query 307 GTCTTCAATCTCTTAGCTATTGGATCAATCGCTTATAGTGTGTTT 351
|||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct 532 GTCTTCTATCTCTTAGCTATTGGATCAATCGCTTATAGGG-GTTT 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56927418030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5