BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484242
Length=1909
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03340.1 | Symbols: WRKY3 | WRKY DNA-binding protein 3 | chr... 2542 0.0
AT1G13960.1 | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr... 440 2e-122
> AT2G03340.1 | Symbols: WRKY3 | WRKY DNA-binding protein 3 | chr2:1014350-1017148
REVERSE LENGTH=2128
Length=2128
Score = 2542 bits (1376), Expect = 0.0
Identities = 1574/1668 (94%), Gaps = 20/1668 (1%)
Strand=Plus/Plus
Query 104 TGTGAGTTGGGTTTGTTAAAGTTTTATCCTCTTTGTTCTCAAAATC-GGGATCGATGGCG 162
|||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 159 TGTGAGTTGGGTTTGTTAAAGTTTTATCCTTTTTGTTCTCAAAATCAAGAATCGATGGCG 218
Query 163 GAGAAAGAAGAAAAAGAACCGTCAAAGTTAAAATCATCCACCGGAGTTACACGGCCAACG 222
||||| |||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 219 GAGAAGGAAGAAAAAGAACCATCGAAGTTAAAATCATCCACCGGAGTTTCACGGCCAACG 278
Query 223 ATCGCACTTCCTCCTCGACCGTTTAGTGAAATGTTTTTTAGCGGTGGTGTTGGGTTTAGT 282
|| |||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||
Sbjct 279 ATTTCACTACCTCCTCGACCGTTTGGTGAAATGTTTTTTAGCGGTGGCGTTGGATTTAGT 338
Query 283 CCTGGTCCTATGACTCTTGTCTCAAATTTGTTCTCTGATCCTGATGAATTCAAGTCTTTC 342
||||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 339 CCTGGACCAATGACTCTCGTCTCAAATTTATTCTCTGATCCTGATGAGTTCAAGTCTTTC 398
Query 343 TCTCAACTTCTT-GCCGGAGCTATGGCTTCTCCGGCTGCAGCTGCTGTTGCCGCCGCTGC 401
||||| ||| || || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 399 TCTCAGCTT-TTAGCTGGAGCTATGGCTTCTCCGGCGGCAGCTGCTGTTGCCGCCGCTGC 457
Query 402 TGTTGTTGCTACTGCTGCTCATCATCAGACACCTGTGAGCTCTGTCGGTGATGGCGGTGG 461
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TGTGGTTGCTA---CTGCTCATCATCAGACACCTGTGAGCTCTGTCGGTGATGGCGGTGG 514
Query 462 AAGCGGTGGTGATGTTGACCCGAGGTTTAAGCAGAGTAGACCAACGGGATTGATGATTAC 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 515 AAGCGGTGGTGATGTTGACCCGAGGTTTAAGCAGAGTAGACCAACGGGATTGATGATAAC 574
Query 522 TCAGCCACCGGGGATGTTTACTGTACCGCCGGGATTAAGTCCGGCGACGCTTTTGGATTC 581
||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 575 TCAACCACCGGGGATGTTTACTGTACCGCCGGGGTTAAGTCCGGCTACTCTTTTGGATTC 634
Query 582 TCCGAGCTTCTTTGGTCTTTTTTCACCTCTTCAGGGAACATTTGGTATGACACATCAACA 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 TCCGAGCTTCTTTGGTCTTTTTTCACCTCTTCAGGGAACATTTGGTATGACACATCAACA 694
Query 642 AGCTTTAGCACAAGTCACTGCACAAGCAGTTCAAGGCAATAATGTTCATATGCAGCAAT- 700
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 AGCTTTAGCACAAGTCACTGCACAAGCAGTTCAAGGCAATAATGTTCATATGCAGCAATC 754
Query 701 -C-ACAATCTGAATATCCTTC--CT---CTac-acaacaacaacaacaac-a-aa-cTTC 749
| |||||||||||||||||| || | || ||||||||||||||||| | || ||||
Sbjct 755 ACAACAATCTGAATATCCTTCTTCTACACAACAACAACAACAACAACAACAACAAGCTTC 814
Query 750 ATTGACTGAGATTCCGTCATTTTCTTCTGGACCTCGGTCTCAGATTCGAGCCTCGGTTCA 809
||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 815 ATTGACTGAGATTCCATCATTTTCTTCTGCACCTAGGTCTCAGATTCGAGCCTCGGTTCA 874
Query 810 AGACACATCGCAGGGACAGAGAGAAACTTCGGAGATATCTGTCTTTGAGCATCGGTCACA 869
||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 875 AGAAACATCGCAGGGTCAGAGAGAGACTTCGGAAATATCTGTCTTTGAGCATCGGTCACA 934
Query 870 GCCTCAAAATGCTGACAAACCAGCTGATGATGGATACAACTGGCGGAAATATGGGCAGAA 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GCCTCAAAATGCTGACAAACCAGCTGATGATGGATACAACTGGCGGAAATATGGGCAGAA 994
Query 930 GCAAGTGAAAGGGAGCGATTTTCCGCGGAGTTATTACAAATGTACGCATCCAG-TGTGTC 988
||||||||| |||||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 995 GCAAGTGAAGGGGAGCGATTTTCCTCGGAGTTATTACAAATGTACGCATCCAGCT-TGTC 1053
Query 989 CTGTCAAGAAGAAGGTGGAGAGGTCACTCGATGGACAAGTAACGGAAATCATCTACAAGG 1048
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 CTGTCAAGAAGAAAGTGGAGAGGTCACTCGATGGACAAGTAACGGAAATCATCTACAAGG 1113
Query 1049 GTCAGCACAATCATGAACTTCCTCAAAAGCGCGGTAACAATAACGGGAATTCTAAAAGTT 1108
|||| ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1114 GTCAACACAATCATGAGCTTCCTCAAAAGCGCGGTAACAATAACGGGAGTTGTAAAAGTT 1173
Query 1109 CTGATATTGCAACTCAGTTTCAAACCAGTAATAGCAGTCTCAACAAGAGTAAGAGGGACC 1168
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1174 CTGATATTGCAAATCAGTTTCAAACAAGTAATAGCAGTCTCAACAAGAGTAAGAGGGACC 1233
Query 1169 AGGAAACAAGCCAAGTTACAACAACAGAGCAGATGTCTGAAGCAAGTGATAGCGAGGAGG 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 AGGAAACAAGCCAAGTTACAACAACAGAGCAGATGTCTGAAGCAAGTGATAGCGAGGAGG 1293
Query 1229 TTGGTAATGCAGAGACTACTGTGGGAGAAAAACACAAAGATGAGCCTGATCCCAAGAGAA 1288
|||| ||||||||||||| ||||||||||| ||| | |||||||||||||||||| |||
Sbjct 1294 TTGGGAATGCAGAGACTAGTGTGGGAGAAAGACATGAGGATGAGCCTGATCCCAAGCGAA 1353
Query 1289 GAAATACAGAAGTTCGGGTTTCAGAACCAGTTGCTTCATCGCATAGAACTGTGACAGAGC 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 GAAATACAGAAGTTCGGGTTTCAGAACCAGTTGCTTCATCGCATAGAACTGTGACAGAGC 1413
Query 1349 CTAGAATTATTGTCCAAACGAAGAGTGAAGTTGACCTCTTAGATGATGGATATAGGTGGC 1408
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1414 CTAGGATTATTGTCCAAACGACGAGTGAAGTTGACCTCTTAGATGATGGATATAGGTGGC 1473
Query 1409 GCAAGTATGGTCAGAAAGTAGTCAAAGGAAATCCTTATCCAAGGAGCTACTATAAGTGTA 1468
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1474 GCAAGTATGGTCAGAAAGTAGTCAAAGGAAATCCTTATCCGAGGAGCTACTATAAGTGTA 1533
Query 1469 CGACACCGGATTGCGGAGTAAGGAAACATGTAGAGAGAGCAGCAAATGACCCGAAAGCTG 1528
| ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1534 CAACACCAGATTGCGGAGTAAGGAAACATGTAGAGAGAGCAGCAACTGACCCAAAAGCTG 1593
Query 1529 TCGTAACAACATATGAAGGGAAACATAACCACGACGTTCCAGCTGGTAGAACCAGCAGCC 1588
| ||||||||||||||||| ||||||||||| || |||||||||| ||||||||||||||
Sbjct 1594 TTGTAACAACATATGAAGGTAAACATAACCATGATGTTCCAGCTGCTAGAACCAGCAGCC 1653
Query 1589 ATCAATTAAAACCAAACAATCAACCCAACACCTCAACGGTTAACTTCAATCAACAACAGC 1648
|||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1654 ATCAGTTAAGACCAAACAATCAACACAACACCTCAACGGTTAACTTCAATCATCAACAGC 1713
Query 1649 CCGTTGCGCATTTAAGGCTTAAAGAAGAGCAAATCATTTGACAGAGAAGAAGAATACGAA 1708
| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1714 CTGTTGCACGTTTAAGGCTTAAAGAAGAGCAAATCACTTGACAGAGAAGAAGAATACGAC 1773
Query 1709 GGCGCTTGAGCTTTTGTGAGTTTGTTGAATCTTCTTTTTGGTTAATGA 1756
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1774 GGCGCTTGAGCTTTTGTGAGTTTAATGAATCTTCTTTTTGGTTAATGA 1821
Score = 255 bits (138), Expect = 8e-67
Identities = 148/153 (97%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 1757 TCTCTGGACAGAAACTCTGATATTACAGTTTCAAAAGGTATGTTCTTTTATTTCATGTTG 1816
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 TCTCTGGACAGAATCTCTGATATTACAGTTTCAAAAGGTATGTTCTTTTATTTCATGTTG 1914
Query 1817 GAATCTTTTGTGTAATCTTAAGAAGCTTTAGGAGGTAATGTAAAAAACCAGATTCAAAGT 1876
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 GAATCTTCTGTGTAATCTTAAGAAGCTTTAGGAGGTAATGTAAAAAACCAGATTCAAAGT 1974
Query 1877 TCTGGTCTTATGTGAATTCTTTTGTACATGGGA 1909
| || |||||||||||||||||||||||||||
Sbjct 1975 TATGCCCTTATGTGAATTCTTTTGTACATGGGA 2007
Score = 163 bits (88), Expect = 5e-39
Identities = 101/107 (94%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 1 AAAAATCTCTCCCATTAAAAGACTGCAGAAAGAAATATTTTTATACAAAGTGAAAGAGAG 60
||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||
Sbjct 21 AAAAATCTCTCCCATTAAAAGACTGCACAAAGAAATATTTT-ATACAAAATGAAAGAGAG 79
Query 61 AAACACGACACGAATTTTGTATAATTAAGATTATACCAAAAAATGTG 107
||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 80 AAACACGACACGAATTTTGTATAATTAAGATTACACAAAAAAAAGTG 126
> AT1G13960.1 | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr1:4776605-4779400
FORWARD LENGTH=1919
Length=1919
Score = 440 bits (238), Expect = 2e-122
Identities = 406/483 (84%), Gaps = 27/483 (6%)
Strand=Plus/Plus
Query 1123 CAGTTTCAAACCAGTAATAGCAGTCTCAACAAGAGTAAGAG-G-G-ACCAGGAA--A-CA 1176
|||||||||| | ||||||| || |||||||| |||||| | | | || ||| | |
Sbjct 972 CAGTTTCAAA-C--TAATAGC--TC-CAACAAGACTAAGAGAGAGCAACATGAAGCAGTA 1025
Query 1177 AGCCAAGTTACAACAACAGAGCAGATGTCTGAAGCAAGTGATAGCGAGGAGGTTGGTAAT 1236
|| |||| ||| ||||||||||| ||||||| |||||||| | || || |||||||||
Sbjct 1026 AGTCAAGCTACGACAACAGAGCACTTGTCTGAGGCAAGTGACGGTGAAGAAGTTGGTAAT 1085
Query 1237 GCAGAGACT-ACTGTGGGAGAAAAACACAAAG-ATGAGCCTGATCCCAAGAGAAGAAATA 1294
| ||| ||| | |||| |||| ||| | || |||||||||||||||||||||||| ||
Sbjct 1086 GGAGAAACTGA-TGTGAGAGAGAAAGA-TGAGAATGAGCCTGATCCCAAGAGAAGAAGTA 1143
Query 1295 CAGAAGTTCGGGTTTCAGAACCAG-T--TGCTTCATCGCATAGAACTGTGACAGAGCCTA 1351
||||||||||| |||||||||||| | |||| | || ||||||||||||||||||||||
Sbjct 1144 CAGAAGTTCGGATTTCAGAACCAGCTCCTGCTGCTTCACATAGAACTGTGACAGAGCCTA 1203
Query 1352 GAATTATTGTCCAAACGAAGAGTGAAGTTGACCT-CTTAGATGATGGATATAGGTGGCGC 1410
|||||||||||||||||| |||||||||||| || || |||||||||||||||||||||
Sbjct 1204 GAATTATTGTCCAAACGACGAGTGAAGTTGATCTTCT-AGATGATGGATATAGGTGGCGT 1262
Query 1411 AAGTATGGTCAGAAAGTAGTCAAAGGAAATCCTTATCCAAGGAGCTACTATAAGTGTACG 1470
|| ||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||| ||
Sbjct 1263 AAATATGGACAGAAAGTTGTCAAAGGGAATCCTTATCCGAGGAGCTACTACAAGTGCACA 1322
Query 1471 ACACC-GGATTGCGGAGTAAGGAAACATGTAGAGAGAGCAGCAA-ATGACCCGAAAGCTG 1528
||||| |||| | || || ||||||||||||||||||||||||| | || || |||||||
Sbjct 1323 ACACCAGGAT-GTGGTGTGAGGAAACATGTAGAGAGAGCAGCAACA-GATCCAAAAGCTG 1380
Query 1529 TCGTAACAACATATGAAGGGAAACATAACCACGACGTTCCAGCTGGTAGAACCA-GCAGC 1587
| ||||||||||||||||| ||||||||||| ||| |||| |||| || || || |||||
Sbjct 1381 TAGTAACAACATATGAAGGAAAACATAACCATGACCTTCCCGCTGCTA-AATCAAGCAGC 1439
Query 1588 CAT 1590
|||
Sbjct 1440 CAT 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94527626235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5