BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484243
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03350.1 | Symbols: | Protein of unknown function, DUF538 |... 1053 0.0
> AT2G03350.1 | Symbols: | Protein of unknown function, DUF538
| chr2:1019579-1021186 REVERSE LENGTH=809
Length=809
Score = 1053 bits (570), Expect = 0.0
Identities = 736/811 (91%), Gaps = 31/811 (4%)
Strand=Plus/Plus
Query 1 AGAAAGAAGAATTGTGAGTCGCCGCAGCTATCACTCTGTTCTGTCACTTTGTC-TTTACT 59
|||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 1 AGAAAGAAAAATTGAGAGTCGCCACAGCTATCACTCTGCTCTGTCACTTTGTCTTTTACT 60
Query 60 C------TC----TC----agag-aatcgccagagagagagcgagaggaa-ggagaatgg 103
| || | |||| || | |||||||||||||| |||| ||| |||||
Sbjct 61 CAGAGAATCAGAGACAGAGAGAGAAAGAGAGAGAGAGAGAGCGAGGGGAAGGGA-AATGG 119
Query 104 agaaGGCATTAACGAAAGTGACGAGCTTTAAAGTGGGAAGTTCATGGATCTCAAAGAAAG 163
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 AGAAGGCATTAACGAAAGTGACGAGCTTTAAAGTGGGAAGTTCATGGATCTCTAAGAAAG 179
Query 164 CTAAAGAAGAGTTCTCCAACATCACCAATGACCTCACTACTTTCTCCAGTACTGTTGAAG 223
||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 180 CTAAAGAAGAGCTCTCAAACATCACCAATGACCTCACTACATTCTCCAGTACGGTTGAAG 239
Query 224 AGAAAGCAAAATGGGTTTTCAACAAGCTTAAAGGAAAACCACTCAAAAGCTTACCAGATC 283
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 240 AGAAAGCAAAATGGATTTTCAACAAGCTTAAAGGAAAACCACTGAAAAGCTTACCAGACC 299
Query 284 TCCTCAAAGAATACAACTTACCACCAGGACTCTTCCCACAAAACATAATCTGCTACGAGT 343
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 TCCTCAAAGAATACAACTTACCACCAGGACTCTTCCCACAAAACATAATCTGCTACGAAT 359
Query 344 TTGACGAGACAAAGAACAAACTCACTGTCTTCTTTTCTTCACCGTGCGAAGTCACATTCA 403
| || ||||| ||||| |||||||| |||||||| |||||||| || |||||||||||||
Sbjct 360 TCGATGAGACGAAGAATAAACTCACCGTCTTCTTCTCTTCACCATGTGAAGTCACATTCA 419
Query 404 AAGACGGATCAGCAATAAGATACGCGACGCGTGTGAAAGGGATTTTGCTTAGAGGGAAAC 463
|||| |||||||| |||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 420 AAGATGGATCAGCGATAAGATATGCAACGCGTGTGAAAGGGATTTTGCTTAGAGGGAAGC 479
Query 464 TTATGGGTGTGGAAGGAATGAAGACAAAAGTCTTGGTTTGGGTTAAAGTCACAACAATTT 523
| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 480 TGATGGGTGTGGAAGGAATGAAGACAAAAGTGTTGGTGTGGGTTAAAGTCACAACAATCT 539
Query 524 CAGTCGAGAGCTCGAAGTCTGACAAGCTCTGGTTCACTGCTGGTGTCAAGAAATCTCGAT 583
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAGTCGAGAGCTCCAAGTCTGACAAGCTCTGGTTCACTGCTGGTGTCAAGAAATCTCGAT 599
Query 584 CTAAGGACGTTTATGACACACCTCATGATGCTATCAAAGTCGTTGGAGAGTTCTAAGGAt 643
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 CTAAGGATGTTTATGACACACCTCATGATGCTATCAAAGTCATTGGAGAGTTCTAAGGAT 659
Query 644 tttttttCTTTCAGAAATGGTTATTATCATATTTGATTCATGAATTTATTTGGGTATTTG 703
|||||| | || | ||||||||||||||||||||||||||||||||||||| |
Sbjct 660 TTTTTT-CA--CA-AT-TGGTTATTATCATATTTGATTCATGAATTTATTTGGG-----G 709
Query 704 GGGTTATTTGCATTTTGGGAAGAGGTATATTTAAAGGGAATGTGTTTATATAACTCTCAT 763
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 710 ---TTATTTGCATTTTGGGAAGAGGTATACTTAAAGGAAATGTGTTTATATAACTCTCAT 766
Query 764 TTTCCTCCTATATATGCAAGAAATCACAAAT 794
||||||||| |||||||||||||||||||||
Sbjct 767 TTTCCTCCTTTATATGCAAGAAATCACAAAT 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38630059043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5