BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484253
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03460.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1083 0.0
AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superf... 147 2e-34
> AT2G03460.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:1043621-1044992 REVERSE LENGTH=1280
Length=1280
Score = 1083 bits (586), Expect = 0.0
Identities = 785/880 (89%), Gaps = 18/880 (2%)
Strand=Plus/Plus
Query 1 ACGAACACTAGCTGGTTCACCCTCTGTCGGAAACCTGATCAAACCCTAACCAATGGCACC 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 ACGAACACTACCTGGTTCACCCTCTGTCGGAAACCTGATCAAACCCTAACCAATGGCACC 406
Query 61 A-CTAAGAAGTCAAGTGGGATCCTGCTACCTAGAGTCTTCCTCAAGCGTCTCGGTTCTGG 119
| | ||||||||||| ||||||| ||||||||||||| || ||||||||||| |||| |
Sbjct 407 ATC-AAGAAGTCAAGCGGGATCCAGCTACCTAGAGTCCTCTTCAAGCGTCTCCATTCTTG 465
Query 120 ATTGTCGGTCTCACACGTGGCGCGAGGCTCCAAGCTTGCGGGAGGGGCTATGTTCGGTTT 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 466 ATTGTCGGTCTCACACGTGGCGCGAGGCTCCAAGCTTGCGTGAGGGGCTATGTTCTGTTT 525
Query 180 CTGCTAGTGTCATTGATCGAAAGATATACGTAGCAGGACGTTCCATAGATGGTGATAAT- 238
|| |||||||| |||||||||||||||||||||||||| ||| | | ||||||||| |
Sbjct 526 CTTCTAGTGTCCTTGATCGAAAGATATACGTAGCAGGAAGTTGCTTGGATGGTGATTCTT 585
Query 239 A-AC-TCGAAGAATTCGGTCGAGGTGTTCGACACTGAAACCCAAATTTGGGATCCGGAGG 296
| || | ||||||||| |||||||||| ||||||||||| ||| |||||||||| ||
Sbjct 586 ACACCTATAAGAATTCGTTCGAGGTGTTTGACACTGAAACACAATTTTGGGATCCTGATA 645
Query 297 CCATTACTTGCAGCGAGACACAAGGCGATTTTTACGAATGCAAAACCACATGTATTGACA 356
|||||||||||||| |||| ||||||||||||||| |||| |||| |||| ||||||
Sbjct 646 CCATTACTTGCAGCAAGACGGAAGGCGATTTTTACGGATGCGGAACCGCATGCATTGACG 705
Query 357 GAAAGTTTCATGTGGTGACTCTCGGTCAAAAA-GAG-G-CGGTTGTTTACAATTCCAAGA 413
|| |||| ||||||||| || | ||||||||| ||| | |||||| |||||||||||||
Sbjct 706 GAGAGTTCCATGTGGTGCCTGTAGGTCAAAAAAGAGAGGCGGTTGCTTACAATTCCAAGG 765
Query 414 AAGGTAGATGGGACAGGGTTAGACGAA-AAATAGATCAGTATAAGTTTTCAGCTTATTGC 472
||||||||||||||| |||| | | || |||| ||||| |||||||||||||||| ||||
Sbjct 766 AAGGTAGATGGGACATGGTTGGCC-AACAAATGGATCATTATAAGTTTTCAGCTTCTTGC 824
Query 473 GAGATAGAGAATGTTTTGTACTCTGGTACTCATGGAGTGTTCAGATGGTATGACACTAAG 532
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 825 GAGATACAGAATGTTTTGTACTCTTGTACTCATGGAGTGTTCAGATGGTATGACACTAAC 884
Query 533 GCAA-GTAGGTGGAGAGATTTGAAAGGTTTGGCAGGACTACCTGA-GTTCGGTTCTGGTG 590
|||| | | ||||||||||||||| ||||||| |||||||||| | ||||||||||||||
Sbjct 885 GCAATG-ATGTGGAGAGATTTGAAGGGTTTGGTAGGACTACCT-ATGTTCGGTTCTGGTG 942
Query 591 CGAATATTAAATTGGCTGGTTATGGTGGAAAGAT-AGCGGTTTTGTGGGAGGAGGATTTG 649
| ||| |||| ||||||| |||||| ||||| || | ||||||||||||||||||| |||
Sbjct 943 CCAATGTTAAGTTGGCTGATTATGGAGGAAA-ATTAACGGTTTTGTGGGAGGAGGAGTTG 1001
Query 650 CCTTCTTGTGGACCTGATAGCGGCTATAAGAAGATGATCCGGTGTGCAGAGATAGCTCTT 709
|||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 1002 CCTTCTCGTGGACCTGATAGCGGCTATAAGAAGATGATTCGGTGTGCAGAGATTGCGCTT 1061
Query 710 GAAAGGCGCAAATGTCATGAAATTTGGGGGATTATTGAGTGGTTTGGTGATGTGCTTACC 769
|||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1062 GAAAGGCGCAAAAGTTGTGAAATTTGGGGGATTGTTGAGTGGTTTGGTGATGTGCTTACC 1121
Query 770 GTCCCTGTAGGATATGTTGTTTTGGAGAAGGTTCTTGCTGTTACTCTTTGATGAGCCTTG 829
| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1122 GAACCTGTAGGATATGTTGTTTTGGAGAAGGTTCTTGATGTTACTCTTTGATGAAACTTG 1181
Query 830 AATGTGTTTTCTTTTGGAATGCTTATGT-T-CTTTTGGTG 867
|||||||||||||||||||| ||| ||| | |||||||||
Sbjct 1182 AATGTGTTTTCTTTTGGAATACTTGTGTGTTCTTTTGGTG 1221
> AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:15477324-15479040 FORWARD LENGTH=1074
Length=1074
Score = 147 bits (79), Expect = 2e-34
Identities = 314/421 (75%), Gaps = 41/421 (10%)
Strand=Plus/Plus
Query 96 CTTCCTCAAGCGTCTCGGTTCTGGATTGTCGGTCTCACACGTGGCGCGAGGCTCCAAGCT 155
||| ||| || |||||| || | ||||| |||||||||||||||||||||||||||||||
Sbjct 422 CTTACTCTAGTGTCTCGATTTTTGATTGCCGGTCTCACACGTGGCGCGAGGCTCCAAGCT 481
Query 156 TGCGGGAGGGGCTATGTTCG--GTTTCTGCTAGTGTCATTGATCG-AAAGATATACGTAG 212
||| | || |||| ||| | ||||||||| | ||| |||| || ||||||||| ||||
Sbjct 482 TGCCAGTGGAGCTA-GTT-GAAGTTTCTGCTGGCGTCCTTGA-CGGAAAGATATATGTAG 538
Query 213 CAGGACGTTCCATAGATGGTGATAAT---AACTCGAAGAATTCGGTCGAGGTGTTCGACA 269
| ||| ||| || |||||| ||| | |||| |||||| | |||||||||||||||
Sbjct 539 CCGGAAGTTGCAAAGATGGAGATTCTCTTAACTTGAAGAACACTTTCGAGGTGTTCGACA 598
Query 270 CTGAAACCCAAATTTGGGATCCGG-AGGCC-ATTACTTGCAGCGAGACACAAGGCGATTT 327
| |||| ||| ||||||||| | | || || ||| || ||| ||| || | | |
Sbjct 599 CAAAAACACAAGTTTGGGATCATGTA--CCTATCCCTTACAACGAAACAAAACACAACAT 656
Query 328 TTACGAATGCAAAACCACATGTATTGACAGAAA-GTT-TCATGT-GGTGACTCTCGGTCA 384
|||| | ||||| | |||||||||| |||| || | |||| || | || | |
Sbjct 657 TTAC---TCCAAAAGCTTATGTATTGAC-GAAAAGTGGT-ATGTAGGGG-CTAA-G---A 706
Query 385 AAAAGAGGCGGTTGT-TTACAATTCCAAGAAAGGTAGATGGGACAGGGTTAGA--C-GAA 440
|||| | |||| | ||||||| |||||||||||| ||||||| ||| || | ||
Sbjct 707 GAAAG-GT-GGTT-TCTTACAATCCCAAGAAAGGTATATGGGACCTTGTT-GAATCAGAG 762
Query 441 AAATAGATCAGT-ATAAGTTTTCA---GCTTATTGCGAGATAGAGAATGTTTTGTACTCT 496
| | | | ||| |||||| |||| | |||||| ||||||||||| ||||||||||||
Sbjct 763 ATGT-G-T-AGTTATAAGTCTTCATATGATTATTGTGAGATAGAGAACGTTTTGTACTCT 819
Query 497 G 497
|
Sbjct 820 G 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5