BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484254
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03470.1 | Symbols: | ELM2 domain-containing protein | chr2... 2087 0.0
> AT2G03470.1 | Symbols: | ELM2 domain-containing protein | chr2:1045456-1047684
REVERSE LENGTH=1707
Length=1707
Score = 2087 bits (1130), Expect = 0.0
Identities = 1559/1754 (89%), Gaps = 77/1754 (4%)
Strand=Plus/Plus
Query 1 CACGAACCCGTAACCCTAGCCGCCTTGGAAATTTCCCaaaaaaaaTTTTC-AACAAATTT 59
|||||||||||||||||||||||||| ||| ||||||| ||||| |||||| ||
Sbjct 1 CACGAACCCGTAACCCTAGCCGCCTTCAAAAATTCCCAATTTGTTTTTTCAAACAAACTT 60
Query 60 TCTCAGATCCTCTTCTTCTCAGAGATCAATCTTCAAATCAATTGTAATATTAAAATAAAT 119
|||||||||||||||||| || |||||||||||||||||||||| | |||||||||||
Sbjct 61 GCTCAGATCCTCTTCTTCTTAGGGATCAATCTTCAAATCAATTGT--TGTTAAAATAAAT 118
Query 120 GGGATTAAAGCGACCTTATGATGCTGAAGAGATGCAAGAGTGCAATGCTAAGCATGCAAG 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 119 GGGATTAAAGCGACCTTATGATGCTGAAGAGATGCAAAAGTGCAATGCTAAGCATGCAAG 178
Query 180 ACAGCTTAGTTATAACAACCATAACCAATTTGACGAAGCTATTCCATATCATCATGTTTC 239
|||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 179 ACAGCTTAGTTACAAAAACCATAACCAATTTGACGAAGCTATTCCATATCATCATGCTTC 238
Query 240 TATGGACAAGAAGACAAGTGTTTTAGTGGAGGATTTGAGTGGTCTCTGTGAG-ATACCTA 298
|||||| |||||||||| ||||||||| |||||| ||| ||||||||||||| || ||||
Sbjct 239 TATGGAGAAGAAGACAAATGTTTTAGTAGAGGATCTGATTGGTCTCTGTGAGAAT-CCTA 297
Query 299 CGTGGACTAATGATGCAAATCATGTTGACAAGGGTTTTGAAACGTGGATCTCAACAACTG 358
|||||||||||||||||||||| |||||||||||||||| || | |||| | |
Sbjct 298 CGTGGACTAATGATGCAAATCACGTTGACAAGGGTTTTG-AA-----A---CAAC--C-G 345
Query 359 ATTTGTGTCAGGAAGATTCTCAGTCTGGAGGGACGACTCAGGCAGATCTTTCTCATCAAT 418
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 346 GTTTGTGTCAGGAAGATTCTCAGTCTGGAGTGACGACTCAGTCAGATCTTTCTCATCAAT 405
Query 419 CTTCTGGTTCAGATTTCACCTGGAGACCACTTTCTCCAGTGGAAGATGTTTATTCTTGTC 478
||||||||||||||||||||| | || | |||||||||||||||||| |||||
Sbjct 406 CTTCTGGTTCAGATTTCACCT-G-GA--A-----GCCAGTGGAAGATGTTTATACTTGTT 456
Query 479 TGATGAATCAACCTCCTAGGAAACAAGTTCTTGTTGGGTCTAATCACCAGGCGGATATTC 538
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 457 TGATGAATCAACCTCCTAGGAAACAAGTTCTTGTTGGGTCTAATCATCAAGCGGATATTC 516
Query 539 CTGAGTTTGTCAAGGAAGAGGTTCTTG----G-C----G---G---T------GACTTAG 577
| |||||||||||||||||| |||||| | | | | | |||||||
Sbjct 517 CCGAGTTTGTCAAGGAAGAGATTCTTGATCAGTCAGAGGCTCGAACTAAGGAGGACTTAG 576
Query 578 AAGGGAAGCTGATGGGAAAGTGCATAATACCAATGTCTAACTCGGACCTTTGTGGAACCG 637
|||||||||||||| ||||||| | |||||||||||| |||| ||||||||||||||||
Sbjct 577 AAGGGAAGCTGATGAGAAAGTGTGTGATACCAATGTCTGACTCTGACCTTTGTGGAACCG 636
Query 638 GTCAAGGAAGAAAGGAATGTCTTTGCCCGGATAAAGGCTCCATTAGATGCGTGCGGCGAC 697
||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 637 GTCAAGGAAGAAAGGAATGTCTTTGCCTAGATAAAGGCTCTATTAGATGTGTGCGGCGAC 696
Query 698 ATATCATGGAAGCCAGAGAGAGCCTGATTGAAAATATTGGATATGAAAGGTTTATGGAGC 757
||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 697 ATATCATTGAAGCCAGAGAGAGTTTGGTTGAAACTATTGGATATGAAAGGTTTATGGAGC 756
Query 758 TAGGGTTCTGTGAGATGGGGGAGGAAGTTGCAAGCGTATGGACCGAGGACGAAGAAGATC 817
||||||| ||||||||||||||||||||||| || ||||||| ||||| ||||||||||
Sbjct 757 TAGGGTTATGTGAGATGGGGGAGGAAGTTGCGAGTTTATGGACAGAGGAAGAAGAAGATC 816
Query 818 TCTTTCACAAGGTTGTATACTCCAATCCTTTTTCAGTGGGTCGCGACTTCTGGAAGCAAT 877
||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 817 TCTTTCACAAGGTTGTATACTCCAATCCTTTCTCAGCGGGTCGTGACTTCTGGAAGCAAT 876
Query 878 TAAAGGCAGTGTTTCCTTCAAGAACCATGAAGGAATTTGTTAGCTACTACTTCAATGTCT 937
|||||| | |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 877 TAAAGGGAACGTTTCCTTCAAGAACCATGAAGGAGTTGGTTAGCTACTACTTCAATGTCT 936
Query 938 TCATCTTGCGGAGACGGGGTACTCAGAATCGGTTCAAAGACCTAGACGTCGATAGTGATG 997
||||||||||||||||||||| ||||||||||||||||| |||||| || || |||||||
Sbjct 937 TCATCTTGCGGAGACGGGGTATTCAGAATCGGTTCAAAGCCCTAGATGTTGACAGTGATG 996
Query 998 ATGACGAGTGGCAAGTAGAGTACAACATCTTCT-ACAGCACCAAATCTTTAGATGAGGAA 1056
|||||||||||||||| || |||||||| || | ||||||||||||||||||||||||||
Sbjct 997 ATGACGAGTGGCAAGTTGAATACAACAT-TTTTAACAGCACCAAATCTTTAGATGAGGAA 1055
Query 1057 GACAACAATGGAAATCGCTCCTCACATGAAGATAACGAGgaagaagaagaagaagaagaa 1116
|||||||||||||||||||||||| ||||||||||| | || |||||||||
Sbjct 1056 GACAACAATGGAAATCGCTCCTCATATGAAGATAAC---------G-AG--GAAGAAGAA 1103
Query 1117 gaaACCAGCAGCAGtgatgatgatgatgatgatgaAGGAGAAGAAAAAGACGACTCACCA 1176
||||||||||||| ||||||||||||| | |||| |||||| ||||||||||| ||
Sbjct 1104 GAAACCAGCAGCA---ATGATGATGATGA--A-GAAGAAGAAGAGGAAGACGACTCATCA 1157
Query 1177 AGTAATGATGCTCATTGTGTATATATGGATAAGGTTTCAAGAGACAGTGTTGGTGAGGAG 1236
||||| ||||||||||||||| ||| |||||||| |||||||||| || ||||||| ||
Sbjct 1158 AGTAACGATGCTCATTGTGTAGATACGGATAAGGCTTCAAGAGACGGTTTTGGTGAAGAA 1217
Query 1237 GTAAATGTGGAAGACGACTCATGTATGTCCTTCGAGTTACAAGACTCCAACTTGATCTTC 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GTAAATGTGGAAGACGACTCATGTATGTCCTTCGAGTTACAAGACTCCAACTTGATCTTC 1277
Query 1297 ACTCACAGCCCAATTCAAAA-CAGAGAGTGCCACAGATCTGGTGATGACTCGTATTCATT 1355
| ||||| |||||| ||||| |||||||||||||||||||||||| || || ||||||||
Sbjct 1278 AGTCACAACCCAAT-CAAAAACAGAGAGTGCCACAGATCTGGTGAAGATTCATATTCATT 1336
Query 1356 TGATGATCAGAGATTCACATCAGATTGTTGGAACAAGAACAACGATCTTCTACCAACTTC 1415
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1337 TGATGATCAGAGATTCACATCAGATTGTTGGAACAAGAACAACGATCTACTACCAACTTC 1396
Query 1416 AAACATTATTGAGGAGATATTTGGTCAAGATGATTGGG-ACGATAATGATGATGATAACT 1474
|||||||||||||||||||||||||||||| ||||||| | ||||| |||||| ||||||
Sbjct 1397 AAACATTATTGAGGAGATATTTGGTCAAGACGATTGGGGA-GATAAAGATGATAATAACT 1455
Query 1475 TGAAGGGGAAGTAACTGAAAAGCTTTCTTCTCTTCTTCCATAGATTTCTGCAGAtttttt 1534
|||||| ||||||| | ||||| ||||||||| |||| ||| |||| |||||||||||||
Sbjct 1456 TGAAGGAGAAGTAAATAAAAAGTTTTCTTCTCCTCTTTCATGGATT-CTGCAGATTTTTT 1514
Query 1535 ttttCTTAAGTGAATTATTTAAAGAAGCAGAAGTTTGAAAGTTTCCTCTTTGGGAGtttt 1594
||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1515 TTTTCTTAAGTGAATTAGATAAAGATGCAGAAGTTTGAAAGTTTCATCTTTAGGAGTTTT 1574
Query 1595 tttGTTGGTTTAGGTTGAAGAAGAAGGGACTTCTTGATTGATTTGACTATGTAAAAAA-G 1653
| ||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||| |
Sbjct 1575 GT-GTTGGTTAAGGTTGAAGAAGAAAGGACTTCCTGATTGATTTGACTCTGTAAAAAATG 1633
Query 1654 CTATTAAAATCCAGGAACCtttttt-ctagttttttttttGAGTCTTCAAGATCTCAATG 1712
||||| ||||||| ||||||||||| || | || |||| |||| ||||||||||||||
Sbjct 1634 CTATTCAAATCCATGAACCTTTTTTTCTC-TAGTTGTTTT-AGTCCTCAAGATCTCAATG 1691
Query 1713 TACATTATTTTGGT 1726
||||||||| ||||
Sbjct 1692 TACATTATTATGGT 1705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85340926500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5