BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484260
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03510.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 2019 0.0
> AT2G03510.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr2:1066606-1069149 FORWARD
LENGTH=1397
Length=1397
Score = 2019 bits (1093), Expect = 0.0
Identities = 1245/1315 (95%), Gaps = 23/1315 (2%)
Strand=Plus/Plus
Query 1 AAAAACCCCTTTCCAAGTTTTCCAATTTTTCCACTGAACACAAAACTTTTCCGGTGAAGC 60
||||||||||||||||||||| ||| ||||||||||||| |||||||| ||||| ||||
Sbjct 44 AAAAACCCCTTTCCAAGTTTTGCAA--TTTCCACTGAACAGAAAACTTTCCCGGTTAAGC 101
Query 61 AAAATTCGCCATGGATGCTCAACAACGGAGACCTGAAATCCCTCGCGCACCACCGGTCGG 120
||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||
Sbjct 102 AAAATTCGCCATGGATGCTCAACAACGGAGAACTGATATTCCTCGAGCACCACCGGTCGG 161
Query 121 AGAACCCGGTGGCGATGTATCTTCGATTTTCATTGCTTTCGGTGTTTTCGCTGCAATCGC 180
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 162 AGAACCCGGTGGCGATATATCTTCGATTCTCATTGCTTTCGGTGTTTTCGCTGCAATCGC 221
Query 181 CGCCTTGGTTATGTTTCCCTCATCGTTAGTGCATCAAGTTCCTGAAGGTCACGTTGGAGC 240
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 222 CGCCTTGGTTATGTTTCCCTCATCGTTGGTGCACCAAGTTCCTGAAGGTCACGTTGGAGC 281
Query 241 GTATTGGAGAGGTGGTGCTCTTCTAAACATAATCACAGAGCCAGGTTTTCATCTGAAGCT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 282 GTATTGGAGAGGTGGTGCTCTTCTAAATATAATCACAGAGCCAGGTTTTCATCTGAAGCT 341
Query 301 GCCTTTCATAACCAACTATGAGCCTGTTCAAGTTACTCTACAAACAGATCAAGTGAGTCT 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 342 GCCTTTCATAACCAACTATGAGCCTGTTCAAGTTACTCTACAGACAGATCAAGTGAGGGA 401
Query 361 TATACCATGTGGTACCAAAGGAGGTGTCATGATTACCTTTGAGAAGATCGAAGTTGTTAA 420
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 402 TATACCATGTGGTACCAAAGGAGGTGTCTTGATTACCTTTGAGAAGATAGAAGTTGTTAA 461
Query 421 TCGACTGCGTAAGGATTATGTTTATGATACTTTGCTCAACTATGGAGTGAACTATGATAA 480
|||||| |||||||||| ||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 462 TCGACTACGTAAGGATTTTGTTTATGACACTTTGCTTAACTATGGTGTGAACTATGATAA 521
Query 481 CACATGGATTTATGACAAGATTCATCATGAGATCAACCAGTTCTGCAGCTCTCATTCACT 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 522 CACATGGATTTATGACAAGATTCATCATGAGATCAACCAGTTCTGTAGCTCTCATTCACT 581
Query 541 TCAGCAAGTCTACATTGACATCTTTGACCAGATTGATGAACGAATGAAAGATGCTCTTCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TCAGCAAGTCTACATTGACATCTTTGACCAGATTGATGAACGAATGAAAGATGCTCTTCA 641
Query 601 AGCTGATTGTACACGTTATGCTCCAGGAATTGAGATTCTTAGTGTGCGTGTCACAAAGCC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 642 AGCTGATTGTACACGTTATGCTCCAGGAATTGAGATTCTTAGTGTGCGTGTCACCAAGCC 701
Query 661 GAAAATTCCAGAGAGTGTTAGGCGTAACTTTGAGCAAATGGAAGAGGAACGCACTAAGGT 720
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 702 GAAAATTCCAGAGAGTGTAAGGCGTAACTTTGAGCAAATGGAAGAGGAACGTACCAAGGT 761
Query 721 CTTGATTGCTATTGAGAAACAAAGAGTTGCTGAGAAAGAGGCAGAGACAAAGAAAATAAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CTTGATTGCTATTGAGAAACAAAGAGTTGCTGAGAAAGAGGCAGAGACAAAGAAAATAAT 821
Query 781 GGCCATTAGTGAAGCTGAGAAGAACGCCAATGTAAGCAAGATTCTGATGCAACAGAAGTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GGCCATTAGTGAAGCTGAGAAGAACGCCAATGTAAGCAAGATTCTGATGCAACAGAAGTT 881
Query 841 GACTGAGAAAGACAGTTCACGGAGAGAAGCTGATATCGAGAATCAGATGTACCTTGACCG 900
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GACTGAGAAAGACAGTTCAAGGAGAGAAGCTGATATCGAGAATCAGATGTACCTTGACCG 941
Query 901 TCAAAAGAGTCTCGCGGATGCAGATTATTACCGTGTACTGAAAGAAGCTGAAGCAAACAA 960
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 942 TCAAAAGAGTCTCGCGGATGCAGATTACTACCGTGTACTGAGAGAAGCTGAAGCAAATAA 1001
Query 961 GTTGAAGCTCACCCCTGAATTTCTCGAACTCAAATTCATCGATGCCATTGCTCGTAACAC 1020
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1002 GTTGAAGCTCACCCCTGAATTTCTTGAACTCAAATTCATCGATGCCATTGCTCGTAACAC 1061
Query 1021 CAAAATATTCTTCGGGGACAAGGTACCTAACATGGTGTTGGATCAAAGGCTGCTTGGGAA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CAAAATATTCTTCGGGGACAAGGTACCTAACATGGTGTTGGATCAAAGGCTGCTTGGGAA 1121
Query 1081 CTTCCTCAATCATTCGACAAAAGACAAAGATGGAAGCTTGGAAATGGCCACTGATAC--- 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 TTTCCTCAATCATTCGACAAAAGACAAAGATGGAAGCTTGGAAATGGCCACTGATACATA 1181
Query 1138 --CTAGATGTTTCAGTCGCC-CAAAAATCAAACTTA-TTAT-TTTT-ATTGCATAACCTA 1191
||||||||||||||| || |||||| |||| || || | |||| |||||||||| ||
Sbjct 1182 GACTAGATGTTTCAGTC-CCACAAAAA-CAAATTTTCTTTTGTTTTTATTGCATAACATA 1239
Query 1192 ACAACACTTGA-CAGTGAAATTTGGAAGCTTCTCTTGTGGCTTTTATTTGGTTGCAAGTT 1250
| ||||||| | |||||||||||||||||||||| || ||||| |||| |||||||
Sbjct 1240 A-AACACTT-ATCAGTGAAATTTGGAAGCTTCTCCCGTAGCTTTCATTTAGTTGCAA--- 1294
Query 1251 GAAACCCAATCTCCTAGTAACCATGTTTTTGTCTAAAAAGGAATCTCATCAAGAC 1305
|||| ||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1295 ----CCCAGTCTCCTAGTAACCATGTTTTTGTCTAAAAAGAAATCTCATTAAGAC 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65511711225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5