BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484261
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03520.1 | Symbols: ATUPS4, UPS4 | ureide permease 4 | chr2:... 1869 0.0
> AT2G03520.1 | Symbols: ATUPS4, UPS4 | ureide permease 4 | chr2:1069491-1071382
FORWARD LENGTH=1322
Length=1322
Score = 1869 bits (1012), Expect = 0.0
Identities = 1241/1347 (92%), Gaps = 33/1347 (2%)
Strand=Plus/Plus
Query 1 ATGTATGTGGTTGAGAGCAAAGCAGGAGCTATAGGATGTATGATACTTTCATTGTGTTGT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4 ATGTATGTGGTTGAGAGCAAAGCAGGAGCTATAGGATGTATGATACTCTCATTGTGTTGT 63
Query 61 TTGGGAAGTTGGCCAGCGATTCTGACTCTATTGGAGAGAAGAGGTCGTCTTCCTCAACAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TTGGGAAGTTGGCCAGCGATTCTGACTCTATTGGAGAGAAGAGGTCGTCTTCCTCAACAC 123
Query 121 AC-TCTTCTTGATTTCGCAACCGCGAATCTCTTGGCTGCAATCGTGATCGCGTTTTCACT 179
|| | ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 124 ACGT-TTCTTGATTTCGCAACCGCGAATCTCTTGGCTGCAATCGTGATAGCATTTTCGCT 182
Query 180 CGGTGAGATTGGAAAAAGCACGTTTGGAAAACCTGACTTTACCACTCAGCCCCCTCAGGA 239
|||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 183 CGGTGAGATTGGGAAAAGCACGTTTCTAAAACCTGACTTTACCACTCAGCTACCTCAGGA 242
Query 240 TAATTGGCCGTCGGTATTGCTTGCAGTCGCAGGCGGTGTGCTTCTTAGCATAGGGAATTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 243 TAATTGGCCGTCGGTATTGCTTGCAGTCGCAGGCGGTGTGCTTCTTAGCATCGGGAATTT 302
Query 300 AGCGACTCAATACGCTTTTGCGTTTGTCGGTTTATCGGTTACTGAAGTTATAACCGCAAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AGCGACTCAATACGCTTTTGCGTTTGTCGGTTTATCGGTTACTGAAGTTATAACCGCAAG 362
Query 360 CATTACCGTCGTCATTGGTACGACGTTGAATTATTTCTTGGACGACAAGATAAACAAAGC 419
||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 363 CATTACCGTCGTCATTGGTACAACATTGAATTATTTCTTGGACAACAAGATAAACAAAGC 422
Query 420 TGAGATCCTCTTCCCCGGCGTAGGTTGCTTCTTGATCGCTGTTTTCCTCGGTGCTGCGGT 479
|||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 423 CGAGATCCTCTTCCCTGGCGTAGGTTGCTTCTTGATCGCTGTTTTCCTAGGCGCTGCGGT 482
Query 480 TCACGCTTCTAATGCAGCTGATGTCAAAGCGAAACTCAAGTCTTTACCTAGCGAGTATAA 539
||| ||||||||||||||||||||||||| |||||||||||||||| | | |
Sbjct 483 TCATGCTTCTAATGCAGCTGATGTCAAAGAGAAACTCAAGTCTTTA-C---C-----T-- 531
Query 540 AGCTGAGACAAAAGATTTCTATTCTTCCACTAAAAATGTTGAAGACAACCCTGAAAAAGA 599
||| | ||||||| |||||||| | | |||||| ||||||||| ||||||| |||
Sbjct 532 AGC---G----AAGATTTATATTCTTCTATTGAAAATGGTGAAGACAAGCCTGAAATAGA 584
Query 600 GAAAAATGATGTCGAATCTCAAGAGAAACAAGCGGGAAAGGCTAAAGCAGGGACAGCAGG 659
||||| ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||
Sbjct 585 GAAAACTGATGTCGAATCTCAAGAGAAACTCGCGGAAAAGGCGAAAGCAGGGACGGCAGG 644
Query 660 ATTCTTTGTAGAGCTAGAGAACAAAAGGGCAATCAAGGTCTTTGGAAAGAGCATAATGAT 719
||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 645 ATTCTATGTAGAGCTAGAGAACAAAAGAGCAATCAAGGTCTTTGGAAAAAGCATAATGAT 704
Query 720 CGGACTATTCATAACGCTCTTTGCGGGAACCTGCCTTTCTCTATTCTCTCCTGCATTCAA 779
|||||||||||||||||| || ||||||| | ||||||||||||||||||||||||||||
Sbjct 705 CGGACTATTCATAACGCTGTTCGCGGGAATCAGCCTTTCTCTATTCTCTCCTGCATTCAA 764
Query 780 CTTGGCAACAAATGATCAATGGAGTACATTGCCAAAAGGCGTACCTAAACTCGTTGTCTA 839
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 765 CTTGGCAACAAACGATCAATGGAGTACATTGCCAAAAGGCGTACCTAAGCTCGTTGTCTA 824
Query 840 TACCGCTTTTTTCTACTTCTCCATTGCGGGTTTTCTCATTGCTCTGATTCTAAACATCAT 899
|||||| |||||||||||||| || ||||||||||||||| || ||||||||||| ||||
Sbjct 825 TACCGCCTTTTTCTACTTCTCAATCGCGGGTTTTCTCATTTCTTTGATTCTAAACCTCAT 884
Query 900 CTTTCTTTACCGGCCAATGGTAGCCTTAGCGAGATCATCGCTTAAGAAGTATATATATGA 959
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 885 CTTTCTTTACCGGCCAATGGTAGGCTTAGCGAGATCATCGCTTAAGAAGTATATATATGA 944
Query 960 CTCTAAAGGTAGAGGTTGGGCGGTTTTCGCTGGATTCTTGTGTGGGTTTGGTAACGGTTT 1019
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 945 CTCCAAAGGTAGAGGTTGGGCGGTTTTCGCTGGATTCTTGTGCGGGTTTGGTAACGGTTT 1004
Query 1020 ACAGTTCATGGGAGGTCAAGCCGCTGGATACGCGGCTGCGGACTCTGTCCAGGCACTTCC 1079
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1005 GCAGTTCATGGGAGGTCAAGCCGCTGGATACGCGGCTGCAGACTCTGTCCAGGCACTTCC 1064
Query 1080 TCTTGTGAGCACATTTTGGGGCATAGTTTTGCTT-GGAGAGTATCGTAGATCGTCAAAGA 1138
|||||| |||||||||||||| ||||||||| || ||||||||||| | |||||| |||
Sbjct 1065 TCTTGTAAGCACATTTTGGGGTATAGTTTTG-TTCGGAGAGTATCGAAAATCGTCGAAGC 1123
Query 1139 GAACTTATGCACTTTTAGTTAGCATGTTGGCCATGTTTGTGGCGGCCGTGGCGATTCTTA 1198
|||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1124 GAACTTATGCCCTTTTAGTTAGCATGTTGGCCATGTTTGTGGCGGCCGTAGCTATTCTTA 1183
Query 1199 TGGCATCTTCCGGTCACCGGAAATGATGAGCTTTTCTTAGTTGTATTTCGCATGCATTAC 1258
|||| |||||||||||||||||||||||| ||| || |||||||||| || | |
Sbjct 1184 TGGCCTCTTCCGGTCACCGGAAATGATGATCTTATCATAGTTGTATT----AT--A---C 1234
Query 1259 ATGTGAGATTCTAAGTGAGTGAAGAAGATATGTTCTGTTTCAAAAGTATAAT-TTTTT-C 1316
|||| ||||| ||||||| ||||||| |||||||||||||||||| | | || ||||| |
Sbjct 1235 ATGTAAGATTATAAGTGAATGAAGAATATATGTTCTGTTTCAAAAATGTTATGTTTTTTC 1294
Query 1317 ATTCTAATTGGAGAAACATTATTTTTT 1343
||||||||||||||||||| |||||||
Sbjct 1295 ATTCTAATTGGAGAAACATAATTTTTT 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66114117765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5