BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484262
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03530.1 | Symbols: UPS2, ATUPS2 | ureide permease 2 | chr2:... 2041 0.0
AT2G03600.4 | Symbols: UPS3 | ureide permease 3 | chr2:1097042-... 163 4e-39
> AT2G03530.1 | Symbols: UPS2, ATUPS2 | ureide permease 2 | chr2:1071594-1073566
FORWARD LENGTH=1368
Length=1368
Score = 2041 bits (1105), Expect = 0.0
Identities = 1280/1362 (94%), Gaps = 21/1362 (2%)
Strand=Plus/Plus
Query 1 ACATTCTCTGGA-AGAAAGATCTAAAACACATGTGGTGGAAACTCTCTTGAAGTTATTTG 59
|||||||||||| | |||||||||||| | |||||||||||||||||||||| |||||||
Sbjct 1 ACATTCTCTGGACA-AAAGATCTAAAAGATATGTGGTGGAAACTCTCTTGAACTTATTTG 59
Query 60 CAGAAGTGATAATATCCTCTGTTCTTGCAGAACCTAGCAAAGGGCTGATCCATTTTGATC 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 60 CAGAAGTGATATTATCCTCTGTTCTTGCAGAACCTAGCAAAGGGCTGATCCATTTAGAGC 119
Query 120 CCGAAAATATGTATCTAGTCGAGAGCAAAGGAGGTGCCATAGCTTGTATGCTTTTAGCTT 179
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 120 CCGAGAATATGTATCTAGTGGAGAGCAAAGGAGGTGCCATAGCTTGTATGCTTTTAGCCT 179
Query 180 TACTATCTCTAGGGACTTGGCCAGCAATTCTAACACTTTTAGAGAGACGTGGACGTCTTC 239
|||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 180 TACTATCTCTAGGGACTTGGCCAGCAGTTTTAACACTTTTAGAGAGACGTGGCCGTCTTC 239
Query 240 CTCAACACACTTATCTTGATTACTCCATCACTAACTTGTTGGCTGCTATTATTATAGCTT 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTCAACACACCTATCTTGATTACTCCATCACTAACTTGTTGGCTGCTATTATTATAGCTT 299
Query 300 TCACTTTTGGTCAAATCGGGTCTACAAAACCCGATAGCCCGAACTTCATCACTCAGCTTG 359
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 300 TCACTTTTGGTCAAATTGGGTCTACAAAACCCGATAGCCCAAACTTCATCACTCAGCTTG 359
Query 360 CTCAAGATAATTGGCCATCTGTTATGTTTGCAATGGCGGGCGGGATCGTGCTTAGCCTCG 419
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 CTCAAGATAATTGGCCGTCTGTTATGTTTGCAATGGCGGGCGGTATCGTGCTTAGCCTCG 419
Query 420 GGAATCTAGCAACTCAATATGCTTGGGCTTTAGTAGGCCTATCAGTAACAGAAGTCGTTA 479
|||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||||| | |
Sbjct 420 GGAATCTATCAACTCAATATGCATGGGCTTTAGTAGGCTTATCAGTTACAGAAGTCATCA 479
Query 480 CATCAAGCATCACTGTAGTCATAGGCTCAACTTTGAACTATTTCTTGGATGATAAGATCA 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 CATCAAGCATCACTGTAGTCATAGGCTCAACCTTGAACTATTTCTTGGATGATAAGATCA 539
Query 540 ATAAAGCCGAGATCCTTTTCCCCGGTGTGGCCTGTTTCTTGATCGCAGTTTTTCTTGGTT 599
| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 540 ACAAAGCCGAGATCCTTTTCCCCGGTGTGGCCTGTTTCTTGATCGCGGTTTGTCTTGGTT 599
Query 600 CAGCAGTTCATAGATCCAATGCAGGCGATAACAAGGCCAAACTACGCGACTTTGAAATGG 659
|||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||| ||
Sbjct 600 CAGCAGTTCATAGATCCAATGCAGACGATAACAAGGCCAAGCTAAGAGACTTTGAAACGG 659
Query 660 CTAAGCAAGAACCTTCAGGTCCATCTACTGAAATAGGAACAAACTCATCAAAAGACCTGG 719
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 660 CTAAGCAAGAAGCTTCAGGTCCATCTACCGAAATAGGAACAAACTCATCAAAAGACCTGG 719
Query 720 AGACTAATGTTACTGATGAAACATCGACGAAACCCAAAGAAGGGACAGCAAGATTTCTTA 779
||||||||||||| || || | || || |||||||||||||||||||||||||
Sbjct 720 AGACTAATGTTAC-GA-----CA---A--AA-CCTAAAGAAGGGACAGCAAGATTTCTTA 767
Query 780 TTGAGCTTGAGAACAAAAGAGCCATAAAGGTGTTCGGGAAACGAAAGATAATCGGACTAG 839
| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 768 TAGAGCTTGAGAACACAAGAGCCATAAAGGTGTTCGGAAAACGAAAGATAATCGGACTAG 827
Query 840 CGATTACTTTCTTCGCAGGTCTTTGTTTCTCCCTATTCTCTCCAGCATTTAACTTAGCCA 899
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 828 CGATTACTTTCTTCGCAGGTCTTTGTTTCTCCCTCTTCTCTCCAGCATTTAACTTAGCCA 887
Query 900 CAAACGATCAGTGGCACAGATTGAAACAAGGAGTTCCAAAGCTAGTTC-TTTACACAGCA 958
| |||||||| ||| ||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 888 CTAACGATCAATGGAACAGATTGAAACAAGGAGTGCCAAAGCTAGT-CGTTTACACAGCA 946
Query 959 TTCTTCTACTTCTCTGTTTCTTGCTTTATCATTGCATTGATCCTCAACATTGGATTCCTC 1018
||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||
Sbjct 947 TTCTTCTACTTCTCTGTTTCTTGTTTTATCATTGCATTGATACTCAACGTTGTATTCCTC 1006
Query 1019 TACCACCCTGTTCTTGGTCTTCCAAAATCTTCTTTTAAAGCTTACTTAAATGACTGGAAT 1078
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TACTATCCTGTTCTTGGTCTTCCAAAATCTTCTTTTAAAGCTTACTTAAATGACTGGAAT 1066
Query 1079 GGTCGTTACTGGGCCTTTTTGGCGGGTTTTCTTTGCGGTTTTGGAAACGGTCTTCAGTTT 1138
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1067 GGTCGTTACTGGGCCTTTTTGGCGGGGTTTCTTTGCGGTTTTGGAAACGGTCTTCAGTTT 1126
Query 1139 ATGGGCGGTCAAGCCGCAGGATACGCGGCTGCTGATTCTGTTCAGGCGCTTCCTCTTGTG 1198
||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||
Sbjct 1127 ATGGGCGGTCAAGCCGCAGGATACGCGGCTGCTGACTCCGTTCAGGCTCTTCCACTTGTG 1186
Query 1199 AGTACATTTTGGGGAGTTGTTTTGTTTGGAGAATACAGAAGATCGTCGCGTAAAACTTAT 1258
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 1187 AGTACATTTTGGGGAGTGGTTTTGTTTGGAGAATACAGAAGATCGTCACGGAAAACTTAT 1246
Query 1259 CTACTTCTCTTCAGTATGTTGTTTATGTTTATTTCAGCTGTTGCAGTTCTCATGGCTTCT 1318
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1247 CTACTTCTCTTCTGTATGTTGTTTATGTTCATTTCAGCTGTTGCAGTTCTCATGGCTTCT 1306
Query 1319 TCGGGACATAGAAAGTAATTAAAAAACTCAATAGTTATAAAA 1360
|| ||||||||||||||| ||| |||||||| |||||||
Sbjct 1307 TCTGGACATAGAAAGTAA--AAA---CTCAATAGATATAAAA 1343
> AT2G03600.4 | Symbols: UPS3 | ureide permease 3 | chr2:1097042-1098826
FORWARD LENGTH=1269
Length=1269
Score = 163 bits (88), Expect = 4e-39
Identities = 217/279 (78%), Gaps = 10/279 (4%)
Strand=Plus/Plus
Query 911 TGGCACAGATTGAAACAAGGAGTTCCAAAGCT-AGTTCTTTACACAGCATTCTTCTACTT 969
||||||| |||||||| ||||||||||| || | | | |||||||| |||||||||||
Sbjct 798 TGGCACACTTTGAAACATGGAGTTCCAAAACTCA-ATGTGTACACAGCCTTCTTCTACTT 856
Query 970 CTCTGTTTCTTGC-TTTATCATTGCAT-TGATCCTCAACATTGGATTCCTCTACCACCCT 1027
||| | |||| | ||| ||| | |||| || ||||| ||| ||||| |||
Sbjct 857 CTCCATCTCTT-CATTTGGGGTTG-GTCTGATACTAAACATCATATTTCTCTATTGGCCT 914
Query 1028 GTTCTTGGTCTTCCAAAATCTTCTTTTAAAGCTTACTTAAATGACTGGAATGGTCGTTAC 1087
| |||||||| |||| ||| ||||| || |||||| ||||||||||||| ||||| |
Sbjct 915 ATACTTGGTCTCCCAAGATCATCTTTCAAGGCTTACCTAAATGACTGGAACGGTCGAGGC 974
Query 1088 TGGGCCTTT-TTGGCGGGTTTTCTTTGCGGTTTTGGAAACGGTCTTCAGTTTATGGGCGG 1146
| || |||| ||||| || ||||| || || ||||| || ||||||||||||||||||||
Sbjct 975 T-GGTCTTTCTTGGCTGGATTTCTCTGTGGATTTGGTAATGGTCTTCAGTTTATGGGCGG 1033
Query 1147 TCAAGCCGCAGGATACGCGGCTGCTG-ATTCTGTTCAGG 1184
||||||||| || || || ||||| | | |||||||||
Sbjct 1034 TCAAGCCGCTGGTTATGCTGCTGCAGGAG-CTGTTCAGG 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66967527030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5