BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484264
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03550.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1358 0.0
> AT2G03550.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:1077036-1078083 FORWARD LENGTH=1048
Length=1048
Score = 1358 bits (735), Expect = 0.0
Identities = 921/1005 (92%), Gaps = 35/1005 (3%)
Strand=Plus/Plus
Query 1 ATCTCTAGTCCAAGCAACAAAATGGATTCAG-AAGTCGCTTTCGATAGATCTCCGGCGTT 59
||||||| |||||||||||| |||||||| | || |||||||||| ||||||||| |||
Sbjct 24 ATCTCTAATCCAAGCAACAATATGGATTCCGTAA-TCGCTTTCGACAGATCTCCGATGTT 82
Query 60 TCGAGTCTACAAGAGTGGCCGCATTGAGCGTCTCTTAGGAGAAACAACCGTCCCACCATC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 TCGAGTCTACAAGAGTGGCCGCATTGAGCGTCTCTTAGGAGAAACAACCGTCCCACCATC 142
Query 120 TCTAACACCACAAAACGGCGTCGTCTCCAAAGATGTCATCTATTCACCGGATAAAAACCT 179
||| |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||||||
Sbjct 143 TCTTACACCACAAAACGGTGTCGTCTCCAAAGATATCATCCATTCACCGGAGAAAAACCT 202
Query 180 TTTCCTCCGCATCTACCTCCCGGAGAAAGTCTCGGACATCACCGACAAAAAGCTCCCAAT 239
| ||||||||||||||| |||||||||| || || | | ||||||||||||||
Sbjct 203 CTCCCTCCGCATCTACCTACCGGAGAAAG--TC--AC-T----GTTAAAAAGCTCCCAAT 253
Query 240 TCTCATCTACTTCCACGGTGGTGGTTTCATCATAGAAACAGCTTTTTCTCCAACTTACCA 299
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 254 CCTCATCTACTTCCACGGTGGTGGTTTCATCATAGAAACAGCTTTTTCTCCACCCTACCA 313
Query 300 CACTTTCCTCACATCTGCCGTCGCCGCCGCTAACTGCTTAGCGATCTCAGTAGATTATCT 359
||||||||||||||| |||||||| ||||||||||||||||| || |||||| | ||||
Sbjct 314 CACTTTCCTCACATCCGCCGTCGCGGCCGCTAACTGCTTAGCAATATCAGTAAACTATCG 373
Query 360 CCGTGCACCGGAGTTTCCGATTCCTATTCCATACGAAGATTCATGGGATTCTCTCAAATG 419
||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||
Sbjct 374 CCGTGCACCGGAGTTTCCGGTACCTATTCCGTACGAAGATTCATGGGATTCACTCAAATG 433
Query 420 GGTTTTAACTCATATCACCGGAACCGGACCGGAAACTTGGATAAACAAACACGGCGATTT 479
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GGTGTTAACTCATATCACAGGAACCGGACCGGAAACTTGGATAAACAAACACGGCGATTT 493
Query 480 CGGAAAAGTGTTTCTCGCCGGAGATAGCGCCGGTGGAAACATCGCACATCATCTTACGAT 539
|||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 494 CGGAAAAGTGTTTCTCGCCGGAGATAGCGCCGGTGGAAACATATCTCATCATCTAACGAT 553
Query 540 TCGAGCGAAAAGAGAGAA--------A--CTTT-----CAGGGATAATCTTGATTCATCC 584
|||||||||| |||||| | |||| ||||||||||||||||||||||
Sbjct 554 GCGAGCGAAAAAAGAGAAGCTTTGTGATTCTTTAATATCAGGGATAATCTTGATTCATCC 613
Query 585 ATATTTTTGGGGGAAGACTCCAATTGATGAATTTGAGGTTAGAGACGTGGGGAAGACGAA 644
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 614 ATATTTTTGGAGTAAGACTCCAATTGATGAGTTTGAGGTTAGAGACGTGGGGAAGACGAA 673
Query 645 AGGTGTTGAAGGAAGTTGGAGAGTCGCAAGTCCGAATAGTAAAGAAGGAGTTGATGATCC 704
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 674 AGGTGTTGAAGGAAGTTGGAGAGTCGCAAGTCCGAATAGTAAACAAGGAGTTGATGATCC 733
Query 705 ATGGCTCAACGTTGTTGGATCCGAATCATCGGATCTATCCGGATTAGGTTGCGGGCGGGT 764
||||||||||||||| ||||| || || | ||| | ||||||||||||||||||||
Sbjct 734 ATGGCTCAACGTTGTCGGATCGGA-TC--C--ATC---C-GGATTAGGTTGCGGGCGGGT 784
Query 765 TTTGGTAATGGTAGCTGGAGATGACCTGTTTGTGAGACAAGGTTGGTGTTACGCGGCGAA 824
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 785 TTTGGTAATGGTAGCTGGAGATGATCTGTTTGTGAGACAAGGTTGGTGTTACGCGGAGAA 844
Query 825 GCTGAAGAAGAGTGGATGGGAAGGTGAAGTTGAGGTAATGGAGACTAAAAATGAAGGTCA 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GCTGAAGAAGAGTGGATGGGAAGGTGAAGTTGAGGTAATGGAGACTAAAAATGAAGGTCA 904
Query 885 TGTTTTTCATTTGAAGAATCCTAATACTGATAATGCTCGTCAAGTCGTGAAGAAACTTGC 944
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 905 TGTTTTTCATTTGAAGAATCCTAATAGTGATAATGCTCGTCAAGTCGTGAAGAAACTTGA 964
Query 945 AGAGTTTATTAATAAGTAATATTCATGAGTACGTTTGTCGAAGGA 989
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 965 AGAGTTTATTAATAAGTAATATTAATGAGTACGTTTGTCGAAGGA 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5